prot_Ecto-sp13_S_contig14496.3456.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig14496.3456.1
Unique Nameprot_Ecto-sp13_S_contig14496.3456.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length69
Homology
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BLAST of mRNA_Ecto-sp13_S_contig14496.3456.1 vs. uniprot
Match: D7FUH1_ECTSI (Putative methyltransferase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUH1_ECTSI)

HSP 1 Score: 137 bits (344), Expect = 6.020e-36
Identity = 65/65 (100.00%), Postives = 65/65 (100.00%), Query Frame = 0 
Query:    2 ESPKNCVALNNLGVALLALGQQDEGLSMLEKSFELDPFEPDVLVNLGIHWQEDGDLDRARSFYTR 66
            ESPKNCVALNNLGVALLALGQQDEGLSMLEKSFELDPFEPDVLVNLGIHWQEDGDLDRARSFYTR
Sbjct:  398 ESPKNCVALNNLGVALLALGQQDEGLSMLEKSFELDPFEPDVLVNLGIHWQEDGDLDRARSFYTR 462
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BLAST of mRNA_Ecto-sp13_S_contig14496.3456.1 vs. uniprot
Match: A0A7V2CK27_9BACT (Tetratricopeptide repeat protein (Fragment) n=1 Tax=Phycisphaerae bacterium TaxID=2026778 RepID=A0A7V2CK27_9BACT)

HSP 1 Score: 49.3 bits (116), Expect = 4.270e-5
Identity = 22/63 (34.92%), Postives = 40/63 (63.49%), Query Frame = 0 
Query:    3 SPKNCVALNNLGVALLALGQQDEGLSMLEKSFELDPFEPDVLVNLGIHWQEDGDLDRARSFYT 65
            +P + +A+NNL + L    Q++E L++L+++   +P   D   NLG+H+ E GD +RAR  ++
Sbjct:  440 NPHSWMAMNNLAMLLAGSHQENEKLALLKRAVRTNPDFADAHNNLGVHYLERGDTERARHHFS 502
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig14496.3456.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FUH1_ECTSI6.020e-36100.00Putative methyltransferase n=1 Tax=Ectocarpus sili... [more]
A0A7V2CK27_9BACT4.270e-534.92Tetratricopeptide repeat protein (Fragment) n=1 Ta... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePFAMPF13374TPR_10coord: 9..35
e-value: 7.6E-4
score: 19.3
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10coord: 1..68
e-value: 2.6E-13
score: 51.8
IPR011990Tetratricopeptide-like helical domain superfamilySUPERFAMILY48452TPR-likecoord: 3..66
IPR019734Tetratricopeptide repeatPFAMPF13176TPR_7coord: 44..67
e-value: 0.0013
score: 18.6
IPR019734Tetratricopeptide repeatPROSITEPS50005TPRcoord: 7..40
score: 8.585
IPR013026Tetratricopeptide repeat-containing domainPROSITEPS50293TPR_REGIONcoord: 1..68
score: 16.469

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig14496contigEcto-sp13_S_contig14496:3690..3896 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig14496.3456.1mRNA_Ecto-sp13_S_contig14496.3456.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig14496 3690..3896 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig14496.3456.1 ID=prot_Ecto-sp13_S_contig14496.3456.1|Name=mRNA_Ecto-sp13_S_contig14496.3456.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=69bp
RESPKNCVALNNLGVALLALGQQDEGLSMLEKSFELDPFEPDVLVNLGIH
WQEDGDLDRARSFYTRQV*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR011990TPR-like_helical_dom_sf
IPR019734TPR_repeat
IPR013026TPR-contain_dom