mRNA_Ecto-sp13_S_contig10338.334.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig10338.334.1
Unique NamemRNA_Ecto-sp13_S_contig10338.334.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig10338.334.1 vs. uniprot
Match: D8LPV7_ECTSI (PX domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LPV7_ECTSI)

HSP 1 Score: 208 bits (530), Expect = 3.350e-65
Identity = 121/128 (94.53%), Postives = 121/128 (94.53%), Query Frame = 1 
Query:    1 SCIIDGVVMPELNDTVGDTGDDEGVPLPGEVFIDSIEPAKDRFGTEFLEFRVVTLRGTRRRDXXXXXXXXXXXXXXXXXGCYHAVVWRRFSAFRSLHSDVTAMLWGSHLLDSLPPLPGKPKCINPLVN 384
            SCIIDGVVMPELNDTVGDTGDDEGVPLPGEVFIDSIEPAKDRFGTEFLEFRVVTLRGTRRRD   XXXXXXXXXXXXX GCYHAVVWRRFSAFRSLHSDVTAMLWGSHLLDSLPPLP K  CINPLVN
Sbjct:  101 SCIIDGVVMPELNDTVGDTGDDEGVPLPGEVFIDSIEPAKDRFGTEFLEFRVVTLRGTRRRDSCGXXXXXXXXXXXXX-GCYHAVVWRRFSAFRSLHSDVTAMLWGSHLLDSLPPLPAK--CINPLVN 225
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig10338.334.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LPV7_ECTSI3.350e-6594.53PX domain-containing protein n=2 Tax=Ectocarpus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig10338contigEcto-sp13_S_contig10338:3..1740 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score194.9
Seed ortholog evalue2.2e-47
Seed eggNOG ortholog2880.D8LPV7
Model size384
Hectar predicted targeting categoryother localisation
Exons3
EggNOG free text desc.PX domain
EggNOG OGs2D5A9@1,2SXWF@2759
Ec32 ortholog descriptionPhox homologous domain
Ec32 orthologEc-02_004250.1
Cds size360
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462524.2489564-CDS-Ecto-sp13_S_contig10338:2..281681462524.2489564-CDS-Ecto-sp13_S_contig10338:2..28Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10338 3..28 -
1681462524.2708027-CDS-Ecto-sp13_S_contig10338:645..8781681462524.2708027-CDS-Ecto-sp13_S_contig10338:645..878Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10338 646..878 -
1681462524.2790842-CDS-Ecto-sp13_S_contig10338:1615..17161681462524.2790842-CDS-Ecto-sp13_S_contig10338:1615..1716Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10338 1616..1716 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462524.2866938-UTR-Ecto-sp13_S_contig10338:1716..17401681462524.2866938-UTR-Ecto-sp13_S_contig10338:1716..1740Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig10338 1717..1740 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig10338.334.1prot_Ecto-sp13_S_contig10338.334.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig10338 3..1716 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig10338.334.1

>prot_Ecto-sp13_S_contig10338.334.1 ID=prot_Ecto-sp13_S_contig10338.334.1|Name=mRNA_Ecto-sp13_S_contig10338.334.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=120bp
MPELNDTVGDTGDDEGVPLPGEVFIDSIEPAKDRFGTEFLEFRVVTLRGT
RRRDSSGAGGGGAGKRVDGGGGCYHAVVWRRFSAFRSLHSDVTAMLWGSH
LLDSLPPLPGKPKCINPLVN
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mRNA from alignment at Ecto-sp13_S_contig10338:3..1740-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig10338.334.1 ID=mRNA_Ecto-sp13_S_contig10338.334.1|Name=mRNA_Ecto-sp13_S_contig10338.334.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1738bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10338:3..1740- (Ectocarpus species13 EcNAP12_S_4_19m)
AGCTGTATCATCGACGGCGTCGTCATGCCGGAGCTCAACGACACTGTCGG
CGACACGGGGGATGATGAGGGTGTTCCTCTGCCGGGGGAGGTCTTCATCG
ACAGCATCGAGCCTGCCAAGGATAGGTACAAGTACTGCTGTACCTCTTTT
TGCGGCAACGACGACGATTGCCTCCGGACATGACGCTTAGAAGCATTCTG
GTTCATTAACTTTTTCTGTACGACGCACGTGTACATGTTTTGGTTCATAG
CGCTTCTCTGTACTACGCGCTTTTGGTTCACTAACGTTTGCTGCTGCGCC
CCCTCACGCGCGAGTTGCTGGGAGCCGTGTGTGTGTGTGTGCGTGCCGTT
CACTCCTTCACGTGCCGGTACAAGCATGTTGGGGAGCGTCGTGGAATGTC
CGACGATTCTGAAACGTGTGAGATTTTTGCCCCCCTCCGCCTGTTCGCGT
CGAATGTACCGTAGGTTGCATAGTACATCACGTGAGCGCCTGACGCGGCT
CGTCAAGCTTGTTCTCCCCCCCTCTCCCCGTCCTCTCCATCGTTTTGGGG
TAGGCCTTCCCTTCCCGCTTGTCACGCCTTTCTTGGACAAGTTCGTGTGT
TCCGATTCCAATGCGCTTGATACCCGACAGATCTGAGTTCGCCTATTTAG
TCTACTCACGTGTGGCGCCGTTTCACGTTGTTGCCATCTCTGAACCACCG
CTGTACCACGCGACTAACGCAGAGGCAAGGACCGGCCGCAACTTCTGTGC
CACGGATGGCGGCGCTCAACAAACAATCAAATACGCGTACCCCCCCGCCC
CCCCCCCCGGGACCGCATCATTCACGATTCCGTGGGGCCTCGCACTGTCT
CGACCGAACCAGGTTCGGCACAGAGTTTCTGGAGTTTCGAGTGGTGACTC
TTCGCGGCACGAGACGAAGAGATAGCAGCGGCGCCGGAGGCGGCGGGGCG
GGTAAGAGGGTTGACGGGGGCGGCGGGTGTTACCACGCGGTCGTGTGGAG
GCGTTTCTCGGCATTCCGATCGCTGCACAGCGATGTGACGGCCATGCTGT
GGGGGTCTCACCTGCTGGACAGCCTGCCCCCTCTGCCAGGCAAGCGTCGC
CCCTCCGCGAACGAAATTGTTTGTGGTGTTGGAGAAAGTACGATAGGTTT
TATTATTCTCCTCTACTTTGGTGCCTACGTAGCAAGCGTTTCTCCTATCT
TGTCACTTGCTCTATGTTCTACACGTACGGTTGTCGAAAGTGCAAGTGGT
TCTGGAGGGGAGATTGTACATGGATGTCTGGCGTTGGACAGCAAAGTCTT
CGCCCTGTTCGTCATCAAGAATTGAACTCAATATTTCTCTGCGTCAAGAA
CAGCGGCCTCTTGTTTTGCGTCTGCTGTCCGGGCCTTGCATCCTTCACGT
GTGGATTTGCCTCTTCTTCCAAACAGTATCCATCTCCATCCAACCTTCCG
TCCCCGCTCCCCCTCCCCTCTCTCACGACAGTCTGCTTGCCAAGAGTGTC
TCGATGACCATGCTTCTCCCCCTCCGATATCCCTTCTTCTACTTGTCCTG
ATTTCCTAGGTGGCTGATTTCCTAGAAACAGTTCACTCTCGCGTGCGCAT
GACAGAAAGTGTGGTGACGGGTCGTTCTTCTCGTGTCTGACTTGTCTCCC
CTCCGGTCCGCGTGTCTTGACGTCCTTATCTCGCCGCGTTCCTTCAATGC
CGTCGCCAACAGCGAAGTGCATCAACCCGTTGGTCAAC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig10338:3..1740-

>mRNA_Ecto-sp13_S_contig10338.334.1 ID=mRNA_Ecto-sp13_S_contig10338.334.1|Name=mRNA_Ecto-sp13_S_contig10338.334.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=360bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10338:3..1740- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCCGGAGCTCAACGACACTGTCGGCGACACGGGGGATGATGAGGGTGT
TCCTCTGCCGGGGGAGGTCTTCATCGACAGCATCGAGCCTGCCAAGGATA
GGTTCGGCACAGAGTTTCTGGAGTTTCGAGTGGTGACTCTTCGCGGCACG
AGACGAAGAGATAGCAGCGGCGCCGGAGGCGGCGGGGCGGGTAAGAGGGT
TGACGGGGGCGGCGGGTGTTACCACGCGGTCGTGTGGAGGCGTTTCTCGG
CATTCCGATCGCTGCACAGCGATGTGACGGCCATGCTGTGGGGGTCTCAC
CTGCTGGACAGCCTGCCCCCTCTGCCAGGCAAGCCGAAGTGCATCAACCC
GTTGGTCAAC
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