mRNA_Ecto-sp13_S_contig1421.3269.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig1421.3269.1
Unique NamemRNA_Ecto-sp13_S_contig1421.3269.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
[Close]
BLAST of mRNA_Ecto-sp13_S_contig1421.3269.1 vs. uniprot
Match: D7FKI3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FKI3_ECTSI)

HSP 1 Score: 318 bits (816), Expect = 7.920e-109
Identity = 184/204 (90.20%), Postives = 185/204 (90.69%), Query Frame = 1 
Query:    1 MTPPTPPVQLTGHAARAVISTERRVQIWDQFYISFKETIPPNQWCTRQELVTAACSGTTGVKFTVDELTEVIRGRKHKREAGIDSQKVDGEWLYRCRNGPLRPRAKSPAATAXXXXXXXXXXXXXR-----KRASPSGGVDPMTTRLRSGAKKARPSPRARSGNSDRNGQKGGGAGLGGGLFRFGGGGVGAADEEGGGWSCAVM 597
            MTPPTPPVQLTGHAARAVISTERRVQIWDQFYISFKETIPPNQWCTRQELVTAACSGTTGVKFTVDELTEVIRGRKHKREAGIDSQKVDGEWLY        P AK+P    XXXXXXXXXXXXX      KRASPSGGVDPMTTRLRSGAKKARPSPRARSGNSDRNGQKGGGAGLGGGLFRFGGGGVGAADEEGGGWSCAVM
Sbjct:    1 MTPPTPPVQLTGHAARAVISTERRVQIWDQFYISFKETIPPNQWCTRQELVTAACSGTTGVKFTVDELTEVIRGRKHKREAGIDSQKVDGEWLY-------SPAAKTPPGPGXXXXXXXXXXXXXXXXXXXKRASPSGGVDPMTTRLRSGAKKARPSPRARSGNSDRNGQKGGGAGLGGGLFRFGGGGVGAADEEGGGWSCAVM 197
[Close]
BLAST of mRNA_Ecto-sp13_S_contig1421.3269.1 vs. uniprot
Match: A0A6H5KU79_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KU79_9PHAE)

HSP 1 Score: 110 bits (275), Expect = 1.720e-28
Identity = 60/62 (96.77%), Postives = 61/62 (98.39%), Query Frame = 1 
Query:  412 MTTRLRSGAKKARPSPRARSGNSDRNGQKGGGAGLGGGLFRFGGGGVGAADEEGGGWSCAVM 597
            MTTRLRSGAKKARPS RARSGNSDRNGQKGGG+GLGGGLFRFGGGGVGAADEEGGGWSCAVM
Sbjct:    1 MTTRLRSGAKKARPSSRARSGNSDRNGQKGGGSGLGGGLFRFGGGGVGAADEEGGGWSCAVM 62
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1421.3269.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FKI3_ECTSI7.920e-10990.20Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KU79_9PHAE1.720e-2896.77Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig1421contigEcto-sp13_S_contig1421:7131..9535 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size600
Hectar predicted targeting categoryother localisation
Exons3
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-12_001960.2
Cds size600
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462759.5592391-CDS-Ecto-sp13_S_contig1421:7130..74421681462759.5592391-CDS-Ecto-sp13_S_contig1421:7130..7442Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1421 7131..7442 -
1681462759.577546-CDS-Ecto-sp13_S_contig1421:8611..88721681462759.577546-CDS-Ecto-sp13_S_contig1421:8611..8872Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1421 8612..8872 -
1681462759.5878513-CDS-Ecto-sp13_S_contig1421:9508..95351681462759.5878513-CDS-Ecto-sp13_S_contig1421:9508..9535Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1421 9509..9535 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig1421.3269.1prot_Ecto-sp13_S_contig1421.3269.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig1421 7131..9535 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig1421.3269.1

>prot_Ecto-sp13_S_contig1421.3269.1 ID=prot_Ecto-sp13_S_contig1421.3269.1|Name=mRNA_Ecto-sp13_S_contig1421.3269.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=200bp
MTPPTPPVQLTGHAARAVISTERRVQIWDQFYISFKETIPPNQWCTRQEL
VTAACSGTTGVKFTVDELTEVIRGRKHKREAGIDSQKVDGEWLYRCRNGP
LRPRAKSPAATAASAAAGGSAASASRKRASPSGGVDPMTTRLRSGAKKAR
PSPRARSGNSDRNGQKGGGAGLGGGLFRFGGGGVGAADEEGGGWSCAVM*
back to top

mRNA from alignment at Ecto-sp13_S_contig1421:7131..9535-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig1421.3269.1 ID=mRNA_Ecto-sp13_S_contig1421.3269.1|Name=mRNA_Ecto-sp13_S_contig1421.3269.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2405bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1421:7131..9535- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGACGCCGCCAACTCCTCCAGTCCAGGTGATGAAGAGAAGGGCCGGAAG
CCCCCATGCTTCGTGACCCAACTCTCTTGTCTGCCAAGAATGTTGTGTGA
GGTTGTTGTTTGGGGGCACAGCGCAGGATCGCACTGAAGATCCACTGCTC
CCTGACTTTTGGCGCTATCCCGCCCGACAGCTTGATTGAGCGAGGCGCGC
GTCGTTCGCCCTTTACGCTCACCAGCAGATCCAGGGATAGTTGGTGCCTT
GGTGTGTTGTCGTCAAACTTCCGGCAGTTTTTTCAAAATCCCCCCGCCTT
TTTTTTTTCATACACGACGTTGCAGAGATAGGTCACGCACGGAACGCGGG
GTGGTTGGCCGCCGACTGCCGGTGCGCCACTATTTGCCGATGCCACCGAA
CGCCGACCGTCACACACAAAGAACGGCGGGTGTTGGGATCGACTCTTGTG
GCCGGTCGGATACCCCACGTTTGTTTCTGTAGAACGGTCGTCAAATACGA
CAACTACCACTGTGTCCCGTGGGACCCCGACCTTGTTCCGGCGGGCGAAT
CGCTTCGGTTGGAGTCGTCGACAGTTCGCTTAAGCAGGCGGGGCGACAAT
TGATAAGACTAACGATCATCATGCTTTTCCCCTCTCCCCTTTTTTGCGCC
GCCGTTTGCGAAGCTAACCGGGCATGCCGCGCGAGCCGTTATCTCGACGG
AGCGAAGGGTCCAGATATGGGACCAGTTTTACATCAGCTTCAAGGAGACC
ATTCCGCCTAACCAGTGGTGCACGAGACAGGAGCTGGTCACGGCGGCGTG
CAGCGGCACAACCGGGGTCAAGTTTACGGTCGACGAGCTGACCGAGGTCA
TCAGAGGGCGGAAACACAAGAGGGAAGCCGGCATCGACAGCCAAAAGGTC
GACGGGGAATGGCTCTACAGGTGTGTGCGTGTAGGTAGGGTTCTCTGATG
TGTTTTCTCTCTTTTTTGTTTACACCCAGGGATCTTGAAGACCTGGAACT
ACTCCTACACAGCTGCTTTTCCACTCTGCTCCTCGCAATGCCATCAACGA
TAACTTCACCACTGTTAGTTCGGTTTCCAGCGCTCCCCCGTAGGCGAGCG
CGGTCACAATTTGCTCTCTTGTTGCCAGATATATTCTTCGGTTAGATGTT
CCAGTTCGCCTCAAAGTAAAGGTAACGATTGTAACTGATGTCCTGTATCC
ATACATGCGCTGTGTGACACCCGCAGATTTTTGCCCAGTACCTGCGACGT
GCTTCGCACTCAAACGCCTATCCCAGTCCACCGTAGCACCTTAGGATCGA
ACGCCGCCTATGGTACCCATCACGTTCCATCCGGTTCTGTGCTGTCCGTG
CTCTTGAACCCTGTCGGGGTGACTTTCCGGACTAAAAAATCAGAATTAAT
TAGGTTAAGTTCCAAATTTACGGCGGCCGTCTCCCCGCTCTCACCTGAGT
GTCACCATGACTCTACCCGGTTGGCGTGGAGACGTTTCTCTCTTGCATAA
TCGCTCTTTGGAGGATCACTCGCGCTTAAGAACAGATTTGGAGGTCGCCC
CGCGGTGTTCTTGATGATCCTGCTGTTCCATGGTACAGAGGTTCCATCGG
AAAAGGCAACCAATCAATCCACAACTAACGCACAGAATGACAAGAGCGGC
GATTTTGAGCCCATTTTATCCTCGTGTAAGCTGAAAACCTTTTCATCAAC
CCGCCAGATCATATTTTCGTTCTTTCTCGCTCTCGTGTTGTGTCTGAAAA
CACCAAATAAATCTCACGCCGGAAGTTAAGTATTACACCACTAAACGTTG
CATGTCTTATTTTCGATAAGGGGTTGGGAAGCCACCCTCTCCCTCTCCGG
CTGTCGTGGCCGTCAACCTTACCAAGGCAAGCAACAAACGAATCCGCTCT
TTCCACGACCAGCGTCCCGACGAGTGCCCTCTCCCTCCCCCCCCCTCCCC
CACCTCGAAGGTTCGTCCCGCCGAGCGGCGCCGCGGCGGCCAACCCTTCT
TCCACGTCTCGTCCACCTCCGCCGGCGGCGGCCAAGCGCCTCGCCCCTTC
GTCGACCGTCAAACCCAAGCCCAAGCCCAAGGCCACACCGAAGCGCAACG
GGCCCTTGCGGCCCCGCGCTAAGAGCCCGGCGGCGACGGCGGCATCTGCG
GCGGCGGGGGGGTCGGCGGCGTCGGCGTCTCGCAAGCGCGCCTCTCCCTC
GGGAGGAGTAGATCCCATGACCACGCGCCTTCGATCGGGAGCTAAGAAGG
CTCGCCCGTCGCCGAGGGCCCGCAGCGGGAACTCCGACAGGAACGGCCAG
AAGGGCGGCGGCGCGGGGTTGGGGGGCGGTTTGTTCAGATTCGGAGGCGG
CGGAGTCGGGGCGGCGGACGAGGAAGGGGGCGGCTGGAGCTGCGCGGTGA
TGTAA
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1421:7131..9535-

>mRNA_Ecto-sp13_S_contig1421.3269.1 ID=mRNA_Ecto-sp13_S_contig1421.3269.1|Name=mRNA_Ecto-sp13_S_contig1421.3269.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=600bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1421:7131..9535- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGACGCCGCCAACTCCTCCAGTCCAGCTAACCGGGCATGCCGCGCGAGC
CGTTATCTCGACGGAGCGAAGGGTCCAGATATGGGACCAGTTTTACATCA
GCTTCAAGGAGACCATTCCGCCTAACCAGTGGTGCACGAGACAGGAGCTG
GTCACGGCGGCGTGCAGCGGCACAACCGGGGTCAAGTTTACGGTCGACGA
GCTGACCGAGGTCATCAGAGGGCGGAAACACAAGAGGGAAGCCGGCATCG
ACAGCCAAAAGGTCGACGGGGAATGGCTCTACAGGTGTCGCAACGGGCCC
TTGCGGCCCCGCGCTAAGAGCCCGGCGGCGACGGCGGCATCTGCGGCGGC
GGGGGGGTCGGCGGCGTCGGCGTCTCGCAAGCGCGCCTCTCCCTCGGGAG
GAGTAGATCCCATGACCACGCGCCTTCGATCGGGAGCTAAGAAGGCTCGC
CCGTCGCCGAGGGCCCGCAGCGGGAACTCCGACAGGAACGGCCAGAAGGG
CGGCGGCGCGGGGTTGGGGGGCGGTTTGTTCAGATTCGGAGGCGGCGGAG
TCGGGGCGGCGGACGAGGAAGGGGGCGGCTGGAGCTGCGCGGTGATGTAA
back to top