mRNA_Ecto-sp13_S_contig14514.3470.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig14514.3470.1
Unique NamemRNA_Ecto-sp13_S_contig14514.3470.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig14514.3470.1 vs. uniprot
Match: A0A6H5KYA6_9PHAE (TPT domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KYA6_9PHAE)

HSP 1 Score: 427 bits (1098), Expect = 7.730e-148
Identity = 237/240 (98.75%), Postives = 238/240 (99.17%), Query Frame = 1
Query:    1 MRLSYTLAVGALAVAAKQTCAFHVSAPAITATTKTTFTSSTSAISGRHAATAVAPARNVLQASLNVPGSGWVRGRAERVKSALVLNSGDATASAAGAAPAKEKTSTLKVGFYLFVWYSLTIGYNIYNKATLNRMNIPWILSTVQLAVGAVYVSLIWALGVRKAPKLSGDNLKAVLPLAALHTTSHIAAVVGLSAGAIGFVQIVKAGEPLFTALFSALFLGQIFALPVYAALLPVVGGVAI 720
            MRLSYTLAV ALAVAAKQTCAFHVSAPAI ATTKTTFTSSTSAISGRHAATAVAPARNVLQASLNVPGSGWVRGRAERVKSALVLNSGDATASAAGAAPAKEKTSTLKVGFYLFVWYSLTIGYNIYNKATLNRMNIPWILSTVQLAVGAVYVSLIWALGVRKAPKLSG+NLKAVLPLAALHTTSHIAAVVGLSAGAIGFVQIVKAGEPLFTALFSALFLGQIFALPVYAALLPVVGGVAI
Sbjct:    1 MRLSYTLAVSALAVAAKQTCAFHVSAPAIAATTKTTFTSSTSAISGRHAATAVAPARNVLQASLNVPGSGWVRGRAERVKSALVLNSGDATASAAGAAPAKEKTSTLKVGFYLFVWYSLTIGYNIYNKATLNRMNIPWILSTVQLAVGAVYVSLIWALGVRKAPKLSGENLKAVLPLAALHTTSHIAAVVGLSAGAIGFVQIVKAGEPLFTALFSALFLGQIFALPVYAALLPVVGGVAI 240          
BLAST of mRNA_Ecto-sp13_S_contig14514.3470.1 vs. uniprot
Match: A0A835ZDI5_9STRA (Triose-phosphate transporter family-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZDI5_9STRA)

HSP 1 Score: 176 bits (445), Expect = 8.880e-50
Identity = 95/150 (63.33%), Postives = 116/150 (77.33%), Query Frame = 1
Query:  283 AGAAPAKE----KTSTLKVGFYLFVWYSLTIGYNIYNKATLNRMNIPWILSTVQLAVGAVYVSLIWALGVRKAPKLSGDNLKAVLPLAALHTTSHIAAVVGLSAGAIGFVQIVKAGEPLFTALFSALFLGQIFALPVYAALLPVVGGVAI 720
            A AAPA +    K   LKV  Y  +WY L IGYNI NKATLNR+ +PW++S+VQL +G++Y++L+W L +RKAPKLS  NLK V PLAALHTTSHI+AV+GL AGA+GFV +VKA EPLFTA  SAL L +   LPVYA+LLPVVGGVA+
Sbjct:    3 AAAAPATDGPAQKAKRLKVLGYFVLWYLLNIGYNISNKATLNRVALPWLVSSVQLVIGSMYIALVWGLKLRKAPKLSKANLKTVFPLAALHTTSHISAVIGLGAGAVGFVHVVKALEPLFTAALSALLLQKFMPLPVYASLLPVVGGVAL 152          
BLAST of mRNA_Ecto-sp13_S_contig14514.3470.1 vs. uniprot
Match: A0A6U4KWF3_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A6U4KWF3_9STRA)

HSP 1 Score: 159 bits (401), Expect = 5.520e-43
Identity = 80/134 (59.70%), Postives = 101/134 (75.37%), Query Frame = 1
Query:  319 LKVGFYLFVWYSLTIGYNIYNKATLNRMNIPWILSTVQLAVGAVYVSLIWALGVRKAPKLSGDNLKAVLPLAALHTTSHIAAVVGLSAGAIGFVQIVKAGEPLFTALFSALFLGQIFALPVYAALLPVVGGVAI 720
            LKVG Y  +WY L IGYNIYNK  LN   +PW ++ +QLA G +    +WA G+RKAPKLS  N+K +LPLA++HT +H  AV+ L AGA+ F  IVKA EP F+ALF+ALFLGQ+FA PVYAAL+PV+GGVA+
Sbjct:   88 LKVGGYFALWYILNIGYNIYNKKVLNAFPLPWTMALMQLAAGLLVFVPLWATGLRKAPKLSIPNVKTLLPLASMHTAAHATAVLSLGAGAVSFTHIVKAAEPAFSALFAALFLGQVFAAPVYAALVPVIGGVAV 221          
BLAST of mRNA_Ecto-sp13_S_contig14514.3470.1 vs. uniprot
Match: A0A4D9DFS8_9STRA (TPT domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9DFS8_9STRA)

HSP 1 Score: 159 bits (401), Expect = 6.790e-43
Identity = 85/158 (53.80%), Postives = 113/158 (71.52%), Query Frame = 1
Query:  247 LVLNSGDATASAAGAAPAKEKTSTLKVGFYLFVWYSLTIGYNIYNKATLNRMNIPWILSTVQLAVGAVYVSLIWALGVRKAPKLSGDNLKAVLPLAALHTTSHIAAVVGLSAGAIGFVQIVKAGEPLFTALFSALFLGQIFALPVYAALLPVVGGVAI 720
            LV   G A A+A G+    ++T  LKVG + F+WY   IGYNIYNK  LN + +PW++  VQL++G +YV  +W  G+RKAPKLS  N+K +LP+AA+H  +HI AV+ L AGA+ F  I+KA EP FT+LFSALFL Q F+  VYA+L+PV+GGVAI
Sbjct:   81 LVSRRGGAVATATGSDAGVKQT--LKVGSFFFLWYLFNIGYNIYNKKALNVLPLPWMVGLVQLSLGLLYVFPLWLFGIRKAPKLSLQNVKNILPVAAMHAMAHITAVISLGAGAVSFTHIIKAAEPAFTSLFSALFLKQYFSPVVYASLIPVMGGVAI 236          
BLAST of mRNA_Ecto-sp13_S_contig14514.3470.1 vs. uniprot
Match: A0A6H5KC08_9PHAE (TPT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KC08_9PHAE)

HSP 1 Score: 157 bits (396), Expect = 3.070e-42
Identity = 81/144 (56.25%), Postives = 106/144 (73.61%), Query Frame = 1
Query:  289 AAPAKEKTSTLKVGFYLFVWYSLTIGYNIYNKATLNRMNIPWILSTVQLAVGAVYVSLIWALGVRKAPKLSGDNLKAVLPLAALHTTSHIAAVVGLSAGAIGFVQIVKAGEPLFTALFSALFLGQIFALPVYAALLPVVGGVAI 720
            A PA +K+ T+ VG Y F+WY+L IGYNI NK  LN + +PW +S +QL VG+++V  +W L +R AP L+  N+K + P+AA H  SH+ AV+GL AGA+ FV IVKA EPLFTALFSA+FLGQIF+  VY  L+PVV GVA+
Sbjct:   75 APPAPKKSQTIIVGIYFFLWYALNIGYNITNKKALNAIALPWSISVLQLVVGSIFVLPLWMLKLRDAPGLTMANVKGLSPIAACHMLSHVCAVIGLGAGAVSFVHIVKAAEPLFTALFSAIFLGQIFSPLVYLTLVPVVAGVAL 218          
BLAST of mRNA_Ecto-sp13_S_contig14514.3470.1 vs. uniprot
Match: D7FK20_ECTSI (Glucose-6-phosphate/phosphate translocator n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FK20_ECTSI)

HSP 1 Score: 154 bits (389), Expect = 3.350e-41
Identity = 80/144 (55.56%), Postives = 104/144 (72.22%), Query Frame = 1
Query:  289 AAPAKEKTSTLKVGFYLFVWYSLTIGYNIYNKATLNRMNIPWILSTVQLAVGAVYVSLIWALGVRKAPKLSGDNLKAVLPLAALHTTSHIAAVVGLSAGAIGFVQIVKAGEPLFTALFSALFLGQIFALPVYAALLPVVGGVAI 720
            A PA +K  T+ VG Y F+WY+L IGYNI NK  LN + +PW +S +QL VG+++V  +W L +R AP L+  N+K + P+A  H  SH+ AV+GL AGA+ FV IVKA EPLFTALFSA+FLGQIF+  VY  L+PVV GVA+
Sbjct:   75 APPAPKKNQTVIVGIYFFLWYALNIGYNITNKKALNAIALPWSISVLQLVVGSIFVLPLWMLKLRDAPGLTMANVKGLSPIATCHMLSHVCAVIGLGAGAVSFVHIVKAAEPLFTALFSAVFLGQIFSPLVYLTLVPVVAGVAL 218          
BLAST of mRNA_Ecto-sp13_S_contig14514.3470.1 vs. uniprot
Match: A0A836CHH7_9STRA (Plastidic triose-phosphate/phosphate translocator n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CHH7_9STRA)

HSP 1 Score: 152 bits (385), Expect = 1.060e-40
Identity = 85/179 (47.49%), Postives = 115/179 (64.25%), Query Frame = 1
Query:  199 PGSGWVRGRAERVKSALVLNSGDATASAAGAAPAKEKTST-----LKVGFYLFVWYSLTIGYNIYNKATLNRMNIPWILSTVQLAVGAVYVSLIWALGVRKAPKLSGDNLKAVLPLAALHTTSHIAAVVGLSAGAIGFVQIVKAGEPLFTALFSALFLGQIFALPVYAALLPVVGGVAI 720
            P +G     AE V+       G A+ +    +P  ++T +     L++G Y F+WYSL +GYN +NK TLN +  P  LS +QL VG VYVSL+W L +R AP LS DN+K + P+   H  SH++AV+GL AG++ F  IVKA EP FTALFSA+FL Q F +PVY +L+PVV GVA+
Sbjct:   44 PAAGGALAVAEEVRG------GTASVAKTAKSPVMKRTESNLKYNLRIGMYFFLWYSLNVGYNYHNKKTLNMLAAPLTLSALQLVVGVVYVSLLWLLRLRAAPGLSMDNIKTLSPIGLCHAISHLSAVIGLGAGSVSFTHIVKAAEPFFTALFSAIFLKQYFPVPVYLSLVPVVAGVAL 216          
BLAST of mRNA_Ecto-sp13_S_contig14514.3470.1 vs. uniprot
Match: A0A7S1ZAP7_9STRA (Hypothetical protein (Fragment) n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S1ZAP7_9STRA)

HSP 1 Score: 145 bits (365), Expect = 1.580e-39
Identity = 80/161 (49.69%), Postives = 104/161 (64.60%), Query Frame = 1
Query:  250 VLNSGDATASAAGAAPAKEKTS----TLKVGFYLFVWYSLTIGYNIYNKATLNRMNIPWILSTVQLAVGAVYVSLIWALGVRKAPKLSGDNLKAVLPLAALHTTSHIAAVVGLSAGAIGFVQIVKAGEPLFTALFSALFLGQIFALPVYAALLPVVGGVAI 720
            V +S     SAAG    +E  S    TLKVG Y  +WY   IGYNIYNK  LN +  PW ++ +Q+A G +Y   +W LG+RKAPKLS D++K ++P+A  HT  H+ AVV L AGA+ F  IVKA EP+ T L + L LGQ+ +  VYA LLP++GGVAI
Sbjct:   51 VKSSTSVALSAAGGEAVEEADSGLGETLKVGTYFALWYLFNIGYNIYNKQALNVLAFPWTIALIQMATGILYFGPLWLLGLRKAPKLSFDDMKTLVPIALCHTGVHVGAVVALGAGAVSFAHIVKASEPVVTCLANFLLLGQVLSPMVYATLLPIIGGVAI 211          
BLAST of mRNA_Ecto-sp13_S_contig14514.3470.1 vs. uniprot
Match: A0A6V1SC99_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1SC99_HETAK)

HSP 1 Score: 149 bits (377), Expect = 2.010e-39
Identity = 80/145 (55.17%), Postives = 101/145 (69.66%), Query Frame = 1
Query:  286 GAAPAKEKTSTLKVGFYLFVWYSLTIGYNIYNKATLNRMNIPWILSTVQLAVGAVYVSLIWALGVRKAPKLSGDNLKAVLPLAALHTTSHIAAVVGLSAGAIGFVQIVKAGEPLFTALFSALFLGQIFALPVYAALLPVVGGVAI 720
            GA    E    +KVG YL +WY ++IGYN+  K   N M +PW L +VQL +G+++VS +WALG+RK PKL   +LKA+ P AAL+T S + A +GL AG + FV IVK+ EPLFTALF AL LGQ  A  VYAALLPVV GVA+
Sbjct:   79 GAEGKMETKQKIKVGIYLALWYVISIGYNLDTKKIFNVMPLPWTLMSVQLLIGSIWVSSMWALGIRKVPKLDAADLKALAPTAALNTLSLLTAAIGLGAGTVSFVHIVKSAEPLFTALFGALLLGQFMAPAVYAALLPVVAGVAL 223          
BLAST of mRNA_Ecto-sp13_S_contig14514.3470.1 vs. uniprot
Match: K0SIX1_THAOC (TPT domain-containing protein n=2 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0SIX1_THAOC)

HSP 1 Score: 149 bits (375), Expect = 2.810e-39
Identity = 81/161 (50.31%), Postives = 106/161 (65.84%), Query Frame = 1
Query:  244 ALVLNS--GDATASAAGAAPAKEKTSTLKVGFYLFVWYSLTIGYNIYNKATLNRMNIPWILSTVQLAVGAVYVSLIWALGVRKAPKLSGDNLKAVLPLAALHTTSHIAAVVGLSAGAIGFVQIVKAGEPLFTALFSALFLGQIFALPVYAALLPVVGGVAI 720
            AL L+S  GDA A  +  +   E   TLKVG Y  +WY   IGYNIYNK  LN ++ PW ++T+Q+A G +Y   +W LG+RKAPKLSGD+LK + P+A  HT  H+ AV+ L AGA+ F  IVKA EP+ T   +AL +G+     VYA LLP++GGVAI
Sbjct:   55 ALALSSTGGDAVAEESAGSGLAE---TLKVGSYFALWYLFNIGYNIYNKQALNALDFPWTIATIQMATGILYFVPLWLLGLRKAPKLSGDDLKTLFPIALCHTGVHVGAVIALGAGAVSFAHIVKASEPVVTCATNALLMGETLPAKVYATLLPIIGGVAI 212          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig14514.3470.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KYA6_9PHAE7.730e-14898.75TPT domain-containing protein n=2 Tax=Ectocarpus T... [more]
A0A835ZDI5_9STRA8.880e-5063.33Triose-phosphate transporter family-domain-contain... [more]
A0A6U4KWF3_9STRA5.520e-4359.70Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
A0A4D9DFS8_9STRA6.790e-4353.80TPT domain-containing protein n=2 Tax=Monodopsidac... [more]
A0A6H5KC08_9PHAE3.070e-4256.25TPT domain-containing protein n=1 Tax=Ectocarpus s... [more]
D7FK20_ECTSI3.350e-4155.56Glucose-6-phosphate/phosphate translocator n=1 Tax... [more]
A0A836CHH7_9STRA1.060e-4047.49Plastidic triose-phosphate/phosphate translocator ... [more]
A0A7S1ZAP7_9STRA1.580e-3949.69Hypothetical protein (Fragment) n=1 Tax=Ditylum br... [more]
A0A6V1SC99_HETAK2.010e-3955.17Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
K0SIX1_THAOC2.810e-3950.31TPT domain-containing protein n=2 Tax=Thalassiosir... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig14514contigEcto-sp13_S_contig14514:1402..4400 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score381.7
Seed ortholog evalue2.5e-103
Seed eggNOG ortholog2880.D8LJY5
Preferred nameSLC35E3
Model size720
KEGG koko:K06643,ko:K15285
KEGG Pathwayko01522,ko01524,ko04068,ko04110,ko04115,ko04120,ko04144,ko04151,ko04218,ko04919,ko05165,ko05169,ko05200,ko05202,ko05203,ko05205,ko05206,ko05214,ko05215,ko05218,ko05219,ko05220,map01522,map01524,map04068,map04110,map04115,map04120,map04144,map04151,map04218,map04919,map05165,map05169,map05200,map05202,map05203,map05205,map05206,map05214,map05215,map05218,map05219,map05220
Hectar predicted targeting categorychloroplast
Exons2
EggNOG free text desc.carbohydrate transport
EggNOG OGsKOG1441@1,KOG1441@2759
Ec32 ortholog descriptiontriose or hexose phosphate / phosphate translocator
Ec32 orthologEc-06_007460.1
EC2.3.2.27
Cds size720
COG Functional cat.Z
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko02000,ko04121,ko04131
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462774.8090725-CDS-Ecto-sp13_S_contig14514:1401..20131681462774.8090725-CDS-Ecto-sp13_S_contig14514:1401..2013Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14514 1402..2013 +
1681462774.8225763-CDS-Ecto-sp13_S_contig14514:4292..44001681462774.8225763-CDS-Ecto-sp13_S_contig14514:4292..4400Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14514 4293..4400 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig14514.3470.1prot_Ecto-sp13_S_contig14514.3470.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig14514 1402..4400 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig14514.3470.1

>prot_Ecto-sp13_S_contig14514.3470.1 ID=prot_Ecto-sp13_S_contig14514.3470.1|Name=mRNA_Ecto-sp13_S_contig14514.3470.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=240bp
MRLSYTLAVGALAVAAKQTCAFHVSAPAITATTKTTFTSSTSAISGRHAA
TAVAPARNVLQASLNVPGSGWVRGRAERVKSALVLNSGDATASAAGAAPA
KEKTSTLKVGFYLFVWYSLTIGYNIYNKATLNRMNIPWILSTVQLAVGAV
YVSLIWALGVRKAPKLSGDNLKAVLPLAALHTTSHIAAVVGLSAGAIGFV
QIVKAGEPLFTALFSALFLGQIFALPVYAALLPVVGGVAI
back to top

mRNA from alignment at Ecto-sp13_S_contig14514:1402..4400+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig14514.3470.1 ID=mRNA_Ecto-sp13_S_contig14514.3470.1|Name=mRNA_Ecto-sp13_S_contig14514.3470.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2999bp|location=Sequence derived from alignment at Ecto-sp13_S_contig14514:1402..4400+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCGCCTGTCATACACGCTCGCCGTGGGCGCCCTGGCCGTCGCCGCGAA GCAAACATGCGCGTTCCACGTGAGCGCGCCGGCGATCACGGCGACAACTA AGACCACCTTCACCTCGTCCACGTCCGCCATCAGCGGGAGGCACGCGGCC ACCGCGGTCGCGCCGGCGCGGAACGTCCTGCAGGCTTCGCTTAACGTGCC CGGGTCCGGGTGGGTCCGCGGCCGCGCGGAGCGCGTAAAGTCCGCGCTGG TGCTCAACTCTGGCGACGCGACCGCGTCGGCCGCAGGAGCCGCTCCCGCT AAGGAGAAGACGAGCACGCTCAAGGTGGGCTTCTACCTGTTCGTGTGGTA CAGCCTCACGATCGGGTACAACATCTACAACAAGGCGACCCTTAACCGGA TGAACATCCCGTGGATTCTGAGCACCGTCCAGCTGGCGGTGGGCGCGGTC TACGTGAGCTTGATCTGGGCGCTCGGCGTGCGAAAGGCGCCCAAGCTGTC GGGCGACAACCTCAAGGCGGTGCTGCCCTTGGCGGCCCTCCACACCACCT CCCACATCGCGGCGGTGGTCGGTCTCTCCGCCGGCGCGATCGGCTTCGTA CAGATCGTGAAGGTATGTGAGAGTGCCGGCGGCTGTTGTTGCACCTCACT CGGTGGTTGTATGCACAGAGCACGACAGCAGTAGTATGGTACAGCAACAT TGCAAGGGGTAGGCAGCTGCTGTTTTTCCATAATTCGCGCTCTTTTTTGT CTGCTCTTTCTCTCTTGTTCTTCGTTCAACATAAAATCCAACTTCTTCGG ATGTGTCTGCGAATCGAAAATGGATCGTTTTTATTGGCTGCCCGAAATCA AAAGCGTTGGTTCGTTGTTCATGTTTTTTGCGCTTGGCGCGTGTTGTCGC ACCGATACTCCATCCTTATGGTACGTGTACAGCGCCCCAAGTACGAGTGG AACGAAATCGAGCTCGTTGGGGGGGGGGGGGGGGGGGGGGGGGGCGTTGA CATCCTTCGAAGGAAACGATGATGTACCAAACCGAACTTGTGGCGACGAT ACCACACCTTCAAGGAGTCGCCCGTTCCGATAAGAATGGTTTCCACCTGC GGCAGCGTACATACGTCAGTCACCTACCCTACCCGAAGATACACGACCGG TTGGTGCTTCAAACAAGCCAGATTCCCCCGCGTATTGCTGGCCTAGTTCA GTACTTTTCTCTGTGGATTTGTTGCGTGCGAAGCACCATTGCGCAGCGCA AGATCAAAGTTTTGAAGCACTGTTGCCCAGCGCAAGATCAAAGTTGTAGT TCGGTCCATTTTCGAGCTTGGTTTGAGCAACTGATCTTTGAGATACACGG GAGCGACAAGTATGAAAAGTGTGGTTACCTGGTACAGGATAAAACCTGGG GGACCATAATTTTGACTGCCTACGGGTTATCGCTGGTTGAAGGGCGCCGA GTATAATCAATATCTATCCTCGTCTAGCCCTCGCTCAGGTAGCCAGCAAC GCAGAGCTATGTACTTGAAACGCTACTTTCCAACAAGCAGTGCATGAATC CTCTGTTTCAGAAAAATTAATGATCGGGTAATCGTTCGCGCGGCTCCCGC CGATGGTAATAGCCTGTCCGCCCCCTTCACACCTTCAGTTGTACACGACA CTGCTGTCTGCTGGTGTTGCTGCTGGTTATTAAGTACTCAAGTATTCGCT CTTCAGGCACTCGTCCAGTAGACGCCATTCCGTCTTTGCCTTGAAATATC TCAGTGGCATCCTTTTGCATTGCTGTGTAAAGCTAAGAACTTACGATTCC TGCCTCTACGTGCTGGCCTTTTGACGCTGTGAAATATAGAGGGTAGCGAA GGTTTGGATATCTGAAACACAATCAATTATGTCGAGTTTTTTTCATGTTC CCTCTATTTTATGTATACCCATCCTGGAATCTAAAGCAATTGTCGGGACA AGGTATCTGGTGTTGTCTTGGCACAGCCAGAAAATGCTTTGAAAACAATG ACACGAGGTGGTTCATCGAGATTCTGGGTGGATTTTCCTTGGAAGCTCGC ATGTACTACAGTATAAACAGTACACGACGGAGGTCCTCTCAACGGCAGTA CGGTGCCTCCTTGCAACTTGCACACACACTGCCTCTGTTGGTCCCGATTG CTTGCGGTGGGTGTCACGCCTCCGCGTTCACGAGCTGAGCTCAACACCTA CTTGTGTTGTTCTGTGTCCCCCTTGTGTGTCCTTTCGCTGCTGGTGCTGG CGCTGGCGCTGGCGAACTGTTCAGTTTCTCCCAGTAGGAAGTATGCATCA AACACACAAGAGTTTCTGCCTGTTCTAGATATACCACATCCATTCGAAGG GGATGTTACCAATTTTCATTTTTCGTGAGTTGAGAGAAACCGGGTGGAAA CTAGGCTTATTTTGAGCTTGTTTAGGCCTACACACTGAATTGCGTCCGTG ATACCAGCTGGTGATAAGTACTGGTACAAAGTACCTGCATCGTCAAGATA AAGCCTGGTAATGATGTATCATACACATGCTCCAAGTGTGGCTTATGCGA CCTAATAGTGTACATCGTCGGCCAGAAGTAGGATGGCCTGGCCTGCATCC AGGCAACCCACAGACGTCTCCGTTGATTTCTGTGCAGCAGAGTATGCACA GCAATGAGCGTATTACGTATTAGGGCGACAAATAACGTACGTCGCGGCTC TAGCTTTGTCGACGGTTTCGATTGGTGGAAGAAGCTGATTGATACTGATC ACGCCGAGTTGTTTCCCTCTCTTGTTTCCCTCTCTTTTTTCATGCGCGGT CACTGATATTGTCCCGTCCGTGTGGCTCTACCGCCGGGCGTGTGTGTCTT GTCTGTTGTCTTGTGTACCTCTTTTTTTTTCTCGGTCCCAGGCGGGAGAG CCGCTCTTCACGGCGCTCTTCAGCGCTCTGTTCCTGGGCCAGATTTTCGC CCTGCCCGTGTACGCCGCGCTTCTCCCCGTGGTCGGCGGTGTCGCCATC
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig14514:1402..4400+

>mRNA_Ecto-sp13_S_contig14514.3470.1 ID=mRNA_Ecto-sp13_S_contig14514.3470.1|Name=mRNA_Ecto-sp13_S_contig14514.3470.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=720bp|location=Sequence derived from alignment at Ecto-sp13_S_contig14514:1402..4400+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCGCCTGTCATACACGCTCGCCGTGGGCGCCCTGGCCGTCGCCGCGAA
GCAAACATGCGCGTTCCACGTGAGCGCGCCGGCGATCACGGCGACAACTA
AGACCACCTTCACCTCGTCCACGTCCGCCATCAGCGGGAGGCACGCGGCC
ACCGCGGTCGCGCCGGCGCGGAACGTCCTGCAGGCTTCGCTTAACGTGCC
CGGGTCCGGGTGGGTCCGCGGCCGCGCGGAGCGCGTAAAGTCCGCGCTGG
TGCTCAACTCTGGCGACGCGACCGCGTCGGCCGCAGGAGCCGCTCCCGCT
AAGGAGAAGACGAGCACGCTCAAGGTGGGCTTCTACCTGTTCGTGTGGTA
CAGCCTCACGATCGGGTACAACATCTACAACAAGGCGACCCTTAACCGGA
TGAACATCCCGTGGATTCTGAGCACCGTCCAGCTGGCGGTGGGCGCGGTC
TACGTGAGCTTGATCTGGGCGCTCGGCGTGCGAAAGGCGCCCAAGCTGTC
GGGCGACAACCTCAAGGCGGTGCTGCCCTTGGCGGCCCTCCACACCACCT
CCCACATCGCGGCGGTGGTCGGTCTCTCCGCCGGCGCGATCGGCTTCGTA
CAGATCGTGAAGGCGGGAGAGCCGCTCTTCACGGCGCTCTTCAGCGCTCT
GTTCCTGGGCCAGATTTTCGCCCTGCCCGTGTACGCCGCGCTTCTCCCCG
TGGTCGGCGGTGTCGCCATC
back to top