mRNA_Ecto-sp13_S_contig1446.3431.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig1446.3431.1
Unique NamemRNA_Ecto-sp13_S_contig1446.3431.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig1446.3431.1 vs. uniprot
Match: D7FTQ8_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTQ8_ECTSI)

HSP 1 Score: 70.9 bits (172), Expect = 3.340e-12
Identity = 34/36 (94.44%), Postives = 35/36 (97.22%), Query Frame = 1 
Query:  184 MVRWSKLSGVDTKTLVDVLDPGHLQELREGESRQLK 291
            MVRWSKLSGVD KTLVDVLDPGHLQELREGESRQL+
Sbjct:    1 MVRWSKLSGVDKKTLVDVLDPGHLQELREGESRQLR 36
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1446.3431.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FTQ8_ECTSI3.340e-1294.44Uncharacterized protein n=2 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig1446contigEcto-sp13_S_contig1446:12458..15313 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size291
Hectar predicted targeting categoryother localisation
Exons3
Cds size291
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462771.7226696-CDS-Ecto-sp13_S_contig1446:12457..125761681462771.7226696-CDS-Ecto-sp13_S_contig1446:12457..12576Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1446 12458..12576 +
1681462771.734449-CDS-Ecto-sp13_S_contig1446:14149..142521681462771.734449-CDS-Ecto-sp13_S_contig1446:14149..14252Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1446 14150..14252 +
1681462771.745186-CDS-Ecto-sp13_S_contig1446:15244..153131681462771.745186-CDS-Ecto-sp13_S_contig1446:15244..15313Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1446 15245..15313 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig1446.3431.1prot_Ecto-sp13_S_contig1446.3431.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig1446 12458..15313 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig1446.3431.1

>prot_Ecto-sp13_S_contig1446.3431.1 ID=prot_Ecto-sp13_S_contig1446.3431.1|Name=mRNA_Ecto-sp13_S_contig1446.3431.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=97bp
NHLDPALLCPARTGRRRKERRERTTPGHVVAGCRRAVELSCPLAPSLDRG
VCGCLRAAAAKMVRWSKLSGVDTKTLVDVLDPGHLQELREGESRQLK
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mRNA from alignment at Ecto-sp13_S_contig1446:12458..15313+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig1446.3431.1 ID=mRNA_Ecto-sp13_S_contig1446.3431.1|Name=mRNA_Ecto-sp13_S_contig1446.3431.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2856bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1446:12458..15313+ (Ectocarpus species13 EcNAP12_S_4_19m)
AACCACCTGGATCCTGCTCTTCTGTGCCCAGCGCGTACAGGGAGAAGGAG
AAAGGAGAGGAGAGAGCGGACGACGCCCGGCCACGTTGTGGCTGGGTGCC
GTCGTGCCGTCGAACTAAGGTAGGGGCATCGCCGGATCTCTCCGTCTAAA
AAGCAGCCGCTTGCGCGCCAGGGTAGTTTTTTTAGTCACCAACAGCAAGG
CGCACAAAAGATCACACCATTGCTGGAGTGTAGGAGCTTGGTCCCAACCG
ATAGGGTTCGAGACAGAGGTACGTGTAGAACCAAACGAGTGTGGATCCAA
TTCGTCAGGTATCTTGTGCCGATGACAGCAGTTGCATTGGTTGCAATAGT
ATGCAATTCCAGCCTGAGCGTTCGTCTTTGTCGGAGCCTTTGTTGGTTGG
TTGGTCTCTTGACGAGTGTTTCATGTTGCGGATCAGGAGGTACAACAGTA
CAACAGATATCTCGTACAGCGGTTTGGCTGCATGCTTTGCATGCTAGGTT
GGAGCACACCATGTCGTCCTGCCACCGCTTCTGTCTCCTCTACACTTGAT
ACATGCACAGCTCAACGTCTCGGGGTTGAAAGAGAGACGAATCGCCGCAG
GGCGTGCAAGCAACAACCTGTAGAAATTGTCGTTGTTTGACAACAACAAC
AGTCTTTCCCACTCAGAACGGGCTGGTGTAACAGTAGATAAGTACGACTC
CCCCAGCAGCAGGAGCGAGTAGCAGGCTCGTTTCAAGCCAGCGTGCTGTC
AAAACGCGAGCCGCTTGTAGTAAGGCTGGTTTCCGTCGAACGTGTGCATA
CCCTGCCAGTCTCTCCCTTTCCCTCGATCGATGCGCAGCTTGGCGTTTCG
CAGCTCGATGAGAGGAATCGTGCCACCACTGGACTACTAACTGTGTTGTA
CTGCTGTGCACGCGGCACGCCCGCGGACGCCCGCGGCCGGTGCATAACTC
ATCCACAAAAAACAAATTGCACACGAACAACCGCTGTTTTTGCATTGACA
CCGGACGGCCCATAGGCTGAGATCCCTGAACTCTTATTTAGATAGAGATG
GATAGACTAATCGTTGTGTTTTTTTACGAACAAGAGCTTGGACCAGAGTT
TAGTTTTGGGTACACCATCTTTGACATGAGATATCACACCCCCTGGACTG
ATTTCAACGGTTGATTACTTCAAGGCAGAAAGAGTGTCATGCTGAAAACG
AAAAGGGCGACTTTGAACCGCTTCGTTCTTATGTAGAGCTTTCCGAAAAC
GCATCGTTTGATCTATGCGTCGTCTTCGTAGAGAAATCGAGGTTTGCAAA
TTGGTCGAGGACGGATGATACTGACGTCACCTACGCAAACGGCGGTCAAC
CGTCCGTTTTTCACAACTCGAGCCACATGCGTGCCGACCCATCTTATTCG
TTTCTGGTACCCGCTAGGCACGAGGGACAAGAGAGGGGCAGTCTATGATA
TTACCTTTTGTTTCCATTTTGGGGTTCTAGAAGTGTGCACCTTTTTGGGT
CATTGGCGTGTGACCACGGAAAGGCGTTCCCCGTCAGTTGGACAGGAACA
AATGTTAGTGAAGCAACTGAGCAGACACCGCAACGGAGACAACAACAACA
ACATTTCATCTTGACGTTCAATAATTCTGATAGTCCCCTGGAACCGTCCG
TTGTACACCCCTCTTTTTTATGTGCCTAACGAAAACACGCAGTTGTCCCC
TTGCTCCCTCTCTAGACCGGGGTGTGTGCGGCTGCCTCAGAGCTGCTGCT
GCCAAGATGGTGCGCTGGTCGAAGCTATCGGGGGTTGATACGAAGGTGCG
TCTTTTGAGTGGTCTAGTCTAGTCTAGACTGTACACTATCCGGTGTAGAA
ATTGGAAGTATTATTGAGAAAGCCAGCTCGGCCGAGACGGACCGAGATGG
ATAGTCGAAGCGTTAAATTACAGCTACAGCTCGTTGTGTTCAAAAGAAGT
GTCGGTCTCTCCTTGTTGCGAGTGAGTCTGACTGACGTGGGCAACACACC
AGAGTGGTTCCCTGCAAAACGGACGCTTTACATGAGCCAAGATGCTGCGC
GCACGGCAACCAAAGGCAGGACCACGTACTACATATTGAACAACAACAGT
ACAAATACAATCGCAATCTTTTGCAAACCGCAGCTGACACATTCAAAGTA
GTACATGCAATTCTGTACTACATCGCAGCAGTATGAAGTACAGAGGCCCA
GCATCCATCCATCGACATCACAGGAATTGCTATAAGGTCACAACTTTCAT
GCTTGACTACACCAGTCATTACACAACCCACCCCGATTCCACCCCCACCA
TGTGACGGAACCAATGGAGGACCGGGAGCCAAAAAATGGTCTAGTGCGAC
TTCCGCTTCCTTCGGGCGTTAGGGTAGCGAGTGGGTCACACCGCAACACG
GATTTCAAACTCAATGCTTCACGCCTTGAAACGGTTTACGGGCCACACCA
GGTCCTTGGGGAATACAGTAGATACACACGTTCAGAGAGAGAGGGGGGTA
AGAAGCTGTACCCGGAATGTACGTGCGTCGCTGAAGAAACCCAAAGTAAA
CGTCTTGTTTGTGCGTTCGATCGTACGACAACGCCCGCGGTCCAAACGAG
CACCAAAACAGACAGGTGGATGGATCCTGCGTTCTCGTCCCCCTGCTGCG
TGTCAAGAGATGGATGTTGATTGGCACGTCACGTCCACCCCTTTTTGCTT
GTGCAAGCATGCACGCGTGGCGCTTCTTCTGTGGCTGCCACTATTAGTCT
GCTGTCTTCCTCCTGCCGCCACCACCCCGAACCTCAGACTCTGGTAGATG
TCTTAGACCCGGGGCATCTCCAAGAACTTCGCGAAGGGGAGTCGCGCCAG
CTGAAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1446:12458..15313+

>mRNA_Ecto-sp13_S_contig1446.3431.1 ID=mRNA_Ecto-sp13_S_contig1446.3431.1|Name=mRNA_Ecto-sp13_S_contig1446.3431.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=291bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1446:12458..15313+ (Ectocarpus species13 EcNAP12_S_4_19m)
AACCACCTGGATCCTGCTCTTCTGTGCCCAGCGCGTACAGGGAGAAGGAG
AAAGGAGAGGAGAGAGCGGACGACGCCCGGCCACGTTGTGGCTGGGTGCC
GTCGTGCCGTCGAACTAAGTTGTCCCCTTGCTCCCTCTCTAGACCGGGGT
GTGTGCGGCTGCCTCAGAGCTGCTGCTGCCAAGATGGTGCGCTGGTCGAA
GCTATCGGGGGTTGATACGAAGACTCTGGTAGATGTCTTAGACCCGGGGC
ATCTCCAAGAACTTCGCGAAGGGGAGTCGCGCCAGCTGAAG
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