mRNA_Ecto-sp13_S_contig14374.3372.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig14374.3372.1
Unique NamemRNA_Ecto-sp13_S_contig14374.3372.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig14374.3372.1 vs. uniprot
Match: D7FL28_ECTSI (Midasin n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FL28_ECTSI)

HSP 1 Score: 65.9 bits (159), Expect = 6.060e-11
Identity = 33/33 (100.00%), Postives = 33/33 (100.00%), Query Frame = 3 
Query:  108 GEGGEWRPDMSGGEGKGEGQGNDKRRRPDAPNP 206
            GEGGEWRPDMSGGEGKGEGQGNDKRRRPDAPNP
Sbjct: 4940 GEGGEWRPDMSGGEGKGEGQGNDKRRRPDAPNP 4972
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BLAST of mRNA_Ecto-sp13_S_contig14374.3372.1 vs. uniprot
Match: A0A6H5JCJ9_9PHAE (Midasin n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCJ9_9PHAE)

HSP 1 Score: 62.4 bits (150), Expect = 1.010e-9
Identity = 31/33 (93.94%), Postives = 32/33 (96.97%), Query Frame = 3 
Query:  108 GEGGEWRPDMSGGEGKGEGQGNDKRRRPDAPNP 206
            GEGGEWRPDM+ GEGKGEGQGNDKRRRPDAPNP
Sbjct: 4158 GEGGEWRPDMASGEGKGEGQGNDKRRRPDAPNP 4190
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig14374.3372.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FL28_ECTSI6.060e-11100.00Midasin n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
A0A6H5JCJ9_9PHAE1.010e-993.94Midasin n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig14374contigEcto-sp13_S_contig14374:1101..2192 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size208
Hectar predicted targeting categoryother localisation
Exons2
Cds size192
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462767.600083-CDS-Ecto-sp13_S_contig14374:1100..12631681462767.600083-CDS-Ecto-sp13_S_contig14374:1100..1263Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14374 1101..1263 -
1681462767.6174347-CDS-Ecto-sp13_S_contig14374:2148..21771681462767.6174347-CDS-Ecto-sp13_S_contig14374:2148..2177Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14374 2149..2177 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462767.6277509-UTR-Ecto-sp13_S_contig14374:2177..21921681462767.6277509-UTR-Ecto-sp13_S_contig14374:2177..2192Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig14374 2178..2192 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig14374.3372.1prot_Ecto-sp13_S_contig14374.3372.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig14374 1101..2177 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig14374.3372.1

>prot_Ecto-sp13_S_contig14374.3372.1 ID=prot_Ecto-sp13_S_contig14374.3372.1|Name=mRNA_Ecto-sp13_S_contig14374.3372.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=64bp
MKNKKKRRGRMGEGVLPMGEMIVAVVVRGKRAREESGAPTCQAEKARERV
KGTISEGDRMPPIR
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mRNA from alignment at Ecto-sp13_S_contig14374:1101..2192-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig14374.3372.1 ID=mRNA_Ecto-sp13_S_contig14374.3372.1|Name=mRNA_Ecto-sp13_S_contig14374.3372.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1092bp|location=Sequence derived from alignment at Ecto-sp13_S_contig14374:1101..2192- (Ectocarpus species13 EcNAP12_S_4_19m)
ACGAGAAAGGAGAAGATGAAGAACAAGAAAAAGAGGAGGGGCAGGTGAGC
TGATGCATTCCCTTTTTTATTTTCATTCCTTGGGGCGTCTCGCTCGTGAC
ACCGAAGGTGCTTTTTATTCTCGGCACTTCGGGTATCTCTTGGCTGCATG
TATACCATTTTTGAAGACGTGTCCATGGACGTGGTACCTATTCCCGCAGG
TCTATCTGCCACAGAGTTCCGCCAAACCATTGGCGTGTTCGTCTGCCATG
ACCTGCGCAGATTAAAGCTTGTCAGTATTATGATAGGAACCGTGGGGTAC
AGGGGTGGTGGTCACATCGTCTGCACACTACCCGCACGGGCTGAACGCTG
GCAACACGACACAACGTTTTCAGCATGACCTGTACGCTGTGCTTTCGTTG
TTTCAAATGGTGCTTCTGACGCAGTGGTTGGCTTTGAGTTCCGTAGCGGA
CAAAACTTTTTGAAAGGTTTGCGCCAAGAGTCGTTTGGTTTTATTCATGT
ATGGTAGCCTCCCCAAGGGTGCAATGTTAAAAAGATTATCGTTTCTTGTT
TATTTTTGGCGTATGAAGGTTCTGGGCAGAGCCTGCTCATGTACGACCTT
GAGACAACCAACTCTCACGTATTTATGAATGCAGAGTGTGTTGGCTTGTG
TGTCTTGCTGTATCGGACTGATGGCAAGGTGGTTTCATGTCTCTTAATCT
ACCATGAGGCAGGTCCGGCGGTCCTGCACAAATGAACTCACTGGCTTTGA
CCCACCAGTCGTTGGACACGTCGAGTGCTTAATCTCCCAACGCCAAATTC
CACGAGTTCGTGCGCCCAATGCTTCCAAGTCTTTCGCGTTCTCTGGTCTT
TGACAGGCGGCATGTCAGTACACACCGCGCGTGTGCATGTTTGTCTGTGA
CTGTGACTGTGACTGCTGTGTGACTGCAGGATGGGGGAGGGAGTGCTCCC
GATGGGCGAGATGATTGTGGCGGTGGTGGTCAGGGGGAAGAGGGCGAGGG
AGGAGAGTGGCGCCCCGACATGTCAGGCGGAGAAGGCAAGGGAGAGGGTC
AAGGGAACGATAAGCGAAGGAGACCGGATGCCCCCAATCCGT
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig14374:1101..2192-

>mRNA_Ecto-sp13_S_contig14374.3372.1 ID=mRNA_Ecto-sp13_S_contig14374.3372.1|Name=mRNA_Ecto-sp13_S_contig14374.3372.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=192bp|location=Sequence derived from alignment at Ecto-sp13_S_contig14374:1101..2192- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGAAGAACAAGAAAAAGAGGAGGGGCAGGATGGGGGAGGGAGTGCTCCC
GATGGGCGAGATGATTGTGGCGGTGGTGGTCAGGGGGAAGAGGGCGAGGG
AGGAGAGTGGCGCCCCGACATGTCAGGCGGAGAAGGCAAGGGAGAGGGTC
AAGGGAACGATAAGCGAAGGAGACCGGATGCCCCCAATCCGT
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