mRNA_Ecto-sp13_S_contig14371.3369.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig14371.3369.1
Unique NamemRNA_Ecto-sp13_S_contig14371.3369.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig14371.3369.1 vs. uniprot
Match: A0A6H5L7M5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L7M5_9PHAE)

HSP 1 Score: 148 bits (373), Expect = 2.990e-43
Identity = 73/76 (96.05%), Postives = 74/76 (97.37%), Query Frame = 1 
Query:    1 GQQLQGLVPIDPDQQRRRIMEEVRLSTVILVCASFGVLAFVSGSAENIWRKVKLAGIGAVHMLLSKDKKFKPEVCL 228
            GQQLQGLVPIDPDQQRRR+M EVRLSTVILVCA FGVLAFVSGSAENIWRKVKLAGIGAVHMLLSKDKKFKPEVCL
Sbjct:  115 GQQLQGLVPIDPDQQRRRVMSEVRLSTVILVCAGFGVLAFVSGSAENIWRKVKLAGIGAVHMLLSKDKKFKPEVCL 190
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BLAST of mRNA_Ecto-sp13_S_contig14371.3369.1 vs. uniprot
Match: D7FM29_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FM29_ECTSI)

HSP 1 Score: 138 bits (348), Expect = 1.070e-36
Identity = 69/74 (93.24%), Postives = 70/74 (94.59%), Query Frame = 1 
Query:    1 GQQLQGLVPIDPDQQRRRIMEEVRLSTVILVCASFGVLAFVSGSAENIWRKVKLAGIGAVHMLLSKDKKFKPEV 222
            GQQLQGLVPIDPDQQ R IM EVRLSTVILVCA FGVLAF+SGSAENIWRKVKLAGIGAVHMLLSKDKKFKPEV
Sbjct:  144 GQQLQGLVPIDPDQQGRHIMSEVRLSTVILVCAGFGVLAFISGSAENIWRKVKLAGIGAVHMLLSKDKKFKPEV 217
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig14371.3369.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5L7M5_9PHAE2.990e-4396.05Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FM29_ECTSI1.070e-3693.24Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig14371contigEcto-sp13_S_contig14371:2076..2378 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score138.7
Seed ortholog evalue1.5e-30
Seed eggNOG ortholog2880.D7FM29
Model size303
Hectar predicted targeting categorysignal anchor
Exons1
EggNOG OGs2ASAB@1,2RZPE@2759
Ec32 ortholog descriptionHistidine phosphatase superfamily
Ec32 orthologEc-01_010450.1
Cds size303
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462767.4862976-CDS-Ecto-sp13_S_contig14371:2075..23781681462767.4862976-CDS-Ecto-sp13_S_contig14371:2075..2378Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14371 2076..2378 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig14371.3369.1prot_Ecto-sp13_S_contig14371.3369.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig14371 2076..2378 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig14371.3369.1

>prot_Ecto-sp13_S_contig14371.3369.1 ID=prot_Ecto-sp13_S_contig14371.3369.1|Name=mRNA_Ecto-sp13_S_contig14371.3369.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=101bp
GQQLQGLVPIDPDQQRRRIMEEVRLSTVILVCASFGVLAFVSGSAENIWR
KVKLAGIGAVHMLLSKDKKFKPEVCLSRIFERDTFGASLRVRETAVVCWY
E
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mRNA from alignment at Ecto-sp13_S_contig14371:2076..2378-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig14371.3369.1 ID=mRNA_Ecto-sp13_S_contig14371.3369.1|Name=mRNA_Ecto-sp13_S_contig14371.3369.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=303bp|location=Sequence derived from alignment at Ecto-sp13_S_contig14371:2076..2378- (Ectocarpus species13 EcNAP12_S_4_19m)
GGACAGCAGTTACAAGGCTTGGTGCCGATAGACCCTGATCAGCAGCGTCG
TCGTATCATGGAGGAGGTCAGGCTTTCGACGGTGATCCTGGTGTGCGCCA
GTTTCGGCGTCCTTGCCTTCGTCTCGGGCTCCGCCGAGAACATCTGGCGG
AAGGTCAAGCTGGCCGGCATTGGCGCGGTCCACATGCTGCTGTCAAAGGA
CAAGAAGTTCAAGCCCGAGGTGTGCCTCTCGAGGATTTTTGAAAGAGATA
CGTTTGGAGCCTCATTGAGGGTCCGAGAGACAGCAGTGGTCTGCTGGTAT
GAA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig14371:2076..2378-

>mRNA_Ecto-sp13_S_contig14371.3369.1 ID=mRNA_Ecto-sp13_S_contig14371.3369.1|Name=mRNA_Ecto-sp13_S_contig14371.3369.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=303bp|location=Sequence derived from alignment at Ecto-sp13_S_contig14371:2076..2378- (Ectocarpus species13 EcNAP12_S_4_19m)
GGACAGCAGTTACAAGGCTTGGTGCCGATAGACCCTGATCAGCAGCGTCG
TCGTATCATGGAGGAGGTCAGGCTTTCGACGGTGATCCTGGTGTGCGCCA
GTTTCGGCGTCCTTGCCTTCGTCTCGGGCTCCGCCGAGAACATCTGGCGG
AAGGTCAAGCTGGCCGGCATTGGCGCGGTCCACATGCTGCTGTCAAAGGA
CAAGAAGTTCAAGCCCGAGGTGTGCCTCTCGAGGATTTTTGAAAGAGATA
CGTTTGGAGCCTCATTGAGGGTCCGAGAGACAGCAGTGGTCTGCTGGTAT
GAA
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