mRNA_Ecto-sp13_S_contig14507.3466.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig14507.3466.1
Unique NamemRNA_Ecto-sp13_S_contig14507.3466.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig14507.3466.1 vs. uniprot
Match: D8LT92_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LT92_ECTSI)

HSP 1 Score: 56.6 bits (135), Expect = 8.550e-8
Identity = 29/31 (93.55%), Postives = 30/31 (96.77%), Query Frame = -2 
Query:  260 SPGNSGWAPAPANLSPNGLFGDTAASASASA 352
            S GNSGWAPAPANLSPNGLFGDTAASA+ASA
Sbjct:   98 SSGNSGWAPAPANLSPNGLFGDTAASAAASA 128
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BLAST of mRNA_Ecto-sp13_S_contig14507.3466.1 vs. uniprot
Match: A0A6H5KCI5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCI5_9PHAE)

HSP 1 Score: 56.6 bits (135), Expect = 5.820e-7
Identity = 29/32 (90.62%), Postives = 29/32 (90.62%), Query Frame = -2 
Query:  257 SPGNSGWAPAPANLSPNGLFGDTAASASASAP 352
            S GNSGWAPAPANLSPNG FGD AASASASAP
Sbjct:  320 SSGNSGWAPAPANLSPNGFFGDRAASASASAP 351
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig14507.3466.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LT92_ECTSI8.550e-893.55Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KCI5_9PHAE5.820e-790.63Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig14507contigEcto-sp13_S_contig14507:3155..3507 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size354
Hectar predicted targeting categoryother localisation
Exons1
Cds size312
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462774.4745166-CDS-Ecto-sp13_S_contig14507:3154..34661681462774.4745166-CDS-Ecto-sp13_S_contig14507:3154..3466Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14507 3155..3466 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462774.4858108-UTR-Ecto-sp13_S_contig14507:3466..35071681462774.4858108-UTR-Ecto-sp13_S_contig14507:3466..3507Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig14507 3467..3507 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig14507.3466.1prot_Ecto-sp13_S_contig14507.3466.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig14507 3155..3466 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig14507.3466.1

>prot_Ecto-sp13_S_contig14507.3466.1 ID=prot_Ecto-sp13_S_contig14507.3466.1|Name=mRNA_Ecto-sp13_S_contig14507.3466.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=104bp
NNCQNQKSVRTEPRWCHHQAKKKKPGVAAPVGHAKHLLATTPTKATKNGP
PARPGPAIATPPNTAETVATACLTLTRKNEKKTTTTEPTLTPTPLCPRTT
RSG*
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mRNA from alignment at Ecto-sp13_S_contig14507:3155..3507+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig14507.3466.1 ID=mRNA_Ecto-sp13_S_contig14507.3466.1|Name=mRNA_Ecto-sp13_S_contig14507.3466.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=353bp|location=Sequence derived from alignment at Ecto-sp13_S_contig14507:3155..3507+ (Ectocarpus species13 EcNAP12_S_4_19m)
AACAACTGCCAGAACCAAAAATCAGTCCGAACCGAACCAAGGTGGTGCCA
CCACCAGGCAAAAAAAAAGAAGCCAGGCGTCGCCGCCCCAGTTGGCCACG
CCAAACATCTTCTGGCGACGACGCCAACGAAAGCAACGAAGAATGGACCT
CCTGCCCGACCCGGCCCGGCCATAGCGACGCCCCCCAACACCGCTGAGAC
CGTTGCGACTGCCTGCCTAACCCTAACTCGAAAAAACGAAAAGAAGACGA
CGACTACGGAGCCGACGCTGACGCCGACGCCGCTGTGTCCCCGAACAACC
CGTTCGGGCTGAGGTTAGCCGGCGCCGGCGCCCACCCGCTATTCCCCGGC
GAC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig14507:3155..3507+

>mRNA_Ecto-sp13_S_contig14507.3466.1 ID=mRNA_Ecto-sp13_S_contig14507.3466.1|Name=mRNA_Ecto-sp13_S_contig14507.3466.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=312bp|location=Sequence derived from alignment at Ecto-sp13_S_contig14507:3155..3507+ (Ectocarpus species13 EcNAP12_S_4_19m)
AACAACTGCCAGAACCAAAAATCAGTCCGAACCGAACCAAGGTGGTGCCA
CCACCAGGCAAAAAAAAAGAAGCCAGGCGTCGCCGCCCCAGTTGGCCACG
CCAAACATCTTCTGGCGACGACGCCAACGAAAGCAACGAAGAATGGACCT
CCTGCCCGACCCGGCCCGGCCATAGCGACGCCCCCCAACACCGCTGAGAC
CGTTGCGACTGCCTGCCTAACCCTAACTCGAAAAAACGAAAAGAAGACGA
CGACTACGGAGCCGACGCTGACGCCGACGCCGCTGTGTCCCCGAACAACC
CGTTCGGGCTGA
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