mRNA_Ecto-sp13_S_contig14559.3499.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig14559.3499.1
Unique NamemRNA_Ecto-sp13_S_contig14559.3499.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
[Close]
BLAST of mRNA_Ecto-sp13_S_contig14559.3499.1 vs. uniprot
Match: D8LPW8_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LPW8_ECTSI)

HSP 1 Score: 380 bits (977), Expect = 7.650e-131
Identity = 187/189 (98.94%), Postives = 188/189 (99.47%), Query Frame = 1 
Query:    1 RDVTERLQLLLRRAGHNLHTSAEMEVVRQMKEDLCYVAFNPSTEEQVKQPDTVYKLPDGQTIRVGPERYRAPECLFHPEQLGSESMGVHDCLLKGIMRTDMDMRRTLFGQVVLSGGSTLFPGFGDRLLNEVRKQAPKNLKIRITAPPERKFSTWVGGSILASLATFKDMWVTRAEFREHGPNIMDSKSL 567
            RDVTERLQLLLRRAGH+LHTSAEMEVVRQMKEDLCYVAFNPSTEEQVKQPDTVYKLPDGQ IRVGPERYRAPECLFHPEQLGSESMGVHDCLLKGIMRTDMDMRRTLFGQVVLSGGSTLFPGFGDRLLNEVRKQAPKNLKIRITAPPERKFSTWVGGSILASLATFKDMWVTRAEFREHGPNIMDSKSL
Sbjct:  187 RDVTERLQLLLRRAGHSLHTSAEMEVVRQMKEDLCYVAFNPSTEEQVKQPDTVYKLPDGQAIRVGPERYRAPECLFHPEQLGSESMGVHDCLLKGIMRTDMDMRRTLFGQVVLSGGSTLFPGFGDRLLNEVRKQAPKNLKIRITAPPERKFSTWVGGSILASLATFKDMWVTRAEFREHGPNIMDSKSL 375
[Close]
BLAST of mRNA_Ecto-sp13_S_contig14559.3499.1 vs. uniprot
Match: A0A1V9ZXS0_9STRA (Actin (Fragment) n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9ZXS0_9STRA)

HSP 1 Score: 259 bits (662), Expect = 7.210e-83
Identity = 124/199 (62.31%), Postives = 159/199 (79.90%), Query Frame = 1 
Query:    1 RDVTERLQLLLRRAGHNLHTSAEMEVVRQMKEDLCYVAFNPSTEEQV----------KQPDTVYKLPDGQTIRVGPERYRAPECLFHPEQLGSESMGVHDCLLKGIMRTDMDMRRTLFGQVVLSGGSTLFPGFGDRLLNEVRKQAPKNLKIRITAPPERKFSTWVGGSILASLATFKDMWVTRAEFREHGPNIMDSKSL 567
            RDVT  LQLL RRAG+   TSAE+E+V+++KE LCYVAFNP+ EEQ+           Q  T Y+LPDG  + +GPE++RAPE LF P+ +GSE  GV DCL+  I+R+DMD+R+TLF Q+VLSGGSTLFPGFGDRLL+EVRK+APK++KIRI+APP R++STW+GGSILASLATFK MW+T+AE+ EHG +I+  K+L
Sbjct:  193 RDVTSYLQLLCRRAGYVFQTSAELEIVKEIKEKLCYVAFNPTKEEQLLHTSGDPQSASQISTEYRLPDGSVLNLGPEKFRAPEILFRPDLIGSEYTGVQDCLVHAILRSDMDLRKTLFSQIVLSGGSTLFPGFGDRLLSEVRKKAPKDIKIRISAPPARQYSTWIGGSILASLATFKTMWITKAEYEEHGASIVHRKTL 391
[Close]
BLAST of mRNA_Ecto-sp13_S_contig14559.3499.1 vs. uniprot
Match: U6KLL3_EIMTE (Actin, putative n=1 Tax=Eimeria tenella TaxID=5802 RepID=U6KLL3_EIMTE)

HSP 1 Score: 253 bits (647), Expect = 9.600e-81
Identity = 125/193 (64.77%), Postives = 150/193 (77.72%), Query Frame = 1 
Query:    1 RDVTERLQLLLRRAGHNLHTSAEMEVVRQMKEDLCYVAFNPSTEEQVKQPDT----VYKLPDGQTIRVGPERYRAPECLFHPEQLGSESMGVHDCLLKGIMRTDMDMRRTLFGQVVLSGGSTLFPGFGDRLLNEVRKQAPKNLKIRITAPPERKFSTWVGGSILASLATFKDMWVTRAEFREHGPNIMDSKSL 567
            RDVTERL +LLRRAGH  HTSAE E+VRQ+KE  CYVAFNP  EE   Q  +     ++LPDG TI VG ERYRAPE LFHP  +G E  GVH+ ++  I R D+D+RRTLF Q+VL+GGST F GFGDRLLNE+RK APK++KIRI+APPERKFSTW+GGSILASL++FK MWV R E+ E GP+I+  K+L
Sbjct:  188 RDVTERLAILLRRAGHIFHTSAEFEIVRQIKEQACYVAFNPQKEEITTQDKSGGGYPFQLPDGTTISVGAERYRAPEILFHPSLVGLEYPGVHELVVNSISRADLDLRRTLFSQIVLAGGSTYFHGFGDRLLNEIRKAAPKDIKIRISAPPERKFSTWIGGSILASLSSFKKMWVPRQEYEECGPSILHRKTL 380
[Close]
BLAST of mRNA_Ecto-sp13_S_contig14559.3499.1 vs. uniprot
Match: W7U6E6_9STRA (Arp1 actin-related protein 1 centractin beta n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7U6E6_9STRA)

HSP 1 Score: 253 bits (646), Expect = 1.170e-80
Identity = 115/190 (60.53%), Postives = 160/190 (84.21%), Query Frame = 1 
Query:    1 RDVTERLQLLLRRAGHNLHTSAEMEVVRQMKEDLCYVAFNPSTEEQVK-QPDTVYKLPDGQTIRVGPERYRAPECLFHPEQLGSESMGVHDCLLKGIMRTDMDMRRTLFGQVVLSGGSTLFPGFGDRLLNEVRKQAPKNLKIRITAPPERKFSTWVGGSILASLATFKDMWVTRAEFREHGPNIMDSKSL 567
            RDVT+ LQLLLRR+G+ LHTSAE ++VRQ+KE+ CY++F+P  EE+   QPDT ++LPDG  I +G ER+RAPE LF PE +GSE  GVH+C+++ IM+ D+D+R+  FGQ+VL+GGST+FPG+GDRLLNE RK AP+++KIRI+APPERK+STW+GGSILASL+TFK +W+T+ +++EHG  I+ +++L
Sbjct:  187 RDVTDHLQLLLRRSGYKLHTSAEKDIVRQIKEEKCYLSFDPRKEEEAPPQPDT-FRLPDGTHILMGSERFRAPEILFQPELIGSEEKGVHECVIQSIMKADLDLRKAFFGQIVLAGGSTVFPGYGDRLLNETRKLAPRDVKIRISAPPERKYSTWIGGSILASLSTFKSLWITQRDYQEHGNQIVHTRTL 375
[Close]
BLAST of mRNA_Ecto-sp13_S_contig14559.3499.1 vs. uniprot
Match: A0A836CG82_9STRA (Actin family n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CG82_9STRA)

HSP 1 Score: 252 bits (644), Expect = 2.570e-80
Identity = 123/189 (65.08%), Postives = 146/189 (77.25%), Query Frame = 1 
Query:    1 RDVTERLQLLLRRAGHNLHTSAEMEVVRQMKEDLCYVAFNPSTEEQVKQPDTVYKLPDGQTIRVGPERYRAPECLFHPEQLGSESMGVHDCLLKGIMRTDMDMRRTLFGQVVLSGGSTLFPGFGDRLLNEVRKQAPKNLKIRITAPPERKFSTWVGGSILASLATFKDMWVTRAEFREHGPNIMDSKSL 567
            RDVTERL LLL  AG  L TSAE EV RQ+KE+ CYVAF+P+ EE V+  D  YKLPDGQ I +GPER+RAPE LF+P+ +GSE+MG  +CL   I R DM++RR LF  VVLSGGST   GFGDRLLNE R+ AP+  KIRI APPER+ STW+GGSILASL+TF+ MWVTRAE+ EHG  IMD++ L
Sbjct:  190 RDVTERLALLLGCAGCALRTSAEREVARQIKEEACYVAFDPAKEEDVRPADVPYKLPDGQVIMLGPERFRAPEVLFNPQLIGSEAMGAAECLTTAIARADMELRRALFASVVLSGGSTCLAGFGDRLLNEARRAAPRGTKIRIAAPPERRLSTWIGGSILASLSTFRTMWVTRAEYEEHGKGIMDARGL 378
[Close]
BLAST of mRNA_Ecto-sp13_S_contig14559.3499.1 vs. uniprot
Match: A0A0G4H1C2_VITBC (Uncharacterized protein n=2 Tax=Vitrella brassicaformis TaxID=1169539 RepID=A0A0G4H1C2_VITBC)

HSP 1 Score: 252 bits (643), Expect = 3.970e-80
Identity = 123/193 (63.73%), Postives = 151/193 (78.24%), Query Frame = 1 
Query:    1 RDVTERLQLLLRRAGHNLHTSAEMEVVRQMKEDLCYVAFNPSTEEQVKQPDTV----YKLPDGQTIRVGPERYRAPECLFHPEQLGSESMGVHDCLLKGIMRTDMDMRRTLFGQVVLSGGSTLFPGFGDRLLNEVRKQAPKNLKIRITAPPERKFSTWVGGSILASLATFKDMWVTRAEFREHGPNIMDSKSL 567
            RDVTE LQL LRRAGH  HTSAEMEVVRQ+KE  CYVAFNP  EE  +   T     + LPDG  I +GPER+RAPE LFHP Q+G E  G+H+ L++ I R D+D+R+TL+ Q+VLSGGST+F GFGDRLLNEVR+ APK++KIRI+APPERKFST++GG+ILASLATFK MWV++ E+ E GP I+  K+ 
Sbjct:  189 RDVTEHLQLQLRRAGHVFHTSAEMEVVRQIKESTCYVAFNPQKEEHQEHDKTSASFPFHLPDGTQILLGPERFRAPEILFHPNQVGLEYPGIHELLVQSISRADLDLRKTLYSQIVLSGGSTMFAGFGDRLLNEVRRLAPKDIKIRISAPPERKFSTYLGGAILASLATFKKMWVSKEEYEEEGPGILHKKAF 381
[Close]
BLAST of mRNA_Ecto-sp13_S_contig14559.3499.1 vs. uniprot
Match: A0A2D4CJD5_PYTIN (Actin-like protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4CJD5_PYTIN)

HSP 1 Score: 252 bits (643), Expect = 6.140e-80
Identity = 121/213 (56.81%), Postives = 159/213 (74.65%), Query Frame = 1 
Query:    1 RDVTERLQLLLRRAGHNLHTSAEMEVVRQMKEDLCYVAFNPSTEEQVK------------------------QPDTVYKLPDGQTIRVGPERYRAPECLFHPEQLGSESMGVHDCLLKGIMRTDMDMRRTLFGQVVLSGGSTLFPGFGDRLLNEVRKQAPKNLKIRITAPPERKFSTWVGGSILASLATFKDMWVTRAEFREHGPNIMDSKSL 567
            RDVT  LQLLLRRAG+N  TSAE E+VR++KE LCYVAFNP+ EEQ++                           + Y LPDG  + +GPE++RAPE LF PE +GSE  GVH+CL++ IM++DMD+R+TLF Q++LSGGST+FPGFGDRLL EVRK+APK++KIRI+APP R +STW+GGSILASLATFK+MW+T++E+ E+G +I+  K+ 
Sbjct:  184 RDVTAHLQLLLRRAGYNFQTSAEREIVREIKEKLCYVAFNPTKEEQLEAEKSAASVKDLLSGTKAKPVTPSSDDSSAYYLPDGTILNIGPEKFRAPEVLFRPELIGSEGGGVHECLVQAIMKSDMDLRKTLFSQIILSGGSTMFPGFGDRLLAEVRKKAPKDIKIRISAPPTRLYSTWIGGSILASLATFKNMWITKSEYEEYGASILYRKAF 396
[Close]
BLAST of mRNA_Ecto-sp13_S_contig14559.3499.1 vs. uniprot
Match: A0A5D6YMY9_9STRA (Uncharacterized protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6YMY9_9STRA)

HSP 1 Score: 251 bits (641), Expect = 8.950e-80
Identity = 126/216 (58.33%), Postives = 160/216 (74.07%), Query Frame = 1 
Query:    1 RDVTERLQLLLRRAGHNLHTSAEMEVVRQMKEDLCYVAFNPSTEEQV---------KQPD------------------TVYKLPDGQTIRVGPERYRAPECLFHPEQLGSESMGVHDCLLKGIMRTDMDMRRTLFGQVVLSGGSTLFPGFGDRLLNEVRKQAPKNLKIRITAPPERKFSTWVGGSILASLATFKDMWVTRAEFREHGPNIMDSKSL 567
            RDVT +LQLLLRRAG+   TSAE EVVR++KE LCYVAFNP+ EEQ+         K  D                  + Y LPDG  + +G E++RAPE LF PE +GSES GV DCL++ IM++DMD+R+TLF Q++LSGGSTLFPGFGDRLL EVRK+APK++KIRI+APP R +STW+GGSILASLATFK+MW+T++E+ EHG +I+  K+L
Sbjct:  170 RDVTAQLQLLLRRAGYRFETSAEREVVREVKEKLCYVAFNPAKEEQLEAERAAVAGKDDDLLSASKAKRRAAAPTDDASAYYLPDGTLLNIGAEKFRAPEVLFRPELIGSESGGVQDCLVQAIMKSDMDLRKTLFSQIILSGGSTLFPGFGDRLLAEVRKKAPKDIKIRISAPPTRLYSTWIGGSILASLATFKNMWITKSEYEEHGASILHRKAL 385
[Close]
BLAST of mRNA_Ecto-sp13_S_contig14559.3499.1 vs. uniprot
Match: K3X404_GLOUD (Uncharacterized protein n=30 Tax=Oomycota TaxID=4762 RepID=K3X404_GLOUD)

HSP 1 Score: 250 bits (638), Expect = 4.020e-79
Identity = 121/213 (56.81%), Postives = 159/213 (74.65%), Query Frame = 1 
Query:    1 RDVTERLQLLLRRAGHNLHTSAEMEVVRQMKEDLCYVAFNPSTEEQVKQPDTV------------------------YKLPDGQTIRVGPERYRAPECLFHPEQLGSESMGVHDCLLKGIMRTDMDMRRTLFGQVVLSGGSTLFPGFGDRLLNEVRKQAPKNLKIRITAPPERKFSTWVGGSILASLATFKDMWVTRAEFREHGPNIMDSKSL 567
            RDVT  LQLLLRRAG+N  TSAE E+VR++KE LCYVAFNP+ EEQ++   +                         Y LPDG  + +G E++RAPE LF PE +GSE  GVH+CL++ IM++DMD+R+TLF Q++LSGGST+FPGFGDRLL EVRK+APK++KIRI+APP R +STW+GGSILASLATFK+MW+T++E+ E+G +I+  K+L
Sbjct:  189 RDVTAHLQLLLRRAGYNFQTSAEREIVREIKEKLCYVAFNPAKEEQLEAEKSAIAVKDLLSSSKTKTGSAPSDDASAYYLPDGTLLNIGAEKFRAPEVLFRPEIIGSEGGGVHECLVQAIMKSDMDLRKTLFSQIILSGGSTMFPGFGDRLLAEVRKKAPKDIKIRISAPPTRLYSTWIGGSILASLATFKNMWITKSEYEEYGASILHRKAL 401
[Close]
BLAST of mRNA_Ecto-sp13_S_contig14559.3499.1 vs. uniprot
Match: F0WRQ9_9STRA (Actinlike protein putative n=2 Tax=Albugo TaxID=65356 RepID=F0WRQ9_9STRA)

HSP 1 Score: 248 bits (634), Expect = 1.440e-78
Identity = 121/205 (59.02%), Postives = 160/205 (78.05%), Query Frame = 1 
Query:    1 RDVTERLQLLLRRAGHNLHTSAEMEVVRQMKEDLCYVAFNPSTEEQVKQP---------------DTV-YKLPDGQTIRVGPERYRAPECLFHPEQLGSESMGVHDCLLKGIMRTDMDMRRTLFGQVVLSGGSTLFPGFGDRLLNEVRKQAPKNLKIRITAPPERKFSTWVGGSILASLATFKDMWVTRAEFREHGPNIMDSKSL 567
            RDVT++LQ LLRR+G++  TSAE E+VR++KE LCYVAFNPS EEQ++                 DT+ Y LPDG  + +G E++RAPE LF PE +GSE  GVH+ L++ IM++DMD+R+TLF Q++LSGGSTLFPGFGDRLL EVRK APK++KIRI+APP R  STW+GGSILASLATFK+MW+T++E+ E+GP+I+  ++L
Sbjct:  193 RDVTDQLQKLLRRSGYHFQTSAEREIVREIKEKLCYVAFNPSKEEQIEADKLASAMNDPKSTSVDDTMAYYLPDGTLLNIGAEKFRAPEVLFRPELIGSECRGVHESLVQAIMKSDMDLRKTLFSQIILSGGSTLFPGFGDRLLAEVRKLAPKDIKIRISAPPTRLHSTWIGGSILASLATFKNMWITKSEYEEYGPSILHRRAL 397
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig14559.3499.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LPW8_ECTSI7.650e-13198.94Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A1V9ZXS0_9STRA7.210e-8362.31Actin (Fragment) n=1 Tax=Thraustotheca clavata Tax... [more]
U6KLL3_EIMTE9.600e-8164.77Actin, putative n=1 Tax=Eimeria tenella TaxID=5802... [more]
W7U6E6_9STRA1.170e-8060.53Arp1 actin-related protein 1 centractin beta n=1 T... [more]
A0A836CG82_9STRA2.570e-8065.08Actin family n=1 Tax=Tribonema minus TaxID=303371 ... [more]
A0A0G4H1C2_VITBC3.970e-8063.73Uncharacterized protein n=2 Tax=Vitrella brassicaf... [more]
A0A2D4CJD5_PYTIN6.140e-8056.81Actin-like protein n=1 Tax=Pythium insidiosum TaxI... [more]
A0A5D6YMY9_9STRA8.950e-8058.33Uncharacterized protein n=1 Tax=Pythium brassicum ... [more]
K3X404_GLOUD4.020e-7956.81Uncharacterized protein n=30 Tax=Oomycota TaxID=47... [more]
F0WRQ9_9STRA1.440e-7859.02Actinlike protein putative n=2 Tax=Albugo TaxID=65... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig14559contigEcto-sp13_S_contig14559:343..3636 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start0
Seed ortholog score381.7
Seed ortholog evalue2e-103
Seed eggNOG ortholog2880.D8LPW8
Preferred nameACTR1A
Model size570
KEGG koko:K16575
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000086,GO:0000278,GO:0001775,GO:0002177,GO:0002252,GO:0002263,GO:0002274,GO:0002275,GO:0002283,GO:0002366,GO:0002376,GO:0002443,GO:0002444,GO:0002446,GO:0002478,GO:0002495,GO:0002504,GO:0003674,GO:0003824,GO:0005198,GO:0005200,GO:0005575,GO:0005576,GO:0005622,GO:0005623,GO:0005737,GO:0005798,GO:0005813,GO:0005814,GO:0005815,GO:0005829,GO:0005856,GO:0005869,GO:0005875,GO:0005884,GO:0005938,GO:0006793,GO:0006796,GO:0006810,GO:0006887,GO:0006888,GO:0006928,GO:0006955,GO:0006996,GO:0007010,GO:0007017,GO:0007018,GO:0007049,GO:0007276,GO:0007283,GO:0007346,GO:0008088,GO:0008089,GO:0008090,GO:0008150,GO:0008152,GO:0008976,GO:0009987,GO:0010389,GO:0010564,GO:0010970,GO:0012505,GO:0015629,GO:0015630,GO:0016043,GO:0016192,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016776,GO:0019882,GO:0019884,GO:0019886,GO:0019896,GO:0019953,GO:0022402,GO:0022406,GO:0022414,GO:0022607,GO:0030030,GO:0030031,GO:0030135,GO:0030137,GO:0030141,GO:0030705,GO:0031410,GO:0031974,GO:0031982,GO:0031983,GO:0032501,GO:0032504,GO:0032940,GO:0032991,GO:0034643,GO:0034774,GO:0036230,GO:0042119,GO:0043209,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043232,GO:0043233,GO:0043299,GO:0043312,GO:0044085,GO:0044237,GO:0044422,GO:0044424,GO:0044430,GO:0044433,GO:0044444,GO:0044446,GO:0044448,GO:0044450,GO:0044464,GO:0044703,GO:0044770,GO:0044772,GO:0044782,GO:0044839,GO:0045055,GO:0045321,GO:0046903,GO:0046907,GO:0047497,GO:0048002,GO:0048193,GO:0048232,GO:0048609,GO:0050789,GO:0050794,GO:0050896,GO:0051179,GO:0051234,GO:0051640,GO:0051641,GO:0051646,GO:0051649,GO:0051654,GO:0051656,GO:0051704,GO:0051726,GO:0060205,GO:0060271,GO:0065007,GO:0070013,GO:0070925,GO:0071840,GO:0071944,GO:0072384,GO:0097708,GO:0097711,GO:0098930,GO:0099080,GO:0099081,GO:0099111,GO:0099503,GO:0099512,GO:0099513,GO:0099568,GO:0099738,GO:0101002,GO:0120031,GO:0120036,GO:0140056,GO:1901987,GO:1901990,GO:1902749,GO:1903047,GO:1904813
Exons5
EggNOG free text desc.cytoskeleton organization
EggNOG OGsCOG5277@1,KOG0676@2759
Ec32 ortholog descriptionActin family
Ec32 orthologEc-15_001860.1
Cds size570
COG Functional cat.Z
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03036,ko04147,ko04812
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462776.7410483-CDS-Ecto-sp13_S_contig14559:342..4111681462776.7410483-CDS-Ecto-sp13_S_contig14559:342..411Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14559 343..411 -
1681462776.7595832-CDS-Ecto-sp13_S_contig14559:793..9041681462776.7595832-CDS-Ecto-sp13_S_contig14559:793..904Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14559 794..904 -
1681462776.7707517-CDS-Ecto-sp13_S_contig14559:1464..16651681462776.7707517-CDS-Ecto-sp13_S_contig14559:1464..1665Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14559 1465..1665 -
1681462776.7888277-CDS-Ecto-sp13_S_contig14559:1995..21091681462776.7888277-CDS-Ecto-sp13_S_contig14559:1995..2109Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14559 1996..2109 -
1681462776.8006015-CDS-Ecto-sp13_S_contig14559:3561..36361681462776.8006015-CDS-Ecto-sp13_S_contig14559:3561..3636Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14559 3562..3636 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig14559.3499.1prot_Ecto-sp13_S_contig14559.3499.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig14559 343..3636 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig14559.3499.1

>prot_Ecto-sp13_S_contig14559.3499.1 ID=prot_Ecto-sp13_S_contig14559.3499.1|Name=mRNA_Ecto-sp13_S_contig14559.3499.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=190bp
RDVTERLQLLLRRAGHNLHTSAEMEVVRQMKEDLCYVAFNPSTEEQVKQP
DTVYKLPDGQTIRVGPERYRAPECLFHPEQLGSESMGVHDCLLKGIMRTD
MDMRRTLFGQVVLSGGSTLFPGFGDRLLNEVRKQAPKNLKIRITAPPERK
FSTWVGGSILASLATFKDMWVTRAEFREHGPNIMDSKSL*
back to top

mRNA from alignment at Ecto-sp13_S_contig14559:343..3636-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig14559.3499.1 ID=mRNA_Ecto-sp13_S_contig14559.3499.1|Name=mRNA_Ecto-sp13_S_contig14559.3499.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3294bp|location=Sequence derived from alignment at Ecto-sp13_S_contig14559:343..3636- (Ectocarpus species13 EcNAP12_S_4_19m)
AGGGATGTGACGGAGCGGCTTCAGCTGCTTCTCCGGAGAGCTGGGCACAA
CCTTCACACCTCCGCGGAAATGGAGGTGAGGCCAAGCATGCTATCTAGAC
TCTGGACAGGGAATGAGTTACGGGTGCACATGGATGTACTGGTTCCCTCA
AGAGCTTTCGTATGGATGCTGGTGGCGGTCTAGGAGGAACGTCCTCTTGA
ATGTTGGGCTTGACTCACAACAGGACTCCTTTCGGTATTAGAAACATTTG
GAGCTGCCCCCCCCCTGCATCGTTGATAGCAAGGTTTACTTGACGCACGA
GACTTCACGGCAAGTCTTCCGTGTCACGCTGGCAATCGAATCGGCGCGTT
AACACTTGTTTGCGCATGCGATAAACAAGAGTCGGCCGATGGCGTTTTGC
TTTTGACAATAAAGGTTGGTTTTTGAGGCGGAGTACCAGGGTCATGGTAT
CACAAGGAACTTCGACCACTGTTTACAAGCCGTTTCTGTCACCACAAACT
GTGTATAGAGTGGTCAATTCACATTCGGAATAACGATGGACGAGGCAACA
GTCTAGCGTCGTTCAAGGCACGCATGAGCTGTCGGACCAGGAACCTAGCT
CTTGGAGTATACTAGTATTCCCGGTGCTGCAAGAGTCTAGGACTACCATC
GAATGACCCGCCCTCACCGGGTGACCACCGAGCAGGTTTTGTGGAGTTAC
ACCCAAGCAGGACAAAAGCAATGACACGCCGGTCTCAAGAGGGAGAGCGC
TCCCTGTGTGTCTGTCGCTCGTGTTACGTATGAAAGACAAGAGTACCCAC
CCTCACCTGTCCCGTCACCGAAAGGTTCTGCGGGGGCGGACTTTTTGTGG
AGACTACGACCCATCCGTGTGGTTTGGACGTTTGGACCCGGGAAGAGAGT
GCTGTGTAGCTGAGACAATATCAAGACTTCGCAATGAATGGTTGTTGTGG
AGGAGCCATGGCGCGAACCGGTTAATCATCAAACTCCAAATACAGCATCA
TGCAGCGCGCCTTTGCTTTCACTAATGATGGTGCTGCACAATGCATGCTC
GTCGGTGCAACCCATACAAATGCCCCTTTAGCTCTTACCCCGGATCATTT
ACGGCGAGGACAAAAACATTTCCCGCGAAAGCAAAACGTGATACATCAAA
ACCCATCAAAACTCTCACACATATTATTGTAGGCATGCAGTTCTTTGTAA
ACACCCCCTTGCCTCCAGAGCAGGTTGTACGGTTGTACGTCTTACACCTA
TGCGTCTCAAACACGTGCTTCTCAACTTGAAGGAGGACCTGTTCGAGCGG
CAAGAAAAACCAACACAGAGCAGTAACACGCCTGTCTTCAGAGAGAAAAT
TACCCACCATGCGTCTTAATCAGGTGGTGCGGCATATGCAGGGGGAACCT
GTGCTACGCAGCCCTCCTTTATGCCAAATGCAATGGCACGCCGGTCTGAA
GTAAGAGCGACAACGCACCGCCGCTGCCACAACGCAATGCGCGTCGTTGT
GTGTACCTCCTTTCTTACCACACACAGGTGGTGCGGCAGATGAAGGAGGA
CCTGTGCTACGTAGCGTTTAACCCCTCGACGGAGGAACAAGTCAAGCAAC
CCGACACCGTCTACAAGCTTCCCGACGGCCAGACCATTCGGGTGAGTTTT
GTTTTTTTCACCGATGAAATAAGTTTTCACAAGTGTTGCCTGAGTGCGAT
TGTCAGGCTTCCGTGTTATGCACTTTTGCGTTGATCTTTCTGGTATATAG
CTCTGAGTTGTCGGGATTTAAAGCCACCTTGTCAGAATCTGGATGCGCTT
GTCGTTTTGGTACTGTCCTACCGCTTACCACAGCTGTCAACAGAACACGC
ACACACACACACACACACATACACACACAACCACGGTTGTGTGTGCCCCG
TGGAAGCGACAGACAGACATGCATGCTTCCACGCTCAAGCACACACACAC
ACGTCCGCCCCTCCCGAAAAGGTGGGCCCCGAGCGGTATCGCGCTCCGGA
GTGCCTTTTCCACCCGGAGCAGCTGGGCTCGGAGTCCATGGGCGTGCACG
ATTGTCTCCTCAAGGGCATCATGCGGACGGACATGGACATGCGCCGGACG
CTGTTCGGGCAGGTGGTGCTGTCTGGCGGCAGCACCCTCTTCCCCGGCTT
CGGTGATCGCCTCCTCAACGAGGTGAGTGATGAAACCCGATTTGGGAGCA
ACGGTCTGGTTCTGGGAACGGTTTTCAAAGCGGAGGAACATCGAGTTCTT
ATTCTAAAAGTTCCTAATGCGGAGGAACATAGTTATCTATGTGTTAGGTC
CTCATAGCGGAGGCATAGAGTTACAAATCTCAAAGTTTCTCAATGCGGAG
GAACAAAGATTTCTGAATATAATAGGTCCTCAACGCATAGGCACAACAGT
TCTAAATCAGATGTTTCCAGGTTTGGGGGGAAAAGCGATCTGGCGCCGCT
TTGTCCTGGACATCCTGTTGCTGTCAGGAGACGAATTATATTCAGTTATT
GTTGTGTGAACGACGTCGTTCCGTCCTCTCGTTTCAGGTAGAAGACCCCT
GGCGAACGACGGGGGAGGATGATGCGCCTCTGAGGGAGGACATTGCTGAA
TGCAGCATGTTTGTCACTCTTGTCTGTGTTCCCTCCGCCGCACCACTGCG
AGCACCTTCCCTTGTTCAGTCACTCATGTTCACTCTACCTCTCCACGCAC
AACTTCTTTGACAACGACACCCCCCAAATCAGGTCCGGAAACAAGCGCCA
AAGAACCTCAAGATCCGCATCACGGCACCACCGGAGCGCAAGTTCTCGAC
GTGGGTAGGAGGGTCCATCCTCGCGTCCTTGGCCACCTTCAAGGTGGGTT
GTGCAGCTGCTGCTGCCGCTGCCGCGGTTGTCTTCGTTGTTCTTGTTGTT
TCGTTATTGCTGGTGGTTGTTTCTGGCTGACGTTATCGCGTTTCGAGTCT
TCTCGTGAGAATAGTCCTGCCATCCTGGGCTCTACCCATCTATCAACTTG
TGCTCTCCTTTTGACCAAACAATAGTTTGGGACATCACTCCATTTTCGCA
CGCACGTCAAGCTCGCCCACCGCCCGCCCTGCTCCCATGCGCTCACCCCC
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
CCCCCATCGACACGTTCTCGACCACGTACCCTCCCTCCGCCCTCCTTTGG
CGCGTGCGCGTTGGGCCTCCCGCAGGACATGTGGGTTACGCGCGCAGAGT
TCAGAGAACACGGGCCTAACATCATGGACAGCAAGTCTCTGTAG
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig14559:343..3636-

>mRNA_Ecto-sp13_S_contig14559.3499.1 ID=mRNA_Ecto-sp13_S_contig14559.3499.1|Name=mRNA_Ecto-sp13_S_contig14559.3499.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=570bp|location=Sequence derived from alignment at Ecto-sp13_S_contig14559:343..3636- (Ectocarpus species13 EcNAP12_S_4_19m)
AGGGATGTGACGGAGCGGCTTCAGCTGCTTCTCCGGAGAGCTGGGCACAA
CCTTCACACCTCCGCGGAAATGGAGGTGGTGCGGCAGATGAAGGAGGACC
TGTGCTACGTAGCGTTTAACCCCTCGACGGAGGAACAAGTCAAGCAACCC
GACACCGTCTACAAGCTTCCCGACGGCCAGACCATTCGGGTGGGCCCCGA
GCGGTATCGCGCTCCGGAGTGCCTTTTCCACCCGGAGCAGCTGGGCTCGG
AGTCCATGGGCGTGCACGATTGTCTCCTCAAGGGCATCATGCGGACGGAC
ATGGACATGCGCCGGACGCTGTTCGGGCAGGTGGTGCTGTCTGGCGGCAG
CACCCTCTTCCCCGGCTTCGGTGATCGCCTCCTCAACGAGGTCCGGAAAC
AAGCGCCAAAGAACCTCAAGATCCGCATCACGGCACCACCGGAGCGCAAG
TTCTCGACGTGGGTAGGAGGGTCCATCCTCGCGTCCTTGGCCACCTTCAA
GGACATGTGGGTTACGCGCGCAGAGTTCAGAGAACACGGGCCTAACATCA
TGGACAGCAAGTCTCTGTAG
back to top