mRNA_Ecto-sp13_S_contig14299.3334.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig14299.3334.1
Unique NamemRNA_Ecto-sp13_S_contig14299.3334.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig14299.3334.1 vs. uniprot
Match: D7FXW0_ECTSI (PPR_long domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXW0_ECTSI)

HSP 1 Score: 219 bits (558), Expect = 9.290e-61
Identity = 169/198 (85.35%), Postives = 171/198 (86.36%), Query Frame = 1 
Query:    1 SLMSALSPRGAAGADIVLELFETLAKSGLKPNSITYVSAIRAYGDKGDWKRAEQMLVGMQKEHXXXXXXXXXXXXXXXXXXXXXXXXXLETLDEMRECGLSADPVXXXXXXXXXXXXXXXXXXXXXXSKLVSEKPPMRSLMWGYNAAISALGKAKQMEGIKDLLATMKASGLSPDEYTYAAMMRASGIDGSWEESWSM 594
            SLMSALSPRG AGAD                         RAYGDKGDW+RAEQMLVGMQKEHXXXXXXXXXXXXXXXXXXXXXXXXXLETLDEMRECGLSADPVXXXXXXXXXXXXXXXXXXXXXXSKLVSEKPPMRSLMWGYNAAISALGKAKQMEGIKDL+ATMKASGL PDEYTYAAMMRASGIDGSWEESWSM
Sbjct:  380 SLMSALSPRGLAGADXXXXXXXXXXXXXXXXXXXXXXXXXRAYGDKGDWERAEQMLVGMQKEHXXXXXXXXXXXXXXXXXXXXXXXXXLETLDEMRECGLSADPVXXXXXXXXXXXXXXXXXXXXXXSKLVSEKPPMRSLMWGYNAAISALGKAKQMEGIKDLVATMKASGLKPDEYTYAAMMRASGIDGSWEESWSM 577
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BLAST of mRNA_Ecto-sp13_S_contig14299.3334.1 vs. uniprot
Match: A0A6H5KVR3_9PHAE (PPR_long domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVR3_9PHAE)

HSP 1 Score: 211 bits (538), Expect = 7.000e-58
Identity = 163/198 (82.32%), Postives = 167/198 (84.34%), Query Frame = 1 
Query:    1 SLMSALSPRGAAGADIVLELFETLAKSGLKPNSITYVSAIRAYGDKGDWKRAEQMLVGMQKEHXXXXXXXXXXXXXXXXXXXXXXXXXLETLDEMRECGLSADPVXXXXXXXXXXXXXXXXXXXXXXSKLVSEKPPMRSLMWGYNAAISALGKAKQMEGIKDLLATMKASGLSPDEYTYAAMMRASGIDGSWEESWSM 594
            SLMSALSPRGAAGA                          RAYGDKGDWKRAEQMLVGMQK+H XXXXXXXXXXXXXXXXXXXXXXXXLETLD+MRECGLSADPV XXXXXXXXXXXXXXXXXXXXX KLVSEKPP RSLMWGYNAAISALGKAKQMEGIKDLLATMKASGL PDEYTYAAMMRASGI+GSWEESW+M
Sbjct:  449 SLMSALSPRGAAGAXXXXXXXXXXXXXXXXXXXXXXXXXXRAYGDKGDWKRAEQMLVGMQKDHGXXXXXXXXXXXXXXXXXXXXXXXXLETLDKMRECGLSADPVVXXXXXXXXXXXXXXXXXXXXXXKLVSEKPPKRSLMWGYNAAISALGKAKQMEGIKDLLATMKASGLKPDEYTYAAMMRASGIEGSWEESWTM 646
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig14299.3334.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FXW0_ECTSI9.290e-6185.35PPR_long domain-containing protein n=1 Tax=Ectocar... [more]
A0A6H5KVR3_9PHAE7.000e-5882.32PPR_long domain-containing protein n=1 Tax=Ectocar... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig14299contigEcto-sp13_S_contig14299:668..3988 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score217.6
Seed ortholog evalue8.9e-54
Seed eggNOG ortholog2880.D7FXW0
Model size1032
Hectar predicted targeting categoryother localisation
Exons6
EggNOG free text desc.endonuclease activity
EggNOG OGsKOG4197@1,KOG4197@2759
Cds size1026
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig14299.3334.1prot_Ecto-sp13_S_contig14299.3334.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig14299 674..3988 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462764.4016798-UTR-Ecto-sp13_S_contig14299:667..6731681462764.4016798-UTR-Ecto-sp13_S_contig14299:667..673Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig14299 668..673 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462764.4155118-CDS-Ecto-sp13_S_contig14299:673..8291681462764.4155118-CDS-Ecto-sp13_S_contig14299:673..829Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14299 674..829 +
1681462764.4332716-CDS-Ecto-sp13_S_contig14299:1316..15021681462764.4332716-CDS-Ecto-sp13_S_contig14299:1316..1502Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14299 1317..1502 +
1681462764.4411392-CDS-Ecto-sp13_S_contig14299:2017..21801681462764.4411392-CDS-Ecto-sp13_S_contig14299:2017..2180Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14299 2018..2180 +
1681462764.452819-CDS-Ecto-sp13_S_contig14299:2662..28291681462764.452819-CDS-Ecto-sp13_S_contig14299:2662..2829Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14299 2663..2829 +
1681462764.462952-CDS-Ecto-sp13_S_contig14299:3156..33451681462764.462952-CDS-Ecto-sp13_S_contig14299:3156..3345Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14299 3157..3345 +
1681462764.4734542-CDS-Ecto-sp13_S_contig14299:3823..39881681462764.4734542-CDS-Ecto-sp13_S_contig14299:3823..3988Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14299 3824..3988 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig14299.3334.1

>prot_Ecto-sp13_S_contig14299.3334.1 ID=prot_Ecto-sp13_S_contig14299.3334.1|Name=mRNA_Ecto-sp13_S_contig14299.3334.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=342bp
MSALSPRGAAGADIVLELFETLAKSGLKPNSITYVSAIRAYGDKGDWKRA
EQMLVGMQKEHGVEPNRFCYSAVVKALANGGQWKRALETLDEMRECGLSA
DPVVYTAAIGACEKFGQWEKALDTLSKLVSEKPPMRSLMWGYNAAISALG
KAKQMEGIKDLLATMKASGLSPDEYTYAAMMRASGIDGSWEESWSMLLEM
EQAGIRPNRVVYNTLIASLLKGEQIEKADEILNRMREGGVPPDVTTYTTI
MSGCKRESDWRRAEALLSEMESFGIKPNCRTLTAVLKVYGDAGEVERALA
LFEQYDASGMVMDVICFNTLMGPVLKKDDPETVLEVTPTVEA
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mRNA from alignment at Ecto-sp13_S_contig14299:668..3988+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig14299.3334.1 ID=mRNA_Ecto-sp13_S_contig14299.3334.1|Name=mRNA_Ecto-sp13_S_contig14299.3334.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3321bp|location=Sequence derived from alignment at Ecto-sp13_S_contig14299:668..3988+ (Ectocarpus species13 EcNAP12_S_4_19m)
TCGCTCATGTCGGCGTTGAGCCCCAGAGGGGCAGCGGGCGCCGACATTGT
GCTAGAGCTCTTCGAGACCCTGGCGAAGTCGGGGCTCAAGCCCAACAGCA
TTACGTACGTTTCGGCTATCCGTGCCTACGGGGACAAGGGCGACTGGAAA
AGGGCCGAACAGGTGTGGTGTGGTCGTGGCGTGTTGAGTATACTGTATTG
GTGTTCGTCCATACAACTACACTTGCGATGCACGTGAGGGTACAATTTGC
TGCGCGATTCAAATCGGTGTCCAGGATATGTCGAGGGTCCAAAGTTTAGC
GCTGCTGTTGATCGTGACCTTAACTCGGTTGCCTTGCACCTGTCCCTCTT
TGGTCGTAGCATGTGGTGTAGAATTTGGACGGGTATGCAGACTCCCTTTC
TCCCAAGATGGTAACGTGATCGATCCCTGGCCCAATCGCAAATCGATGTT
CGGATGAGGATGGCTGTGAATGTCGGAGGTGGTGCAGGGAGACAGGTGGT
TAATAAATAGTAAAGAGGACGGGACCATAAAGGGTGCTTTAAGGCTGACA
TCTCCACGCTGCCCTCCCTCCGCGCCCTTCCCCTTCCCCCTCCGACGTGT
GCTGGCGGGATGGGCAATCGCTCTTGCATGGTTCTTTCGCCTGATGTAGA
TGCTCGTGGGGATGCAGAAAGAACACGGTGTGGAGCCGAATCGCTTCTGC
TACTCGGCTGTGGTTAAGGCTCTCGCCAACGGCGGCCAATGGAAGAGAGC
ACTCGAGACTCTGGACGAGATGCGGGAGTGCGGGCTTTCCGCAGACCCGG
TGGTGTACACAGCCGCCATAGGGGCGTGCGAAAAGGTACAGTAGTATTGG
TGAAGGTCGAGATGAGTCACTGTTATTCCATTGCTTAGTTTTGTCCACCT
TAGTAAGACTAATAGACAATGGCACTTGAGAAAAGTGTTGCCACGAGGTG
TCAAAGGAGCACGTGATTTTTTTGTTCACTTGCAATGTGTTATTTTGATT
GCACGCTGTGTTGAGAAAACTTATTGATGTGCTTGTGTCTGCGCGGCTCC
GAGCTGTCCCCAAGTTCCTGGCACGAGTTTTTGGCATCTCGCTGCGAAAG
GTTTGTTGGCTACTTGCAGCTGTGCTTCGGCGTCTGTTCGTCATCGAGTG
GATTTCCTTATTTCACTTTCGCAAAAAAAATCGGGAGGCATTTAATGCAG
TAGACAGGTCGCGTCCCGGTCCACCCTGTCATCCTCCAGTTCGGGTGATT
TAGCTCTGAAAAGATTATCAGCACTGTGATGGCATTCATGTAGACACGTC
TGTTTTCTACCTCCTACTCTCTATCTATCTATCCTTCTGTCTTTGTCCAG
TTCGGCCAGTGGGAGAAGGCTCTTGACACTCTGAGCAAGCTGGTCTCAGA
AAAGCCGCCCATGAGATCTCTCATGTGGGGCTACAACGCGGCCATCAGCG
CCCTTGGGAAGGCGAAGCAGATGGAGGGGATCAAAGACTTGCTCGCGACC
ATGAAGGCTAGCGGTGCGTCTCTTCCGTTTCACGCATCCCTTGCTTTCAC
AGAGCTTGACCCGGGTTGATTGCGCGGCAGAGGATTAGACGACATTTCGT
TTGTACTTGAATGACGTCGTTGGCGTTCCCGCTACGATAGGCAGCTGCCG
TTCCATCCCGTGACCCGCTTGGAAAGGCAAGATAGATCAAGAGTACGACG
TATAATGTGGCCGTCCACCATGACACACCAAAGTGTTTGCATGTATACAA
CTTCTCGTGCTCGCACTGACAGACTGTGTTGTTGGCCGTGCTAGTGACTC
TCACTTTCACTCTCGCTTTCATTCTCACGCGCACCTTCACGCTCATTTTC
ACTTTTACTGTCGCTCTCATTCTCATTCTCATTCTCATTCTCATTCTCAC
TCTCACCCTCACTCTTATTGTCAATCTCACTCTCGTGCTCTCACCCTTAC
TCTTAACTCTCGATCACTCCCAAACTCGCACGCACACTTGCTCAGGGCTG
TCGCCGGACGAATATACGTACGCGGCAATGATGCGAGCGAGTGGCATAGA
CGGCTCTTGGGAGGAGTCTTGGTCCATGCTGCTAGAGATGGAGCAGGCGG
GGATCCGGCCTAACCGAGTCGTGTACAACACTCTCATCGCCTCCCTGTTG
AAGGGCGAGCAGGTGCGGGTGACGGGGGTAGCAAGAGAGGGAGGTGGCGT
GAAAAATGTATCTATTTGTATATTTTTATCTGTTGGGAAACCTCGCGACA
CGCCCTTGCGCAAGTGGTCGTAAGGGGTACACGCACCCGTCTCTAGATCA
CTGGTGCGTGCTCATCTATCCTCGAAGACGATTCCTGTCCTCATTCTTTT
GGATGGTGTGCTTTGTCTGCGTCTGGAAAGCTGCCATTTATCGTTGCGTA
GAAGCGAAGCGGAACGTCAGTGACGGGTTGAAGTGTTTTGGACGCCTCCG
TTCGTGCGGTATTCGATGCCACCGTTCATTATTCCGCAGATCGAGAAGGC
GGACGAGATTCTGAATCGCATGCGGGAAGGAGGAGTCCCTCCGGACGTGA
CAACCTACACTACCATCATGTCCGGGTGCAAGAGGGAGTCGGACTGGAGA
AGGGCTGAGGCTCTGCTCTCGGAAATGGAGTCGTTTGGAATCAAACCCAA
CTGCAGGACTTTGACGGCTGTGCTAAAGGTGTGCGTCTTTTCTGGGTGGA
AGGTGTCTGTGCGTGTTCGCGATAAACGGCTGGTTGGTGAAGATGATGAT
CTTGGGTGTGCCCTCTCCCGCTGTCATTCGCCTTGGTGGGATGGTAGGAT
GCCTCTCCCTCCTCATCGCCGAAGTACCCATTTGAGAGGCGTCTCATCAT
CGTATCGACCAAGGTGTACGACATTGATTTACGTCCTTTCATTGCATCAC
GCCACACCGCACCTCCTTCCTTCCCTGCCTTTCCCTCGCATTCGTGATGA
TCATCATCCAAGCTCGACTCACCCCCCACCGGCTTTCATTGAACCAAGCA
ACTAGCTACAAGACAGTGTGCGATGGTCTTCTCTTGAGATGTCGCCCTAG
ACAACGCCACCCCAACGCATTGTGCGAGTTACTCCTTACACCTGCGCAGC
CTGATGAGATCGGTTTGGTAGTCCCTACATGCACTGATTGTACCGGTTCG
GGACAGGTCTACGGAGATGCCGGCGAGGTGGAGCGAGCACTGGCTCTGTT
CGAGCAATACGATGCCAGTGGCATGGTGATGGACGTTATTTGCTTCAACA
CTCTGATGGGGCCTGTGCTCAAGAAGGACGACCCGGAAACCGTTTTAGAG
GTGACACCAACTGTTGAAGCG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig14299:668..3988+

>mRNA_Ecto-sp13_S_contig14299.3334.1 ID=mRNA_Ecto-sp13_S_contig14299.3334.1|Name=mRNA_Ecto-sp13_S_contig14299.3334.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1026bp|location=Sequence derived from alignment at Ecto-sp13_S_contig14299:668..3988+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTCGGCGTTGAGCCCCAGAGGGGCAGCGGGCGCCGACATTGTGCTAGA
GCTCTTCGAGACCCTGGCGAAGTCGGGGCTCAAGCCCAACAGCATTACGT
ACGTTTCGGCTATCCGTGCCTACGGGGACAAGGGCGACTGGAAAAGGGCC
GAACAGATGCTCGTGGGGATGCAGAAAGAACACGGTGTGGAGCCGAATCG
CTTCTGCTACTCGGCTGTGGTTAAGGCTCTCGCCAACGGCGGCCAATGGA
AGAGAGCACTCGAGACTCTGGACGAGATGCGGGAGTGCGGGCTTTCCGCA
GACCCGGTGGTGTACACAGCCGCCATAGGGGCGTGCGAAAAGTTCGGCCA
GTGGGAGAAGGCTCTTGACACTCTGAGCAAGCTGGTCTCAGAAAAGCCGC
CCATGAGATCTCTCATGTGGGGCTACAACGCGGCCATCAGCGCCCTTGGG
AAGGCGAAGCAGATGGAGGGGATCAAAGACTTGCTCGCGACCATGAAGGC
TAGCGGGCTGTCGCCGGACGAATATACGTACGCGGCAATGATGCGAGCGA
GTGGCATAGACGGCTCTTGGGAGGAGTCTTGGTCCATGCTGCTAGAGATG
GAGCAGGCGGGGATCCGGCCTAACCGAGTCGTGTACAACACTCTCATCGC
CTCCCTGTTGAAGGGCGAGCAGATCGAGAAGGCGGACGAGATTCTGAATC
GCATGCGGGAAGGAGGAGTCCCTCCGGACGTGACAACCTACACTACCATC
ATGTCCGGGTGCAAGAGGGAGTCGGACTGGAGAAGGGCTGAGGCTCTGCT
CTCGGAAATGGAGTCGTTTGGAATCAAACCCAACTGCAGGACTTTGACGG
CTGTGCTAAAGGTCTACGGAGATGCCGGCGAGGTGGAGCGAGCACTGGCT
CTGTTCGAGCAATACGATGCCAGTGGCATGGTGATGGACGTTATTTGCTT
CAACACTCTGATGGGGCCTGTGCTCAAGAAGGACGACCCGGAAACCGTTT
TAGAGGTGACACCAACTGTTGAAGCG
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