mRNA_Ecto-sp13_S_contig14576.3510.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig14576.3510.1 vs. uniprot
Match: A0A6H5JFS7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFS7_9PHAE) HSP 1 Score: 558 bits (1437), Expect = 1.120e-182 Identity = 309/327 (94.50%), Postives = 310/327 (94.80%), Query Frame = 1
Query: 4 GSAGGALSSSGGLHAVGIDALPSSASLPPASSVQQTRPKSPRQLLQQQPSPHLLLQQPSQQQLREXXXXXXXXXXXXXXXXDQGNRGDQDAADXXDDDTFEADKEYRATKTWSVRELQLLWELKTNQPDLPPNRVAELMWKATGIRKTGDQCRTRWTKVDNPSITKGAWSQHEDELLYKAVNEMTKEDSPPPWVAISEACFKGKRTSKQCRARFMNHLDPGLRHFPWTFAENAALKKAANAYNGRQIKWASIVKDVPELVGRSPDAARNQHKMMGRPRAVFKSFTRAKQPTRVPIRPARQQPVAPVRIAPSVSAVGAMHPTAALSPQ 984
GSAG L SSGGLHAVGIDALPSSASLPPASSVQQTRPKSPRQLLQQQPSPHLLLQQPSQQQLREXXXXXXXXXXXXXXXX XXDDD FEADKEYRATKTWSVRELQLLWELKTNQPDLPPNRVAELMWKATGIRKTGDQCRTRWTKVDNPSITKGAWSQHEDELLYKAVNEMTKEDSPPPWVAISEACFKGKRTSKQCRARFMNHLDPGLRH PWTFAENAALKKAANAYNGRQIKWASIVKDVPEL+GRSPDAARNQHKMMGRPRAVFKSFTRAKQPTRVPIRPARQQPVAPVRIAPSVSAVGAMHPTAALSPQ
Sbjct: 14 GSAGETLFSSGGLHAVGIDALPSSASLPPASSVQQTRPKSPRQLLQQQPSPHLLLQQPSQQQLREXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDDDHFEADKEYRATKTWSVRELQLLWELKTNQPDLPPNRVAELMWKATGIRKTGDQCRTRWTKVDNPSITKGAWSQHEDELLYKAVNEMTKEDSPPPWVAISEACFKGKRTSKQCRARFMNHLDPGLRHLPWTFAENAALKKAANAYNGRQIKWASIVKDVPELIGRSPDAARNQHKMMGRPRAVFKSFTRAKQPTRVPIRPARQQPVAPVRIAPSVSAVGAMHPTAALSPQ 340
BLAST of mRNA_Ecto-sp13_S_contig14576.3510.1 vs. uniprot
Match: D8LIU3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LIU3_ECTSI) HSP 1 Score: 348 bits (892), Expect = 1.540e-112 Identity = 166/172 (96.51%), Postives = 168/172 (97.67%), Query Frame = 1
Query: 271 DAADXXDDDTFEADKEYRATKTWSVRELQLLWELKTNQPDLPPNRVAELMWKATGIRKTGDQCRTRWTKVDNPSITKGAWSQHEDELLYKAVNEMTKEDSPPPWVAISEACFKGKRTSKQCRARFMNHLDPGLRHFPWTFAENAALKKAANAYNGRQIKWASIVKDVPELVG 786
DAA XX +FEADKEYRATKTWSVRELQLLWELKTNQPDLPPNRVAELMWKATGIRKTGDQCRTRWTKVDNPSITKGAWSQHEDELLYKAVNEMTKEDSPPPWVAISEACFKGKRTSKQCRARFMNHLDPGLRHFPWTFAENAALKKAANAYNGRQIKWASIVKDVPEL+G
Sbjct: 275 DAAXXXXXXSFEADKEYRATKTWSVRELQLLWELKTNQPDLPPNRVAELMWKATGIRKTGDQCRTRWTKVDNPSITKGAWSQHEDELLYKAVNEMTKEDSPPPWVAISEACFKGKRTSKQCRARFMNHLDPGLRHFPWTFAENAALKKAANAYNGRQIKWASIVKDVPELIG 446
BLAST of mRNA_Ecto-sp13_S_contig14576.3510.1 vs. uniprot
Match: A0A7S3PFE6_9STRA (Hypothetical protein n=1 Tax=Aplanochytrium stocchinoi TaxID=215587 RepID=A0A7S3PFE6_9STRA) HSP 1 Score: 89.0 bits (219), Expect = 1.900e-15 Identity = 50/124 (40.32%), Postives = 73/124 (58.87%), Query Frame = 1
Query: 457 CRTRWTKVDNPSITKGAWSQHEDELLYKAVNEMTKE-----DSPPPWVAISEACFKGKRTSKQCRARFMNHLDPGLRHFPWTFAENAALKKAANAYNGRQIKWASIVKDVPELVGRSPDAARNQ 813
C RWT+V P + KG WS+ ED +L + VNE K D W ++ +KG R++KQCR R+MNHLDPGL+ W+ E+ AL + A+AY KWA I +++P GR+ + +N+
Sbjct: 173 CYQRWTRVLAPGLKKGKWSESEDMMLLEVVNEYLKVIDSSGDKTINWKLVASK-YKG-RSAKQCRERWMNHLDPGLKKSEWSVEEDFALLQFASAYPK---KWARIAREIP---GRTENMVKNR 288
BLAST of mRNA_Ecto-sp13_S_contig14576.3510.1 vs. uniprot
Match: A0A6J0P9K7_RAPSA (uncharacterized protein LOC108863442 isoform X1 n=2 Tax=Raphanus sativus TaxID=3726 RepID=A0A6J0P9K7_RAPSA) HSP 1 Score: 87.4 bits (215), Expect = 7.010e-15 Identity = 57/158 (36.08%), Postives = 77/158 (48.73%), Query Frame = 1
Query: 337 WSVRELQLLWELKTNQPDLPPNRVAELMWKATGIRKTGDQCRTRWTKVDNPSITKGAWSQHEDELLYKAVNEMTKEDSPPPWVAISEACFKGKRTSKQCRARFMNHLDPGLRHFPWTFAENAALKKAANAYNGRQIKWASIVKDVPELVGRSPDAARN 810
W+ E + L E +VAE K+ QC RW KV +P++TKG W+Q EDE + E+ K P W IS++ G R KQCR R+ NHL+PG+ WT E L KA Y KWA I K +P GR+ ++ +N
Sbjct: 54 WTTEEDETLREAVHRFKAKSWKKVAEFF-----THKSEVQCMHRWQKVLDPNLTKGPWTQQEDETIV----ELVKRYGPAKWAMISDS-LPG-RIGKQCRERWYNHLNPGINKEAWTIEEELVLLKAHLTYGN---KWAEIAKVLP---GRTDNSIKN 194
BLAST of mRNA_Ecto-sp13_S_contig14576.3510.1 vs. uniprot
Match: D7M7S2_ARALL (Myb domain protein 3R-5 n=2 Tax=Camelineae TaxID=980083 RepID=D7M7S2_ARALL) HSP 1 Score: 87.0 bits (214), Expect = 1.230e-14 Identity = 56/163 (34.36%), Postives = 80/163 (49.08%), Query Frame = 1
Query: 322 RATKTWSVRELQLLWELKTNQPDLPPNRVAELMWKATGIRKTGDQCRTRWTKVDNPSITKGAWSQHEDELLYKAVNEMTKEDSPPPWVAISEACFKGKRTSKQCRARFMNHLDPGLRHFPWTFAENAALKKAANAYNGRQIKWASIVKDVPELVGRSPDAARN 810
RA W+ E + L ++AE + T + QC RW KV NP + KG W+Q ED+ + E+ K+ P W I+++ G R KQCR R+ NHL+PG+R WT E +AL + Y KWA I K +P GR+ +A +N
Sbjct: 73 RAKGGWTPEEDETLRRAVDKYKGKRWKKIAEFFPERTEV-----QCLHRWQKVLNPELVKGPWTQEEDDKIV----ELVKKYGPAKWSVIAKS-LPG-RIGKQCRERWHNHLNPGIRKDAWTIEEESALMNSHRMYGN---KWAEIAKVLP---GRTDNAIKN 218
BLAST of mRNA_Ecto-sp13_S_contig14576.3510.1 vs. uniprot
Match: MB3R5_ARATH (Transcription factor MYB3R-5 n=5 Tax=Arabidopsis thaliana TaxID=3702 RepID=MB3R5_ARATH) HSP 1 Score: 86.7 bits (213), Expect = 1.670e-14 Identity = 56/163 (34.36%), Postives = 80/163 (49.08%), Query Frame = 1
Query: 322 RATKTWSVRELQLLWELKTNQPDLPPNRVAELMWKATGIRKTGDQCRTRWTKVDNPSITKGAWSQHEDELLYKAVNEMTKEDSPPPWVAISEACFKGKRTSKQCRARFMNHLDPGLRHFPWTFAENAALKKAANAYNGRQIKWASIVKDVPELVGRSPDAARN 810
RA W+ E + L ++AE + T + QC RW KV NP + KG W+Q ED+ + E+ K+ P W I+++ G R KQCR R+ NHL+PG+R WT E +AL + Y KWA I K +P GR+ +A +N
Sbjct: 73 RAKGGWTPEEDETLRRAVEKYKGKRWKKIAEFFPERTEV-----QCLHRWQKVLNPELVKGPWTQEEDDKIV----ELVKKYGPAKWSVIAKS-LPG-RIGKQCRERWHNHLNPGIRKDAWTVEEESALMNSHRMYGN---KWAEIAKVLP---GRTDNAIKN 218
BLAST of mRNA_Ecto-sp13_S_contig14576.3510.1 vs. uniprot
Match: A0A565CH28_9BRAS (Uncharacterized protein n=1 Tax=Arabis nemorensis TaxID=586526 RepID=A0A565CH28_9BRAS) HSP 1 Score: 85.9 bits (211), Expect = 2.930e-14 Identity = 50/125 (40.00%), Postives = 69/125 (55.20%), Query Frame = 1
Query: 436 IRKTGDQCRTRWTKVDNPSITKGAWSQHEDELLYKAVNEMTKEDSPPPWVAISEACFKGKRTSKQCRARFMNHLDPGLRHFPWTFAENAALKKAANAYNGRQIKWASIVKDVPELVGRSPDAARN 810
+ +T QC RW KV NP + KG W+Q ED+ + E+ K+ P W I+ + G R KQCR R+ NHL+PG+R WT E +AL NA+ KWA I K +P GR+ +A +N
Sbjct: 103 LDRTEVQCLHRWQKVLNPELVKGPWTQEEDDKI----TELVKKYGPAKWSVIASS-LPG-RIGKQCRERWHNHLNPGIRKDAWTVEEESALM---NAHRMHGNKWAEIAKVLP---GRTDNAIKN 215
BLAST of mRNA_Ecto-sp13_S_contig14576.3510.1 vs. uniprot
Match: A0A078HSU7_BRANA (BnaA10g27190D protein n=16 Tax=Brassica TaxID=3705 RepID=A0A078HSU7_BRANA) HSP 1 Score: 85.1 bits (209), Expect = 4.910e-14 Identity = 56/163 (34.36%), Postives = 80/163 (49.08%), Query Frame = 1
Query: 322 RATKTWSVRELQLLWELKTNQPDLPPNRVAELMWKATGIRKTGDQCRTRWTKVDNPSITKGAWSQHEDELLYKAVNEMTKEDSPPPWVAISEACFKGKRTSKQCRARFMNHLDPGLRHFPWTFAENAALKKAANAYNGRQIKWASIVKDVPELVGRSPDAARN 810
RA W+ E + L + ++AE + T + QC RW KV NP + KG W+Q ED ++ E+ K+ P W I+++ G R KQCR R+ NHL+PG+R WT E AL A + KWA I K +P GR+ +A +N
Sbjct: 71 RAKGGWTPEEDETLRQAVDKYKGKRWKKIAEYFPERTEV-----QCLHRWQKVLNPELIKGTWTQEEDGIIV----ELVKKYGPAKWSLIAKS-LPG-RIGKQCRERWHNHLNPGIRKDAWTTEEETALINAQRTHGN---KWAEIAKVLP---GRTDNAIKN 216
BLAST of mRNA_Ecto-sp13_S_contig14576.3510.1 vs. uniprot
Match: UPI0006232864 (myb protein isoform X1 n=4 Tax=Linepithema humile TaxID=83485 RepID=UPI0006232864) HSP 1 Score: 85.5 bits (210), Expect = 5.480e-14 Identity = 55/161 (34.16%), Postives = 82/161 (50.93%), Query Frame = 1
Query: 337 WSVRELQLLWELKTNQPDLPPNRVAELMWKATGIR---KTGDQCRTRWTKVDNPSITKGAWSQHEDELLYKAVNEMTKEDSPPPWVAISEACFKGKRTSKQCRARFMNHLDPGLRHFPWTFAENAALKKAANAYNGRQIKWASIVKDVPELVGRSPDAARN 810
W+ E LL +L +N L + L W ++ QC+ RW KV NP + KG W++ EDE + + V++ P W I+ KG R KQCR R+ NHL+PG++ WT AE+ + +A Y + WA I K +P GR+ +A +N
Sbjct: 165 WTKEEDALLKQLVSNAEQLGTS----LRWDVISSHFPDRSDVQCQQRWAKVVNPELVKGPWTKEEDEKVVELVDKY----GPKKWTLIARH-LKG-RIGKQCRERWHNHLNPGIKKTAWTDAEDKIIVEAHRKYGNQ---WAKIAKLLP---GRTDNAIKN 309
BLAST of mRNA_Ecto-sp13_S_contig14576.3510.1 vs. uniprot
Match: A0A0C9R173_9HYME (MYB_0 protein n=1 Tax=Fopius arisanus TaxID=64838 RepID=A0A0C9R173_9HYME) HSP 1 Score: 84.0 bits (206), Expect = 1.450e-13 Identity = 55/161 (34.16%), Postives = 80/161 (49.69%), Query Frame = 1
Query: 337 WSVRELQLLWELKTNQPDLPPNRVAELMWKATGIR---KTGDQCRTRWTKVDNPSITKGAWSQHEDELLYKAVNEMTKEDSPPPWVAISEACFKGKRTSKQCRARFMNHLDPGLRHFPWTFAENAALKKAANAYNGRQIKWASIVKDVPELVGRSPDAARN 810
W+ E LL +L +N L L W A ++ QC+ RW KV NP + KG W++ EDE + + V+ P W I+ KG R KQCR R+ NHL+PG++ WT AE+ + +A + WA I K +P GR+ +A +N
Sbjct: 84 WTKEEDNLLKQLVSNAEKLGTG----LRWDAVAAHFPDRSDVQCQQRWAKVVNPDLVKGPWTKEEDEKVVELVDRY----GPKKWTLIARH-LKG-RIGKQCRERWHNHLNPGIKKTAWTDAEDKIIVEAHRRVGNQ---WAKIAKLLP---GRTDNAIKN 228 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig14576.3510.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig14576.3510.1 >prot_Ecto-sp13_S_contig14576.3510.1 ID=prot_Ecto-sp13_S_contig14576.3510.1|Name=mRNA_Ecto-sp13_S_contig14576.3510.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=457bp GGSAGGALSSSGGLHAVGIDALPSSASLPPASSVQQTRPKSPRQLLQQQPback to top mRNA from alignment at Ecto-sp13_S_contig14576:80..4240- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig14576.3510.1 ID=mRNA_Ecto-sp13_S_contig14576.3510.1|Name=mRNA_Ecto-sp13_S_contig14576.3510.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=4161bp|location=Sequence derived from alignment at Ecto-sp13_S_contig14576:80..4240- (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig14576:80..4240- >mRNA_Ecto-sp13_S_contig14576.3510.1 ID=mRNA_Ecto-sp13_S_contig14576.3510.1|Name=mRNA_Ecto-sp13_S_contig14576.3510.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1371bp|location=Sequence derived from alignment at Ecto-sp13_S_contig14576:80..4240- (Ectocarpus species13 EcNAP12_S_4_19m)back to top |