mRNA_Ecto-sp13_S_contig1453.3483.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig1453.3483.1
Unique NamemRNA_Ecto-sp13_S_contig1453.3483.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig1453.3483.1 vs. uniprot
Match: D7G4S9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4S9_ECTSI)

HSP 1 Score: 244 bits (624), Expect = 1.490e-78
Identity = 136/152 (89.47%), Postives = 141/152 (92.76%), Query Frame = 1 
Query:   82 SSAQNLKEKNRPKPRKTARVDGGDVTKRSDGAAAAGGAGG-RKRPRAPSWERDYQQIWKAVTDLGSEQFTGKEKKAYEARKIVERGGRAPKDPRMPYVMLQGLRKKAKQREERREAMEAEAGVITGNAGSARRKSAQTSRGRGXXXXXSSRG 534
            S+A++ +EKNRPKPRKTARVDGGDVTKRSDGAA A      RKRPRAPSWERDYQQIWKAVTDLGSEQFTGKEKKAYEARKIVERGGRAPKDPRMPYVMLQGLRKKAKQREERREAMEAEAGV+TGNAGSARRKSAQTSRGRG   XXSSRG
Sbjct:   16 SAARDREEKNRPKPRKTARVDGGDVTKRSDGAAGAXXXXXXRKRPRAPSWERDYQQIWKAVTDLGSEQFTGKEKKAYEARKIVERGGRAPKDPRMPYVMLQGLRKKAKQREERREAMEAEAGVVTGNAGSARRKSAQTSRGRGGGSXXSSRG 167
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BLAST of mRNA_Ecto-sp13_S_contig1453.3483.1 vs. uniprot
Match: A0A6H5JA53_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JA53_9PHAE)

HSP 1 Score: 197 bits (502), Expect = 4.120e-61
Identity = 105/116 (90.52%), Postives = 105/116 (90.52%), Query Frame = 1 
Query:    1 MPARARKGHGFSTSAGGVQVVEAPGAYSSAQNLKEKNRPKPRKTARVDGGDVTKRSDGAAAAGGAGG--RKRPRAPSWERDYQQIWKAVTDLGSEQFTGKEKKAYEARKIVERGGR 342
            MPARARKGHGFSTSAGGVQVVEAPGAYSSAQNLKEKNRPKPRK ARVDGGDVTKR DGAA         RKRPRAPSWERDYQQIWKAVTDLGSEQFTGKEKKAYEARKIVERGGR
Sbjct:    1 MPARARKGHGFSTSAGGVQVVEAPGAYSSAQNLKEKNRPKPRKKARVDGGDVTKRYDGAAXXXXXXXXXRKRPRAPSWERDYQQIWKAVTDLGSEQFTGKEKKAYEARKIVERGGR 116
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BLAST of mRNA_Ecto-sp13_S_contig1453.3483.1 vs. uniprot
Match: K8Z355_NANGC (Uncharacterized protein (Fragment) n=4 Tax=Monodopsidaceae TaxID=425072 RepID=K8Z355_NANGC)

HSP 1 Score: 80.1 bits (196), Expect = 1.640e-14
Identity = 63/193 (32.64%), Postives = 91/193 (47.15%), Query Frame = 1 
Query:   52 VQVVEAPGAYSSAQNLKEKNRPKPRKTARVDGGDVTKRSDGAAAAGGAGGRKRPRAPSWERDYQQIWKAVTDLGSEQFTGKEKKAYEARKIVERGGRAPKDPRMPYVMLQGLRKKAKQREERREAMEAEAGVITGNAGSARRKSAQTSRGRGXXXXXSSRGXXXXXXXXXXXFGPAPSMGMMKSGVLHISRNT 630
            VQVV AP   S  +   +  R +  +      G   +   G A + G    +R        +++++WK+V DLG+ Q TG EKKAY+AR+IVE GG+AP   + P+ +L G R KAKQR+ RR+    E+GV+      +    A      G      S G             P P +G MK G L ++R T
Sbjct:   16 VQVVVAPSIPSPYEYKLQLQREQGERQDEAANGSYKRARSGGALSNGNNAAERA-------EFKKMWKSVMDLGAMQLTGYEKKAYDARRIVELGGKAPAAIKTPFNILMGKRAKAKQRDARRDNDIRESGVVVAKKRQSAAALANQILDDGGRRKHDSSGKIGET--------PYPVLGKMKGGTLFLNRGT 193
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BLAST of mRNA_Ecto-sp13_S_contig1453.3483.1 vs. uniprot
Match: A0A835Z9Y9_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z9Y9_9STRA)

HSP 1 Score: 68.6 bits (166), Expect = 1.310e-9
Identity = 36/63 (57.14%), Postives = 46/63 (73.02%), Query Frame = 1 
Query:  259 VTDLGSEQFTGKEKKAYEARKIVERGGRAPKDPRMPYVMLQGLRKKAKQREERREAMEAEAGV 447
            V DLG+ QFTGK+KK +EA KIV  GG+APK  +MPY +L G+R KAK+RE +R   E E+G 
Sbjct:  427 VNDLGTAQFTGKQKKEHEAAKIVALGGQAPKAQKMPYKILMGMRNKAKEREAKRLQAEKESGA 489
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BLAST of mRNA_Ecto-sp13_S_contig1453.3483.1 vs. uniprot
Match: A0A7S2WUC7_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WUC7_9STRA)

HSP 1 Score: 57.0 bits (136), Expect = 9.610e-7
Identity = 35/90 (38.89%), Postives = 53/90 (58.89%), Query Frame = 1 
Query:  181 AAGGAGGRKRPRAPSWERDYQQIWKAVTDLGSEQFTGKEKKAYEARKIVERGGRAPKDPRMPYVMLQGLRKKAKQREERREAMEAEAGVI 450
            + GGAGG ++      E D ++ +++V D G   F G +K+  E  KIVE GG A K+ +MPY ML G+  K K+  + +E  + EAGV+
Sbjct:   11 SGGGAGGGEK------EFDMKEAYRSVLDFGMSGFDGWQKRQIEDSKIVELGGSASKNRKMPYKMLTGILAKRKRVAQTKEKEDREAGVV 94
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BLAST of mRNA_Ecto-sp13_S_contig1453.3483.1 vs. uniprot
Match: A0A225WVL1_9STRA (Uncharacterized protein n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225WVL1_9STRA)

HSP 1 Score: 58.9 bits (141), Expect = 1.720e-6
Identity = 29/75 (38.67%), Postives = 49/75 (65.33%), Query Frame = 1 
Query:  232 RDYQQIWKAVTDLGSEQFTGKEKKAYEARKIVERGGRAPKDPRMPYVMLQGLRKKAKQREERREAMEAEAGVITG 456
            +++   + +V +  +    GKEK+A+EA+KI   GG+A K+P +PY ML G++ K   R++RRE +  E+ V+TG
Sbjct:   49 KEFDDTFDSVLEFATSNLKGKEKRAHEAKKIEALGGKAAKNPSIPYKMLIGMKTKGAARKQRREDLLKESDVVTG 123
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BLAST of mRNA_Ecto-sp13_S_contig1453.3483.1 vs. uniprot
Match: K3W6Y6_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3W6Y6_GLOUD)

HSP 1 Score: 53.1 bits (126), Expect = 4.150e-5
Identity = 28/78 (35.90%), Postives = 49/78 (62.82%), Query Frame = 1 
Query:  229 ERDYQQIWKAVTDLGSEQFTGKEKKAYEARKIVERGGRAPKDPRMPYVMLQGLRKKAKQREERRE--AMEAEAGVITG 456
            ++++ + + +V D  +    GKEKKAYE ++I   GG+A  +   PY +L G++KKA +RE+R +   M  +A V++G
Sbjct:   52 KKEFDETFDSVKDFANASLKGKEKKAYETKRIEALGGKAASNRHTPYHILMGIKKKAVEREKRDKELVMNKQADVVSG 129
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1453.3483.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
D7G4S9_ECTSI1.490e-7889.47Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JA53_9PHAE4.120e-6190.52Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
K8Z355_NANGC1.640e-1432.64Uncharacterized protein (Fragment) n=4 Tax=Monodop... [more]
A0A835Z9Y9_9STRA1.310e-957.14Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S2WUC7_9STRA9.610e-738.89Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A225WVL1_9STRA1.720e-638.67Uncharacterized protein n=1 Tax=Phytophthora megak... [more]
K3W6Y6_GLOUD4.150e-535.90Uncharacterized protein n=1 Tax=Globisporangium ul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig1453contigEcto-sp13_S_contig1453:5070..8617 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score60.8
Seed ortholog evalue1e-06
Seed eggNOG ortholog36331.EPrPI00000013156
Model size759
Hectar predicted targeting categoryother localisation
Exons4
EggNOG OGs1MD99@121069,2CXRE@1,2RZ8G@2759
Ec32 ortholog descriptionProtein of unknown function DUF4602
Ec32 orthologEc-20_000510.1
Cds size759
Best tax levelPythiales
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462775.6081746-CDS-Ecto-sp13_S_contig1453:5069..52621681462775.6081746-CDS-Ecto-sp13_S_contig1453:5069..5262Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1453 5070..5262 -
1681462775.6192024-CDS-Ecto-sp13_S_contig1453:5898..61221681462775.6192024-CDS-Ecto-sp13_S_contig1453:5898..6122Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1453 5899..6122 -
1681462775.6314135-CDS-Ecto-sp13_S_contig1453:6923..71631681462775.6314135-CDS-Ecto-sp13_S_contig1453:6923..7163Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1453 6924..7163 -
1681462775.6409864-CDS-Ecto-sp13_S_contig1453:8515..86171681462775.6409864-CDS-Ecto-sp13_S_contig1453:8515..8617Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1453 8516..8617 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig1453.3483.1prot_Ecto-sp13_S_contig1453.3483.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig1453 5070..8617 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig1453.3483.1

>prot_Ecto-sp13_S_contig1453.3483.1 ID=prot_Ecto-sp13_S_contig1453.3483.1|Name=mRNA_Ecto-sp13_S_contig1453.3483.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=253bp
MPARARKGHGFSTSAGGVQVVEAPGAYSSAQNLKEKNRPKPRKTARVDGG
DVTKRSDGAAAAGGAGGRKRPRAPSWERDYQQIWKAVTDLGSEQFTGKEK
KAYEARKIVERGGRAPKDPRMPYVMLQGLRKKAKQREERREAMEAEAGVI
TGNAGSARRKSAQTSRGRGGGGGGSSRGGGSERGGGSSSFGPAPSMGMMK
SGVLHISRNTAPPGVRKRMSERERMAGGRGGSGGGGGRGKGGSGGARRGS
RG*
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mRNA from alignment at Ecto-sp13_S_contig1453:5070..8617-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig1453.3483.1 ID=mRNA_Ecto-sp13_S_contig1453.3483.1|Name=mRNA_Ecto-sp13_S_contig1453.3483.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3548bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1453:5070..8617- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCCGGCAAGAGCAAGGAAAGGACATGGATTTTCAACGTCTGCTGGCGG
TGTCCAAGTCGTTGAGGCCCCCGGCGCGTATTCCTCAGCGCAAAACTTGA
AAGTGAGAGAGATAGTTTGACGCCGTGCACGGTCCACCATTCACAACAGG
GCGAGAGAGACAAACAGACAGACACAATAGACAGACAGACAGACAGACAG
ACAGATCGAGAGAGAGAGAAAGAGAGAGAGAGAGAGACCGCTAGCCACTA
GGAGTTCTTCAGCAGAAAACCGGCATGCGGCTGTTGTAGATGCCTTCAGC
CATTCTCGCACACAGCAGGATCTATCCCTTTCACCACGGTCAGTCTCCTT
TCCTGTCTCCCGTCTCTGTGCTTCGTCTCCCACTGCCTGCGAACAGCCTC
TCGCGTACGCTCTGCTCATGAACGAAATGCTGCTGCCCTTTCACATCAGC
TCATGTTGAACGGTGCAGCATCAGTCGATTTGAAAGGACAGCAGGATTTG
GGTGATAAGCAGGGCGTATTCGACGGACTGTCACTGTCTCTGCCGGGGGG
AACACAAAGCCAGGAGCCACTGCTTGGCTGCAGGCAAGACATCAAGACAC
CCTGTTGTGCGAGAATGTCTCCAGGCTCGAGGCACCTGCGCCCGTATGCG
GGTGAATCCCTCCTGTCACCAGTACTTTTACCCTCGTCACACATGAACTG
AGCGCCTGGGACCACCGACCCCAATCGCATGGAGCTGCTACAGCAGTACA
GCAGTGTAGTGAACGCTGAAGAACATGTTTGTAGCGTCTTCATTACTGCC
TTTCTGGGGTGTACCATTAGACTAGGGGTTGCTCGAGAGTGTTGGTTACA
TGACCTTCCCGGGTCTGCCGACGCAATCTCGGCATCCACAGACGGGGGTA
CTCGGTGTTACAGTACCAGCGATTATCATCGCTCCCCGGTATCCCGCAGC
AGAAGAAAGGAAACGGTCGACCGAAAGTAGTGCTTGCCTCGTCTCACACT
GCCATGCATGCGGCCCAGAAGATGCCCTGTGTCGGTACTTGTAGGTAGAG
AGAGAGGTTGTGTTATCTACCGGGGCGAAGAAAATAAAACGAACAGTTTT
TGTCGCCGAACTTAGCTGCCCCCATCCCCAACGTGGCAGTGAGGGCACTG
CGCATAACGGGTCATTGAGAAGAACAGAGGTGTGTGCACGCCGACGGATT
TCTGCTCCTCTTCCGCGCTGAGATCGCACGCATGATCGACATCACACGAT
GGGCCAGCAGTATTCTAACAGGGCGTGCCGAAGAATCGAACCTGGATATC
GAGAAATCGGAAACTATTTATTATTCCCTGGGCGCGAACATGAGCAACAC
AATTTACGTGCCGCAACAAACGGAAAACTTCCGCCGCTTTCGCCGCCTAG
ATCAACTTCTTGTCCGTATTCTTGCACATACCGCCCACCGCCCGCCCTGC
GCAGGAAAAGAACCGTCCCAAGCCAAGGAAAACGGCCCGTGTTGACGGTG
GCGACGTCACCAAGCGCTCGGATGGAGCGGCAGCAGCAGGAGGAGCAGGA
GGACGAAAGCGCCCTCGGGCGCCTTCTTGGGAGCGCGACTACCAGCAGAT
CTGGAAGGCGGTGACGGACCTCGGTTCAGAACAGTTCACGGGGAAGGAGA
AGAAGGCCTACGAAGCGCGCAAGATCGTCGAGAGGGGTGGCAGGGTGGGT
AGTGGTGGTGGGCTGTTGAAAGTGTCGTGCTGATTTGGCCGTGCTGTGTT
TTGGTAGAATACCGGCTCCCTCCTCCGTGTGCCACAGAGGAGTAACAGCA
GTTTGTTTGTGTTAATGCTGTTGCTGCTGCTGCTGGCTCTACTGTTCCTG
CCACTTGTGTGGCTGGGTACTATTTCTCGTGCGTGATGAGTTACGAATCA
AAGTCGATTCCCTCTTCATCTCGTTGTTCTGTGGGTTGAGATGTGGGGTA
TTGCGAAGTTATCATGTTGGAGAACGGCGCAGCATGCTGCTCGTCATGGA
TAACAGTACGCCAGATCATACCATACATGCAGCGCGCGCTTTTTGACAGA
CGCATCACATACCAACCCGCTTGCTATTGGCAACATGAAGCACTGAGTGC
CGTCTAAGTGCGGCTTTACAAGTCGGCGACCAAGACGAGATCGGCCATCT
GTTCTCTTGATACGCAAGCATGCCTTCGAATTCCCATCCCCATTCCATCT
TGGCATGGCATACCCTACCATGCTTGGCTCTGTTCCCATGGTTGTGATTC
CCGCACATGGTACCGCTGTACCCGTTCCCCGAGAACCGTGTCTACCTGCC
AGTCTTGTCCAGCCCGCTCGTGCTCCGTCGAGCTCCAATATGTTCCTCTT
TGTCCTCCCTCCGGTAGAGCTGGTGAGACCAAATCACCGGACTACATTCA
CTCCATGACCTTGGCTGAACCGAAACGCACAACTTTCTGCCCGCTTTCTC
GCATCACACCACGTGTGTGACGAACCACGCGAACGTAATCTGCAGGCTCC
GAAAGACCCCAGGATGCCGTACGTGATGCTCCAGGGGCTCCGCAAGAAGG
CCAAGCAGCGCGAGGAACGCCGGGAAGCCATGGAGGCTGAGGCTGGTGTT
ATCACTGGCAACGCTGGGTCGGCCAGGAGGAAGTCGGCCCAAACGTCTCG
TGGCCGCGGCGGCGGCGGTGGTGGAAGCAGCAGGGGCGGCGGAAGCGAAC
GAGGAGGTGGTAGCTCGAGGTGGGTGCCGGGTGTTTCGTGTGTCACGCGA
GAGGCCTTCGTTGCCCGTCAAGCAGTCCAGTGAGGAGACTTGGGGGTCGA
ACGAGATCGAAGGATGCTGGTGATGGCCTCTAATTTTTTTGTGCAGAATG
CAAGCATTTACATCAAATGTTAGTGGCGATCCCCCGGGCGGCCCGTGGTG
TTGTAACCTGTGATACTTACGTATGACGTATGATATGACCCCCCTCTCCT
TTTGAACACGGCCGTGAATACCACCACCACCGCGAACCTGCAGGGCGAAT
TACTTGACACGGTACGCTGTGCTATGGGTAGAACAACGCGAAAAAAAATT
CCAACGCAGCTCCTCACCCGCGGGCGGTCCCTCTACTCTCGTCTCTTCCT
TTCCACGTTTTTGGCTCAGGAAAAATCTCAACCTCGTTCTTCTTCATCTT
CCCCGTAGACTGCCGGTTTCCTTGATCTAACGTAGTCGTCGTCTCCACTC
TGTATGCTTCTTCCCCTAAGCAAACATGCTCGTTTTCCCGTTTTGTTGTG
TGCGTGGTGCGTGTGGTAGTCTTTGTGATCAACTCAGTTCCATCCACCCC
AGTACGCTTTGCCTGAGACTAAACACGCCTTCCCCTTCCTTTGTTGTGTG
TGTAGCTTCGGGCCGGCTCCTTCGATGGGCATGATGAAGTCCGGCGTGCT
GCACATCAGTCGAAACACGGCACCCCCCGGGGTCCGAAAGCGCATGTCTG
AACGCGAACGAATGGCGGGAGGGCGTGGCGGCAGCGGTGGGGGAGGGGGG
AGAGGAAAGGGAGGGTCGGGCGGGGCGAGAAGAGGGAGCAGGGGCTAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1453:5070..8617-

>mRNA_Ecto-sp13_S_contig1453.3483.1 ID=mRNA_Ecto-sp13_S_contig1453.3483.1|Name=mRNA_Ecto-sp13_S_contig1453.3483.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=759bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1453:5070..8617- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCCGGCAAGAGCAAGGAAAGGACATGGATTTTCAACGTCTGCTGGCGG
TGTCCAAGTCGTTGAGGCCCCCGGCGCGTATTCCTCAGCGCAAAACTTGA
AAGAAAAGAACCGTCCCAAGCCAAGGAAAACGGCCCGTGTTGACGGTGGC
GACGTCACCAAGCGCTCGGATGGAGCGGCAGCAGCAGGAGGAGCAGGAGG
ACGAAAGCGCCCTCGGGCGCCTTCTTGGGAGCGCGACTACCAGCAGATCT
GGAAGGCGGTGACGGACCTCGGTTCAGAACAGTTCACGGGGAAGGAGAAG
AAGGCCTACGAAGCGCGCAAGATCGTCGAGAGGGGTGGCAGGGCTCCGAA
AGACCCCAGGATGCCGTACGTGATGCTCCAGGGGCTCCGCAAGAAGGCCA
AGCAGCGCGAGGAACGCCGGGAAGCCATGGAGGCTGAGGCTGGTGTTATC
ACTGGCAACGCTGGGTCGGCCAGGAGGAAGTCGGCCCAAACGTCTCGTGG
CCGCGGCGGCGGCGGTGGTGGAAGCAGCAGGGGCGGCGGAAGCGAACGAG
GAGGTGGTAGCTCGAGCTTCGGGCCGGCTCCTTCGATGGGCATGATGAAG
TCCGGCGTGCTGCACATCAGTCGAAACACGGCACCCCCCGGGGTCCGAAA
GCGCATGTCTGAACGCGAACGAATGGCGGGAGGGCGTGGCGGCAGCGGTG
GGGGAGGGGGGAGAGGAAAGGGAGGGTCGGGCGGGGCGAGAAGAGGGAGC
AGGGGCTAG
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