mRNA_Ecto-sp13_S_contig14542.3494.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig14542.3494.1
Unique NamemRNA_Ecto-sp13_S_contig14542.3494.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig14542.3494.1 vs. uniprot
Match: A0A6H5KK66_9PHAE (Imidazole acetol-phosphate transaminase n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KK66_9PHAE)

HSP 1 Score: 166 bits (420), Expect = 3.450e-48
Identity = 84/87 (96.55%), Postives = 86/87 (98.85%), Query Frame = 1
Query:    4 ERIRLQEALRRYSFVKEVKESDANFFLVQVDHAQDIYKRMANDGVVVRFRGNELHCKDCLRVTVGTAEENNRLLELLEKTVAAISAP 264
            ERIRLQEALRRYSFVKEVKESDANFFLVQVDHAQ+IYKRMAN+GVVVRFRGNELHCKDCLRVTVGTAEENNRLLELLEKTVA ISAP
Sbjct:  314 ERIRLQEALRRYSFVKEVKESDANFFLVQVDHAQEIYKRMANNGVVVRFRGNELHCKDCLRVTVGTAEENNRLLELLEKTVATISAP 400          
BLAST of mRNA_Ecto-sp13_S_contig14542.3494.1 vs. uniprot
Match: A0A836C9P4_9STRA (Imidazole acetol-phosphate transaminase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C9P4_9STRA)

HSP 1 Score: 109 bits (272), Expect = 2.170e-26
Identity = 53/85 (62.35%), Postives = 65/85 (76.47%), Query Frame = 1
Query:    1 QERIRLQEALRRYSFVKEVKESDANFFLVQVDHAQDIYKRMANDGVVVRFRGNELHCKDCLRVTVGTAEENNRLLELLEKTVAAI 255
            ++R +L E LR   +V+ V  SDANFFLV+++HA  IY  MA +GVVVRFRGNELHC DCLR+TVGTAEEN +LLELL  TV  +
Sbjct:  321 EQRDKLMETLRNEPYVRRVLPSDANFFLVEIEHAHTIYLHMAENGVVVRFRGNELHCTDCLRITVGTAEENAKLLELLRATVKGV 405          
BLAST of mRNA_Ecto-sp13_S_contig14542.3494.1 vs. uniprot
Match: A0A6V1XHV7_HETAK (Imidazole acetol-phosphate transaminase n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1XHV7_HETAK)

HSP 1 Score: 103 bits (256), Expect = 3.230e-24
Identity = 52/82 (63.41%), Postives = 61/82 (74.39%), Query Frame = 1
Query:    4 ERIRLQEALRRYSFVKEVKESDANFFLVQVDHAQDIYKRMANDGVVVRFRGNELHCKDCLRVTVGTAEENNRLLELLEKTVA 249
            ER R+  AL     V +V  SDANF L Q+DHAQ IYK MA +G VVRFRGNELHC DC+R TVGTAEEN+++LE+LE T A
Sbjct:  298 ERARVMAALEAMPAVHKVHPSDANFVLFQIDHAQAIYKDMAENGCVVRFRGNELHCTDCIRATVGTAEENDKMLEMLEATHA 379          
BLAST of mRNA_Ecto-sp13_S_contig14542.3494.1 vs. uniprot
Match: UPI0009E5AE7C (uncharacterized protein LOC110054690 n=1 Tax=Orbicella faveolata TaxID=48498 RepID=UPI0009E5AE7C)

HSP 1 Score: 95.9 bits (237), Expect = 1.910e-23
Identity = 44/86 (51.16%), Postives = 70/86 (81.40%), Query Frame = 1
Query:    1 QERIRLQEALRRYSFVKEVKESDANFFLVQVDHAQDIYKRMAND-GVVVRFRGNELHCKDCLRVTVGTAEENNRLLELLEKTVAAI 255
            +++ R+ E L++   V+++  SD+NF L+++DHAQ IYK+MA++ GVV+R++GN++HCKDC+R+TVGT E+N  LL+ L+KTVA I
Sbjct:   48 EQKQRIIEELKKLPTVRKIFPSDSNFILLRIDHAQKIYKKMASEKGVVIRYQGNKIHCKDCVRITVGTPEQNRVLLDTLKKTVAEI 133          
BLAST of mRNA_Ecto-sp13_S_contig14542.3494.1 vs. uniprot
Match: A0A0L0FHM3_9EUKA (Imidazole acetol-phosphate transaminase n=1 Tax=Sphaeroforma arctica JP610 TaxID=667725 RepID=A0A0L0FHM3_9EUKA)

HSP 1 Score: 94.7 bits (234), Expect = 3.280e-21
Identity = 39/78 (50.00%), Postives = 62/78 (79.49%), Query Frame = 1
Query:   25 ALRRYSFVKEVKESDANFFLVQVDHAQDIYKRMANDGVVVRFRGNELHCKDCLRVTVGTAEENNRLLELLEKTVAAIS 258
            AL++   V+++  +DANF LVQ+DH+ ++YKRMA+ GVV+R+RG++ HC DC+R+T+GTA+EN ++L LL +  A +S
Sbjct:  279 ALQQMETVRKIHPTDANFLLVQIDHSLEVYKRMADRGVVIRYRGDQTHCDDCVRITIGTADENEKMLSLLREIAAELS 356          
BLAST of mRNA_Ecto-sp13_S_contig14542.3494.1 vs. uniprot
Match: A0A3M6TIJ9_POCDA (Imidazole acetol-phosphate transaminase n=2 Tax=Pocillopora damicornis TaxID=46731 RepID=A0A3M6TIJ9_POCDA)

HSP 1 Score: 91.7 bits (226), Expect = 6.870e-20
Identity = 40/86 (46.51%), Postives = 70/86 (81.40%), Query Frame = 1
Query:    1 QERIRLQEALRRYSFVKEVKESDANFFLVQVDHAQDIYKRMAND-GVVVRFRGNELHCKDCLRVTVGTAEENNRLLELLEKTVAAI 255
            +++ R+ E L +   V+++  SD+NF  +++DHA +IYK+MA++ GVV+R++G+++HCKDC+R+TVGT+EEN+ LL+ L+KT+A +
Sbjct:  311 EQKERIIEELEKIPTVRKIFPSDSNFVFLRIDHAYEIYKKMASEKGVVIRYQGSKVHCKDCVRITVGTSEENDELLKTLKKTIAEL 396          
BLAST of mRNA_Ecto-sp13_S_contig14542.3494.1 vs. uniprot
Match: W7TKC7_9STRA (Imidazole acetol-phosphate transaminase n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TKC7_9STRA)

HSP 1 Score: 90.1 bits (222), Expect = 3.880e-19
Identity = 43/80 (53.75%), Postives = 58/80 (72.50%), Query Frame = 1
Query:    4 ERIRLQEALRRYSFVKEVKESDANFFLVQVDHAQDIYKRMANDGVVVRFRGNELHCKDCLRVTVGTAEENNRLLELLEKT 243
            E+ R+ EAL+    VK++  SD NF L +V  AQ+IY+ MA  GVV RFRG+ELHCKDC+R+T+G A EN+  L+L +KT
Sbjct:  451 EKTRVVEALQGLPAVKKIHPSDTNFILFEVPRAQEIYRDMAEAGVVARFRGHELHCKDCIRLTIGQAHENDTFLDLFKKT 530          
BLAST of mRNA_Ecto-sp13_S_contig14542.3494.1 vs. uniprot
Match: A0A6C1P946_9BACT (Histidinol-phosphate aminotransferase n=1 Tax=Balneolaceae bacterium TaxID=2053516 RepID=A0A6C1P946_9BACT)

HSP 1 Score: 87.8 bits (216), Expect = 1.280e-18
Identity = 38/81 (46.91%), Postives = 63/81 (77.78%), Query Frame = 1
Query:    4 ERIRLQEALRRYSFVKEVKESDANFFLVQVDHAQDIYKRMANDGVVVRFRGNELHCKDCLRVTVGTAEENNRLLELLEKTV 246
            ER RL E+L + + ++++  SDANF LV++++A D+Y+R+A  G++VR+RG++LHC +CLR+TVGT +ENN L+  L + +
Sbjct:  280 ERTRLAESLAQINGIQKIFPSDANFLLVRMNNALDVYRRLAGMGIIVRYRGDQLHCDNCLRITVGTPDENNTLISALREVL 360          
BLAST of mRNA_Ecto-sp13_S_contig14542.3494.1 vs. uniprot
Match: A0A2D8CKP2_9BACT (Histidinol-phosphate aminotransferase n=3 Tax=Balneolaceae TaxID=1813606 RepID=A0A2D8CKP2_9BACT)

HSP 1 Score: 87.4 bits (215), Expect = 1.660e-18
Identity = 40/79 (50.63%), Postives = 59/79 (74.68%), Query Frame = 1
Query:    4 ERIRLQEALRRYSFVKEVKESDANFFLVQVDHAQDIYKRMANDGVVVRFRGNELHCKDCLRVTVGTAEENNRLLELLEK 240
            ER R+ + L  +  V+ V  +DANF L ++ +A ++YK+MAN GV++R+RGNE HC+DCLR+T+GTA EN+R  E LE+
Sbjct:  271 ERERVIQRLITFEEVEYVHPTDANFVLFKIQNALEVYKKMANQGVIIRYRGNEPHCEDCLRLTIGTAAENDRFFEALEQ 349          
BLAST of mRNA_Ecto-sp13_S_contig14542.3494.1 vs. uniprot
Match: A0A8K1FSQ7_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FSQ7_PYTOL)

HSP 1 Score: 87.8 bits (216), Expect = 1.950e-18
Identity = 42/85 (49.41%), Postives = 64/85 (75.29%), Query Frame = 1
Query:    4 ERIRLQEALRRYSFVKEVKESDANFFLVQVDHAQDIYKRMANDGVVVRFRGNELHCKDCLRVTVGTAEENNRLLELLEKTVAAIS 258
            E+ R+ +ALR+ SFVK +  SD+NF L +V +A  +Y+ MA+ GVV+RFRGN+L   DCLR T+G+ +EN+++LELLE+  A ++
Sbjct:  342 EKERVIKALRQLSFVKAIYASDSNFVLFEVPNALKVYREMADRGVVIRFRGNQLLLNDCLRATIGSRDENDKMLELLERVSAELA 426          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig14542.3494.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KK66_9PHAE3.450e-4896.55Imidazole acetol-phosphate transaminase n=2 Tax=Ec... [more]
A0A836C9P4_9STRA2.170e-2662.35Imidazole acetol-phosphate transaminase n=1 Tax=Tr... [more]
A0A6V1XHV7_HETAK3.230e-2463.41Imidazole acetol-phosphate transaminase n=1 Tax=He... [more]
UPI0009E5AE7C1.910e-2351.16uncharacterized protein LOC110054690 n=1 Tax=Orbic... [more]
A0A0L0FHM3_9EUKA3.280e-2150.00Imidazole acetol-phosphate transaminase n=1 Tax=Sp... [more]
A0A3M6TIJ9_POCDA6.870e-2046.51Imidazole acetol-phosphate transaminase n=2 Tax=Po... [more]
W7TKC7_9STRA3.880e-1953.75Imidazole acetol-phosphate transaminase n=2 Tax=Mo... [more]
A0A6C1P946_9BACT1.280e-1846.91Histidinol-phosphate aminotransferase n=1 Tax=Baln... [more]
A0A2D8CKP2_9BACT1.660e-1850.63Histidinol-phosphate aminotransferase n=3 Tax=Baln... [more]
A0A8K1FSQ7_PYTOL1.950e-1849.41Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig14542contigEcto-sp13_S_contig14542:437..703 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start0
Seed ortholog score167.5
Seed ortholog evalue2.7e-39
Seed eggNOG ortholog2880.D7FPJ8
Preferred nameHIS5
Model size267
KEGG rclassRC00006,RC00888,RC00945
KEGG koko:K00817,ko:K01814
KEGG ReactionR00694,R00734,R03243,R04640
KEGG Pathwayko00340,ko00350,ko00360,ko00400,ko00401,ko00960,ko01100,ko01110,ko01130,ko01230,map00340,map00350,map00360,map00400,map00401,map00960,map01100,map01110,map01130,map01230
KEGG ModuleM00026
Hectar predicted targeting categoryother localisation
GOsGO:0000105,GO:0003674,GO:0003824,GO:0004400,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006082,GO:0006520,GO:0006547,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008483,GO:0008652,GO:0009058,GO:0009507,GO:0009532,GO:0009536,GO:0009570,GO:0009987,GO:0010035,GO:0010038,GO:0010045,GO:0016053,GO:0016740,GO:0016769,GO:0018130,GO:0019438,GO:0019752,GO:0034641,GO:0042221,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464,GO:0046394,GO:0046483,GO:0050896,GO:0052803,GO:0071704,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607
Exons1
EggNOG free text desc.histidinol-phosphate transaminase activity
EggNOG OGsCOG0079@1,KOG0633@2759
EC2.6.1.9,5.3.1.16
Cds size267
COG Functional cat.E
BiGG ReactioniMM904.YIL116W,iND750.YIL116W
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko01007
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462776.444892-CDS-Ecto-sp13_S_contig14542:436..7031681462776.444892-CDS-Ecto-sp13_S_contig14542:436..703Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14542 437..703 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig14542.3494.1prot_Ecto-sp13_S_contig14542.3494.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig14542 437..703 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig14542.3494.1

>prot_Ecto-sp13_S_contig14542.3494.1 ID=prot_Ecto-sp13_S_contig14542.3494.1|Name=mRNA_Ecto-sp13_S_contig14542.3494.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=89bp
QERIRLQEALRRYSFVKEVKESDANFFLVQVDHAQDIYKRMANDGVVVRF
RGNELHCKDCLRVTVGTAEENNRLLELLEKTVAAISAP*
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mRNA from alignment at Ecto-sp13_S_contig14542:437..703+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig14542.3494.1 ID=mRNA_Ecto-sp13_S_contig14542.3494.1|Name=mRNA_Ecto-sp13_S_contig14542.3494.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=267bp|location=Sequence derived from alignment at Ecto-sp13_S_contig14542:437..703+ (Ectocarpus species13 EcNAP12_S_4_19m)
CAGGAGCGAATACGGCTGCAAGAAGCACTGCGGCGCTACAGCTTTGTGAA AGAGGTCAAGGAGTCGGATGCCAACTTTTTCCTCGTCCAGGTGGACCACG CGCAGGACATCTATAAGCGCATGGCCAACGACGGAGTCGTGGTGCGATTC CGCGGCAACGAGCTTCACTGCAAGGATTGTCTGCGGGTGACGGTCGGGAC CGCGGAGGAAAACAACCGCCTCTTGGAACTCCTCGAGAAAACCGTCGCAG CGATCTCAGCTCCGTAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig14542:437..703+

>mRNA_Ecto-sp13_S_contig14542.3494.1 ID=mRNA_Ecto-sp13_S_contig14542.3494.1|Name=mRNA_Ecto-sp13_S_contig14542.3494.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=267bp|location=Sequence derived from alignment at Ecto-sp13_S_contig14542:437..703+ (Ectocarpus species13 EcNAP12_S_4_19m)
CAGGAGCGAATACGGCTGCAAGAAGCACTGCGGCGCTACAGCTTTGTGAA
AGAGGTCAAGGAGTCGGATGCCAACTTTTTCCTCGTCCAGGTGGACCACG
CGCAGGACATCTATAAGCGCATGGCCAACGACGGAGTCGTGGTGCGATTC
CGCGGCAACGAGCTTCACTGCAAGGATTGTCTGCGGGTGACGGTCGGGAC
CGCGGAGGAAAACAACCGCCTCTTGGAACTCCTCGAGAAAACCGTCGCAG
CGATCTCAGCTCCGTAG
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