mRNA_Ecto-sp13_S_contig14438.3411.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig14438.3411.1
Unique NamemRNA_Ecto-sp13_S_contig14438.3411.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig14438.3411.1 vs. uniprot
Match: A0A6H5L2H6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L2H6_9PHAE)

HSP 1 Score: 159 bits (402), Expect = 1.710e-43
Identity = 79/84 (94.05%), Postives = 80/84 (95.24%), Query Frame = 1 
Query:    1 GHVRSVRTLVKIGHAEVNHETRAGKTPLIEAARHGRTVVVRLLMELRAVISYKNRRGQTATWWANRLGHHDCALLMTREVKAET 252
            GHVRSVRTLV IGHAEVNHETRAGKTPLIEAARHGRT VVRLL+ELRAVISYKNRR QTATWWANRLGH DCALLMTREVKAET
Sbjct:  867 GHVRSVRTLVNIGHAEVNHETRAGKTPLIEAARHGRTAVVRLLIELRAVISYKNRRRQTATWWANRLGHRDCALLMTREVKAET 950
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BLAST of mRNA_Ecto-sp13_S_contig14438.3411.1 vs. uniprot
Match: D7FW96_ECTSI (Ankyrin, TRAF-type zinc finger protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FW96_ECTSI)

HSP 1 Score: 155 bits (393), Expect = 2.810e-42
Identity = 77/84 (91.67%), Postives = 78/84 (92.86%), Query Frame = 1 
Query:    1 GHVRSVRTLVKIGHAEVNHETRAGKTPLIEAARHGRTVVVRLLMELRAVISYKNRRGQTATWWANRLGHHDCALLMTREVKAET 252
            GHVRSVRTLVKIGHAEVNHETRAGKTPLIEA    RT VVR+LME RAVISYKNRRGQTATWWANRLGHHDCALLMTREVKAET
Sbjct:  403 GHVRSVRTLVKIGHAEVNHETRAGKTPLIEAXXXXRTAVVRVLMEFRAVISYKNRRGQTATWWANRLGHHDCALLMTREVKAET 486
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BLAST of mRNA_Ecto-sp13_S_contig14438.3411.1 vs. uniprot
Match: A0A1V9ZCW0_9STRA (Uncharacterized protein n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9ZCW0_9STRA)

HSP 1 Score: 52.8 bits (125), Expect = 4.590e-6
Identity = 29/86 (33.72%), Postives = 52/86 (60.47%), Query Frame = 1 
Query:    1 GHVRSVRTLVKIGHAEVN--HETRAGKTPLIEAARHGRTVVVRLLMELRAVISYKNRRGQTATWWANRLGHHDCALLMTREVKAET 252
            GH    + L+++G A+++     ++  TPLIEAAR GR+ +V+LL++ RA +S+++  G T   WA R G +   + M +  + +T
Sbjct:  451 GHANIAQYLIQLG-ADIDAIDTIQSKTTPLIEAARAGRSDIVKLLLDERACVSHQDSHGDTPLHWAARRGWNSLVIYMAQHAQQQT 535
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BLAST of mRNA_Ecto-sp13_S_contig14438.3411.1 vs. uniprot
Match: UPI0018ED384F (KN motif and ankyrin repeat domain-containing protein 4-like n=3 Tax=Centrarchoidei TaxID=1545897 RepID=UPI0018ED384F)

HSP 1 Score: 50.1 bits (118), Expect = 4.160e-5
Identity = 30/79 (37.97%), Postives = 48/79 (60.76%), Query Frame = 1 
Query:    1 GHVRSVRTLVKIGHAEVNHETRAGKTPLIEAARHGRTVVVRLLMELRAVISYKNRRGQTATWWANRLGH-HDCALLMTR 234
            G +  VR L+++G+  + H ++ G+T L  A RHGR V+VRLL+   A  + ++ +G TA  +A+  GH H   LL+ R
Sbjct:  765 GGMEVVRKLMELGNVNI-HSSQTGQTALHLAVRHGRVVMVRLLLSCGADTNIQDNQGTTALMFASERGHTHIARLLLER 842
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig14438.3411.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A6H5L2H6_9PHAE1.710e-4394.05Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FW96_ECTSI2.810e-4291.67Ankyrin, TRAF-type zinc finger protein n=1 Tax=Ect... [more]
A0A1V9ZCW0_9STRA4.590e-633.72Uncharacterized protein n=1 Tax=Thraustotheca clav... [more]
UPI0018ED384F4.160e-537.97KN motif and ankyrin repeat domain-containing prot... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig14438contigEcto-sp13_S_contig14438:585..836 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score157.5
Seed ortholog evalue2.7e-36
Seed eggNOG ortholog2880.D7FW96
Model size252
KEGG koko:K08873
KEGG Pathwayko03015,map03015
Hectar predicted targeting categoryother localisation
Exons1
EggNOG free text desc.TNF receptor-associated factor
EggNOG OGsCOG0666@1,KOG0297@1,KOG0297@2759,KOG4177@2759
EC2.7.11.1
Cds size252
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01001,ko03019
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462770.4812663-CDS-Ecto-sp13_S_contig14438:584..8361681462770.4812663-CDS-Ecto-sp13_S_contig14438:584..836Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14438 585..836 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig14438.3411.1prot_Ecto-sp13_S_contig14438.3411.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig14438 585..836 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig14438.3411.1

>prot_Ecto-sp13_S_contig14438.3411.1 ID=prot_Ecto-sp13_S_contig14438.3411.1|Name=mRNA_Ecto-sp13_S_contig14438.3411.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=84bp
GHVRSVRTLVKIGHAEVNHETRAGKTPLIEAARHGRTVVVRLLMELRAVI
SYKNRRGQTATWWANRLGHHDCALLMTREVKAET
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mRNA from alignment at Ecto-sp13_S_contig14438:585..836-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig14438.3411.1 ID=mRNA_Ecto-sp13_S_contig14438.3411.1|Name=mRNA_Ecto-sp13_S_contig14438.3411.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=252bp|location=Sequence derived from alignment at Ecto-sp13_S_contig14438:585..836- (Ectocarpus species13 EcNAP12_S_4_19m)
GGTCACGTGCGGTCCGTTCGAACCCTGGTGAAAATCGGACACGCGGAAGT
CAACCACGAAACCCGCGCCGGCAAGACTCCCCTGATCGAGGCCGCGAGGC
ACGGCCGGACCGTCGTCGTGCGCCTCCTTATGGAGCTCCGTGCGGTGATC
TCGTACAAGAACCGGCGCGGACAGACGGCGACGTGGTGGGCCAACAGACT
CGGACACCACGACTGCGCCTTGCTCATGACGAGGGAGGTTAAGGCGGAGA
CC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig14438:585..836-

>mRNA_Ecto-sp13_S_contig14438.3411.1 ID=mRNA_Ecto-sp13_S_contig14438.3411.1|Name=mRNA_Ecto-sp13_S_contig14438.3411.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=252bp|location=Sequence derived from alignment at Ecto-sp13_S_contig14438:585..836- (Ectocarpus species13 EcNAP12_S_4_19m)
GGTCACGTGCGGTCCGTTCGAACCCTGGTGAAAATCGGACACGCGGAAGT
CAACCACGAAACCCGCGCCGGCAAGACTCCCCTGATCGAGGCCGCGAGGC
ACGGCCGGACCGTCGTCGTGCGCCTCCTTATGGAGCTCCGTGCGGTGATC
TCGTACAAGAACCGGCGCGGACAGACGGCGACGTGGTGGGCCAACAGACT
CGGACACCACGACTGCGCCTTGCTCATGACGAGGGAGGTTAAGGCGGAGA
CC
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