mRNA_Ecto-sp13_S_contig14400.3385.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig14400.3385.1
Unique NamemRNA_Ecto-sp13_S_contig14400.3385.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
[Close]
BLAST of mRNA_Ecto-sp13_S_contig14400.3385.1 vs. uniprot
Match: D8LBJ2_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LBJ2_ECTSI)

HSP 1 Score: 351 bits (900), Expect = 1.050e-112
Identity = 203/225 (90.22%), Postives = 209/225 (92.89%), Query Frame = 1 
Query:    1 MKQHVVVACLCLLASVDGSTPLPARPAPVQRAGFIVNEGGSKIVSGDSSSSSGSSIVADEAAATPERPSFVSVGIRSGCAREKAATTATLRNKDRTGTSAASRLRGGSTWIPNPPVMVRESDTTPKTHSSAAEPVSSHPPTGAS--SSCNSRHGAEFAVSKQRIVDDSD--TDSSFVEDEDQAAGVXXXXXXXXXXRVGALPSFPRTLPATHGKAPFNKKFAWVP 663
            MKQH+VVACLCLLASVDGS PL ARPAPVQRAGFIVNEGGSKIVSGDSSSSSGS++V +EAAATPERPSFVSVGIRSGCAREKAATTATLRNKDR GTSAASRLRGGSTWIPNPPVMVRESDTTPKTH+SAAEPVSSHPPTGAS  SSC+SRHGAEFAVSKQRIVDDSD  TDSSFVE        XXXXXXXXXXRVGALPSFPRTLPATHGKAPFNKKFAWVP
Sbjct:    1 MKQHLVVACLCLLASVDGSAPLLARPAPVQRAGFIVNEGGSKIVSGDSSSSSGSNVVTEEAAATPERPSFVSVGIRSGCAREKAATTATLRNKDRAGTSAASRLRGGSTWIPNPPVMVRESDTTPKTHNSAAEPVSSHPPTGASGSSSCHSRHGAEFAVSKQRIVDDSDSDTDSSFVEXX-XXXXXXXXXXXXXXXRVGALPSFPRTLPATHGKAPFNKKFAWVP 224
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig14400.3385.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LBJ2_ECTSI1.050e-11290.22Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig14400contigEcto-sp13_S_contig14400:240..4000 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size2416
Hectar predicted targeting categorychloroplast
Exons3
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-27_003780.1
Cds size666
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462768.736761-UTR-Ecto-sp13_S_contig14400:239..19891681462768.736761-UTR-Ecto-sp13_S_contig14400:239..1989Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig14400 240..1989 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462768.7466908-CDS-Ecto-sp13_S_contig14400:1989..23351681462768.7466908-CDS-Ecto-sp13_S_contig14400:1989..2335Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14400 1990..2335 -
1681462768.7564738-CDS-Ecto-sp13_S_contig14400:3001..32271681462768.7564738-CDS-Ecto-sp13_S_contig14400:3001..3227Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14400 3002..3227 -
1681462768.7667031-CDS-Ecto-sp13_S_contig14400:3906..40001681462768.7667031-CDS-Ecto-sp13_S_contig14400:3906..4000Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14400 3907..4000 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig14400.3385.1prot_Ecto-sp13_S_contig14400.3385.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig14400 1990..4000 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig14400.3385.1

>prot_Ecto-sp13_S_contig14400.3385.1 ID=prot_Ecto-sp13_S_contig14400.3385.1|Name=mRNA_Ecto-sp13_S_contig14400.3385.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=222bp
MKQHVVVACLCLLASVDGSTPLPARPAPVQRAGFIVNEGGSKIVSGDSSS
SSGSSIVADEAAATPERPSFVSVGIRSGCAREKAATTATLRNKDRTGTSA
ASRLRGGSTWIPNPPVMVRESDTTPKTHSSAAEPVSSHPPTGASSSCNSR
HGAEFAVSKQRIVDDSDTDSSFVEDEDQAAGVAGSGGGGGGGRVGALPSF
PRTLPATHGKAPFNKKFAWVP*
back to top

mRNA from alignment at Ecto-sp13_S_contig14400:240..4000-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig14400.3385.1 ID=mRNA_Ecto-sp13_S_contig14400.3385.1|Name=mRNA_Ecto-sp13_S_contig14400.3385.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3761bp|location=Sequence derived from alignment at Ecto-sp13_S_contig14400:240..4000- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGAAGCAACACGTAGTAGTTGCATGCCTTTGCCTGCTAGCATCTGTGGA
TGGAAGCACGCCTCTGCCAGCCCGTCCGGCCCCGGTCCAACGCGGTGAGT
GGATACTCCGCGTTCGTGATTTCGCGCGAGTGCGCAGCGGTAGTCTCCAA
CATATTTTCTGTTGAAAAATGTACCGCAGTTACGTTTTATCTTCAACAAG
CTCGGCGCTCGTGACCCTGCGAAGAAGTCCGCTGACCGTTGGGGCGCCCC
CGTCCGCACCCCATCAGGGCAGCGCAACAAGTAGTCGTTGTCACCTCTGA
TGCACAACAGCGGGCCGGTGATGCTTGTGTGTCGAGCCGATGAGTTTGGG
TGGGCGACTGAGAAAATATCACACCATTGGAACGTGGGAAATGGAACGAT
TACCTGCCCTTGCTTTTTTGCCCTGCCCTCTGTCTTGAAGGTGCAATCGA
TAACCTTTTTTTTCGAGAAAAGACCCCCAATCCCAGTCAGCAGCACCAGC
AAACGGCACAGCTTGTGAGAATAGCAAAGAAGAACCGTCCATTTCGTAAA
TGCCGCTGGCTGTACCCCACCACCAGTGTGCCTCCTCTCGTCGCGGGTGG
TCGCCGCTTGTAGGGTTACGACCCCACGCAATAAGTGTGTTGCAACAACA
GCAGTCCTTTGCTTCTTATTCGGGTTGTTGTTGCGGCTGGCTGGGTTGTG
CCGGCGTCTGCGTTTGCGTCGGTCGTCTAATTAATTCCCCCCCAATCGCG
TGGTCTTCGTTGTCTCCTTGCAGCTGGTTTCATCGTCAACGAGGGGGGCT
CCAAGATCGTCAGCGGCGACAGCAGCAGCAGCAGTGGCAGCAGCATTGTC
GCCGACGAGGCTGCAGCAACACCCGAGCGGCCGAGCTTCGTGTCGGTGGG
CATTCGCAGCGGCTGCGCGAGGGAAAAAGCGGCCACGACGGCGACCCTGC
GGAATAAAGACCGTACCGGGACCTCGGCGGCGAGCCGGCTGCGAGGAGGG
TGAGAGAGAGCGGCGAAAAAAGCCTTGGATGTTTTTCGCGTACCGCCGTC
TCACGTTTTCCTTGCGCAAACAAAGAAAAGCCTGTTTTTTCAACAGCGTG
GCTTTTTGATCCACTGCTTTGTACACTGCCGCCGTCATGAATACTCCTAT
TTTCAAAGAGCCAGTTGCCTCTAGGTATCGAGATTAAGGCATGGACCACA
TCGTAAGAAACTCCAGGAATTTTGCATAGGCTCGATAGCTCTCCGTTTCT
TGAATCCTCCGCGCGCGGGGTGCAGCAGCGTGTATTTTTCTTGGATGCAT
TGTGGTGCCAGGGGTTGTTCCCCTGTGTGCTGCCTTTCAAAGTTTGTCGC
GAAAAAGAAGGGTCCAGGAAATTACTTATCGCCGTCAACCTAGACACATG
AAAGTACGTTGCAACGCTGTCGCGATACAAGCCTTGTTGTGTTACAAATT
TCACCCCCTATTTCAGGAGTATATGTTGTACGCAGTTGTACCCAAGTATG
CGTAGGAGACGAAGGTAATTCAGTAACGACGTAGCCGCCGAGCCTATTTC
GTCCTCTCATTCACACACTCGGCTTCTTGTAGCACAAAACCCGACGCGAA
CGTCATCACAACAGGCGACTAAATATTTTGCAAATTTTAAAATAATAATT
AAAATACACGCGCAGGTCGACCTGGATTCCCAACCCGCCAGTGATGGTGA
GGGAATCGGACACAACGCCGAAGACGCACAGCAGCGCCGCCGAACCCGTC
AGCTCACACCCGCCGACAGGAGCCAGCAGCAGCTGCAACAGCAGGCATGG
CGCCGAGTTCGCCGTCTCGAAGCAACGCATCGTCGATGACAGCGATACCG
ACTCTTCCTTCGTCGAGGACGAGGACCAAGCCGCCGGCGTCGCTGGTAGC
GGCGGTGGCGGCGGGGGAGGGAGGGTTGGCGCGCTACCGTCGTTCCCTAG
GACTCTGCCCGCCACTCACGGCAAGGCGCCGTTCAACAAGAAGTTCGCCT
GGGTGCCCTGAAGCGGCGACCGTGTGCCGTGGACATGGGAGTCGTGTGTG
TGCGGGCCCTTCGCTGATGATGTGTTTCGTAGTCGTTTTGGCACCTTTTT
TATGTCTTTTTGACTTAAGCAGGAGTATCATAGGATACTCGATACCTGGG
GGGTTTGTGAGGAGCGCTCGAGGTTGTTTTGGTTGTCCGAGAGTGGAAGG
GAGAGATGAGATGGCGTCGATGATCGGGTGAAAGCGGGTGCGCCGCTGCT
GCTGCCTCCCTCCGTTTGCCCTCCGCCATGTGTTGTTTTCGACATGTGAT
ACTGGTGGGGCTCACATCGATCAGGGTGTTGTTTGCTGTACCGGAGCGCT
GTGGACTACTGCTGTTGTTGAGCGCTCCTCGTGTAAGCGTCTTGATTGCT
ATGTCTCGCGCGCAAACGAACAAAGTTGTGCTGGTCGTCGCGATTGATTA
AGGATTTATTCTGGTATGCAGAGCCAGTGTTTGTCTACCTTGTGTCAAGG
CCGTTTACGTACACGCACGTACACCTGCGGCGACGTACATGTGCTCTCTG
GAAGCACGTAAGGACTTAAGAAAGAGTTGGAAAGTCATGGCATGTTGCTA
CTAAAGTAGTGTCTTGCCGCAGCTGGCAATAGCATCTCGCGAAGCTTCCA
TACCCAACCATTGGGAGTTTTACGCTCGACGTCTTTTCGGAGCATTTTAG
CGCAAGCAAGAAGGGCCTGATTGATGGGGGGTGGGGGGAGAGAAGCAGGT
TCACGCCAGCTACACCAGGTGCAAGAGAGAGCGTTCAGACGTGAGGCAAT
GGGCCGTTTCGTCCACGATGGTTGCCTGGTGCTTGTCTCACAGGGGACGG
GTGGTGACGCGAGGCGAGCGACCAGAGAGGGCAGGTCGGGGGCCGGGGGG
GGGGGGGATAGTGATGGTAGAGATGAAGTCAGGTAAGGGAAAGAAGAAAC
TGCAAGCCCCTGGGGAGCGGAAATTTGTAGGCGAGCTGATGGGGCACCGA
CCACGCCTCCTTTGGGGTTGTACAAAAATCACCACGAAGAAATAAGGCGA
GTACGTAGATAACTTGTATGGTAGTTACCACAGGAGAGGGTGCAGGGACG
CGGCAGAACCTGAGCGATGCTTGCCAGCCAGACCATTCCTGATGCGAGCG
GAGTAAGGGGGGAGTAAAGCGCACACTCGCCATTCCTTGTTGTCGTATTG
TAGACGGTGTGTTTTGTCCTCCTGGACGTGAAAATCTTCCATCGAATTCG
ACGCGGCATCGACGATCTCTGTTTGTTGTTTCCCGTGTATTGTATGCGTA
TTTTGCGGTGGCCCCGGTTGTTGGCGGGGGGGGGGGGGGGGGAGTTCGAA
AAGAGGCGTTATCACTGGTGGATTGAAGTAGTGGAGAACGAGGTGTGCGG
TACCAAGAGCTTGTGGATCGGGGTGCGAGATAACCAGGCCAACGAATATG
TTCGACGCTTGGGTAGAAGGGATACCGATTCGACGTTGCGAAACCGTGAA
GACGGTGAGGCCAACCGATCGGTACGGCCCAGCGAGCGGCAGCTCCGCGC
TGGGTCCGGTGAGGAAGGGGTAGTAGGGTACAAAAGTACAAGTTGTCATG
TCATGGGCGCATTGCATTCGTGACCTTGGTGTAGAGCTGTATCGTTAGTA
CAGGCAGGCTGCTCCTCCTTGGCGCGCGATTTTTTTATGTTCTCTGTGTT
TCAGCGCATGAGCGCTCATGATTGGGAAACATGAACGACGTGGGGAGTCT
TGAGACTCGGC
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig14400:240..4000-

>mRNA_Ecto-sp13_S_contig14400.3385.1 ID=mRNA_Ecto-sp13_S_contig14400.3385.1|Name=mRNA_Ecto-sp13_S_contig14400.3385.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=666bp|location=Sequence derived from alignment at Ecto-sp13_S_contig14400:240..4000- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGAAGCAACACGTAGTAGTTGCATGCCTTTGCCTGCTAGCATCTGTGGA
TGGAAGCACGCCTCTGCCAGCCCGTCCGGCCCCGGTCCAACGCGCTGGTT
TCATCGTCAACGAGGGGGGCTCCAAGATCGTCAGCGGCGACAGCAGCAGC
AGCAGTGGCAGCAGCATTGTCGCCGACGAGGCTGCAGCAACACCCGAGCG
GCCGAGCTTCGTGTCGGTGGGCATTCGCAGCGGCTGCGCGAGGGAAAAAG
CGGCCACGACGGCGACCCTGCGGAATAAAGACCGTACCGGGACCTCGGCG
GCGAGCCGGCTGCGAGGAGGGTCGACCTGGATTCCCAACCCGCCAGTGAT
GGTGAGGGAATCGGACACAACGCCGAAGACGCACAGCAGCGCCGCCGAAC
CCGTCAGCTCACACCCGCCGACAGGAGCCAGCAGCAGCTGCAACAGCAGG
CATGGCGCCGAGTTCGCCGTCTCGAAGCAACGCATCGTCGATGACAGCGA
TACCGACTCTTCCTTCGTCGAGGACGAGGACCAAGCCGCCGGCGTCGCTG
GTAGCGGCGGTGGCGGCGGGGGAGGGAGGGTTGGCGCGCTACCGTCGTTC
CCTAGGACTCTGCCCGCCACTCACGGCAAGGCGCCGTTCAACAAGAAGTT
CGCCTGGGTGCCCTGA
back to top