mRNA_Ecto-sp13_S_contig14407.3389.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig14407.3389.1
Unique NamemRNA_Ecto-sp13_S_contig14407.3389.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig14407.3389.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig14407contigEcto-sp13_S_contig14407:2..2613 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size255
Hectar predicted targeting categoryother localisation
Exons2
Cds size255
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462768.9582763-CDS-Ecto-sp13_S_contig14407:1..1031681462768.9582763-CDS-Ecto-sp13_S_contig14407:1..103Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14407 2..103 +
1681462768.9692733-CDS-Ecto-sp13_S_contig14407:2460..26131681462768.9692733-CDS-Ecto-sp13_S_contig14407:2460..2613Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14407 2461..2613 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig14407.3389.1prot_Ecto-sp13_S_contig14407.3389.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig14407 2..2613 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig14407.3389.1

>prot_Ecto-sp13_S_contig14407.3389.1 ID=prot_Ecto-sp13_S_contig14407.3389.1|Name=mRNA_Ecto-sp13_S_contig14407.3389.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=85bp
ERRTAGATAAGGGGLFCRGGRTVVDLRRLVHHGEAREARGQVLRDAGLQQ
VGSEAVPRRVVFRRGWHVQRRRLQRRQEVRLLRWC
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mRNA from alignment at Ecto-sp13_S_contig14407:2..2613+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig14407.3389.1 ID=mRNA_Ecto-sp13_S_contig14407.3389.1|Name=mRNA_Ecto-sp13_S_contig14407.3389.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2612bp|location=Sequence derived from alignment at Ecto-sp13_S_contig14407:2..2613+ (Ectocarpus species13 EcNAP12_S_4_19m)
GAACGAAGAACAGCGGGAGCAACAGCAGCAGGGGGGGGTGGGTTGTTCTG
TCGCGGGGGAAGGACTGTGGTGGACTTGCGGCGCCTGGTCCATCATGGGG
AGGTGAGAAAGGTTTTCGTGTTTGCTTGACGGCGAGAGGCGTGTTTTGCT
TGACGGCAATAGGCGTGTTTTGCGTGTTGGGGAGGGGCGTAGTCTCCCTT
GGGATGTGCATACAGTATGTATGTACTGAAATTCTGTCGTGGGATCGGGG
TGCGTTTTCTCTCCCTTGGCGAGTTGATATGATGTCAAGGGTCGTGTCGT
GGTGGTGTTTCCGTTCTGTTAGTCTGCGATCGAGGTGTTGTCATGAAAGG
TCCATGGCTGCACCAAGACAGAACGAAGACTCCTGGTCGGGATCAAGACT
GACCGACCCCGTGTGCGCGCCTCTTCCTCTACACGCGTCTCCAAATTTCC
CAAAATCCTATTTCCAACTTAAAACTCTGCTGACAGCCCTGTGGCCTGTT
GTTGGGAGTCTCGGCAACCGATAGCGTCTGCAGTAGGCAGCGCTGACGCC
CCCTTCCCCCCCCCCACACGAGCTGGCCCGTTCGGACAGGCGGCGAGTGT
TCTTGCGAGATGTTCGGGGAGGTTGTTGGTCCGTCCCACCCGCTCGCTCC
CTCCCTGGTCGCACACACACACACAGACAGAATCGCACCCCTCGCACTCA
CACCGATCGGCTGCCCGAGCCGACACTGACTACTCCAAGTCTCCCGGCGC
CGAGTTGTATACCAGCGATTTGTCTGTCCACCGCCGCGTGCCCTGCGTTT
GTGCATGCCTACTTGCGGGGAACTAACTCGCGACTCGACCTATCTATCCG
CAAGCGGCAATGCTCCGGTGAGGGCTTCGAGACAACGGAGACGTTCCAGG
TGACGGGCATGAAGAGGTAGTGCAGCGCCACCACTCCTTAGCGCCCGTCA
CCTGGAACTTCCCCGTTGTCTCGCAGCCCTCTCTGGCGCAACCTCCTTAG
CTGGTGGATAGACCGGTCGAGTCGTGAATTACTTCTCCGCAAGTAGGCAT
GCACAAACGCAGGGATGCGGCGGTTGACAAATCGCTGGTACGTTACACAA
CTCGGCGCTGGCAGACTTGGAGTGGTCAGTGTCGGCTCGGGCAGCCGGTC
GGTGTGAGTGGGGGGGTGCGAGTCTGTCTTGTGTGTGTGTGCGACCAGGG
AGGGAGCGAGCGGGTGGGACGGACCAACAACCTCCCCGAACGTCTCGCAA
GAACACTCGCCCCCTGTCCGAACGGGCCGGCTCGTGTGGGGAGGGGGGAA
GGGGGCGTCAGCGCTGCCTGCTGCAGACGCTATAGGTCGCAGAGACTGCC
CAAATACAGGCCAGAGGGCGTCCATGCTTTTGTTCCGACGAATCTACAGT
AGGATTATGTCCGATTCTCTCACAGACCTGTCCAATCCTCTCAAACTATA
TACCGGTAAACATACCGATCCACGCCATAACCCTCCGATATTCCAGGTAC
TCTTTCAAATATTTCCCGTCCTTTTCCACCCACTCTCTTCCCAAGTGGTA
CGCGTAATTGCACTCAATTCACATCAGCCCTGTCCAACTCCCTTCTCTAA
CCCTTAGTTACAGCAGTAGCAGCTCTCGGTAAAGCGGCCCGATTACCCAC
ATGTCGATGTGGCTTCTTCGTGTTCATGGAAGGCGTTATTTTTGTAGGCC
GGGGATACAGTCGTCCTGGCCGTTGATGCCAATACAGGTCCGTCGCAACG
CGCAACGGTGTTCAGAGAAGTGGTTGGCTTGTGGCATACATTCACGTATC
TCATAGTACGAGTCATTGATACGCTAGTCTGGCCTTCAAGACGTACGTAT
CCCTCCCTCCCGATCGTGTGTACCGCATCGACTCATCGCGGTCGGCCTCT
CAAGAAGCATTCACGCCCCCCCCCCCCGGTGTTTGCCATCGGGGTTGGGT
TTTCGTCGTTTGTCAACGACATTGAAAAACAATCCGACTGCTTGGTGAGC
TCGACATCCAGGTAACCGCTTTTTTTTTTTTTTTTCTTTCTTTGCGGTAA
CCATAGTGGTCGAGTAGATTACCTTGTGCGGGGTCGATAACCCTCACTCC
GCTCAAAGGGGATGATCGCACCACGTTATGTTAAGTTGGCCAAGCACCCT
CGAGGCAGTTACACAGCAAAGCTTATAACTGTCTCTGGAAGTGAAAACAC
CAGAACTAAAATTAAGTTTTTCGCAGCTGTCATCCGTTGCAAAGAAGTAA
GCAAGAGATGCCAAACACCCTTAGCAGGATGCAGCGCACCATCCATGCGA
CTCGCCGAATACCTCGCGGCGCTTCGCGCTTGGTGATGTGAGACCCTGTC
CCGATGAGAACCCGGCGTGCTCCGTCCTGGCTTTGTGGGGATGCGAGGTT
AGTGGTCAAAACATGCACGACTTTGTGTACCGTCCCGCCCCCCCTCGGCT
TGCTCGCAGGCGCGAGAAGCAAGAGGACAGGTTTTGCGTGATGCCGGACT
ACAACAAGTCGGTAGCGAGGCTGTTCCTCGACGGGTCGTCTTCCGCCGGG
GGTGGCACGTGCAGCGGCGCCGATTACAACGAAGACAGGAGGTCCGCCTC
CTCCGTTGGTGC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig14407:2..2613+

>mRNA_Ecto-sp13_S_contig14407.3389.1 ID=mRNA_Ecto-sp13_S_contig14407.3389.1|Name=mRNA_Ecto-sp13_S_contig14407.3389.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=255bp|location=Sequence derived from alignment at Ecto-sp13_S_contig14407:2..2613+ (Ectocarpus species13 EcNAP12_S_4_19m)
GAACGAAGAACAGCGGGAGCAACAGCAGCAGGGGGGGGTGGGTTGTTCTG
TCGCGGGGGAAGGACTGTGGTGGACTTGCGGCGCCTGGTCCATCATGGGG
AGGCGCGAGAAGCAAGAGGACAGGTTTTGCGTGATGCCGGACTACAACAA
GTCGGTAGCGAGGCTGTTCCTCGACGGGTCGTCTTCCGCCGGGGGTGGCA
CGTGCAGCGGCGCCGATTACAACGAAGACAGGAGGTCCGCCTCCTCCGTT
GGTGC
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