mRNA_Ecto-sp13_S_contig14190.3253.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig14190.3253.1
Unique NamemRNA_Ecto-sp13_S_contig14190.3253.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig14190.3253.1 vs. uniprot
Match: D8LSH3_ECTSI (Hypothetical leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSH3_ECTSI)

HSP 1 Score: 313 bits (801), Expect = 8.510e-89
Identity = 490/726 (67.49%), Postives = 504/726 (69.42%), Query Frame = 1
Query:   43 FGNDDGSGRPRSMERLLKAAEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVXXXXGSAIDGDLERGGSVEVLAKTPSMSNRGGSGAGFELPEKVVRAFGDGXXXXXXXXXXXXXXGQEVLSRRRKSRERARAMGMLAKGNXXXXXXXXGXXXXXXXXXXXXXXXXXXXXXXAVVDGGGERGSADSQMMLSTLLREAQAKEKAMLREIEEMRAREQTMRGELVNGLAGARKIYAQLKQGKQREQELRATNSILQAKIASSSSSSSYS-------------------------------TGEGERQAGRATAPRDPEKVPSSSKNGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAMTTPRGAVPFKPFATRPPTAXXXXXXXXXXXXXEMLVNGADDAQRQPAAAAAAGLGRHDGACGG--DVMASATLVKDKVGTVSDEPSSEV---AXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSRREIVEWERRVSQVLSIDNIPHHALDSTGDSLASPEDPDAAADTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNEKSNSKNDVPRGSPTEAGGGLGVSEGERAXXXXXXXXXXXXXXXXXXXXNESIGSKGRKSKGHRRRSGEGGGGRDRDGKERVSLELKKE 2112
            FGNDDGSGRPRSMERLLK   XXXXXXXXXXXXXXXXXXXXXXXXXXX            XXXXXVXXXX   IDGDLERGGSVEVLAKTPS+SN  G G GFELPEKVVRAFGDG              GQ+VLSRRRKSRERARAMGMLA   XXXXXXXX XXXXXXXXXXXXXXXXXX  XX        RGSADSQM+LSTLLREAQAKEKAMLRE+EEMRAREQTMRGELVNGLAGARKI+AQLKQGKQREQELRATNSILQAKIAS                                       T   +RQ G +  P       ++  +GA         XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX                     PRGAVPFKPFATRPPT XXXXXXXXXXXXX                                 D+MASATLVKDKVGTVSDEPSSEV   AXXXXXXXXXXXXXXXXXXXXX           SRREIVEWERRVSQVLSID+IP HALDSTGDSLASPEDP A A +     XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX                     LGV E E  XXXXXXXXXXXXXXXXX   NESIGSKGRKSKGHRRRSGEGG GRDRDGKERVS +LKKE
Sbjct:   75 FGNDDGSGRPRSMERLLKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEDESVAGDSLSSXXXXXVXXXXXXXIDGDLERGGSVEVLAKTPSLSN--GGGVGFELPEKVVRAFGDGGGAAPPGGD-----GQDVLSRRRKSRERARAMGMLAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGAXXXXXXXXXXRGSADSQMLLSTLLREAQAKEKAMLREMEEMRAREQTMRGELVNGLAGARKIFAQLKQGKQREQELRATNSILQAKIASXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAPTSGSDRQPGASMPPSYSSVTSATPFSGAAGTGAGTDGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXK--------------------PRGAVPFKPFATRPPTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDLMASATLVKDKVGTVSDEPSSEVPLAAXXXXXXXXXXXXXXXXXXXXXGSSGNPLQSQESRREIVEWERRVSQVLSIDSIPRHALDSTGDSLASPEDPAAVAGSGAAADXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX---------LGVREAEXXXXXXXXXXXXXXXXXXX---NESIGSKGRKSKGHRRRSGEGGXGRDRDGKERVSQDLKKE 761          
BLAST of mRNA_Ecto-sp13_S_contig14190.3253.1 vs. uniprot
Match: A0A6H5L8P8_9PHAE (Protein kinase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L8P8_9PHAE)

HSP 1 Score: 311 bits (797), Expect = 2.120e-87
Identity = 456/723 (63.07%), Postives = 466/723 (64.45%), Query Frame = 1
Query:   37 MAFGNDDGSGRPRSMERLLKAAEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVXXXXGSA-IDGDLERGGSVEVLAKTPSMSNRGGSGAGFELPEKVVRAFGDGXXXXXXXXXXXXXXGQEVLSRRRKSRERARAMGMLAKGNXXXXXXXXGXXXXXXXXXXXXXXXXXXXXXXAVVDGGGE-------RGSADSQMMLSTLLREAQAKEKAMLREIEEMRAREQTMRGELVNGLAGARKIYAQLKQGKQREQELRATNSILQAKIASSSSSSSYSTGEGERQAGRATAPRDPEKVPSSSKNGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX------------AMTTPRGAVPFKPFATRPPTAXXXXXXXXXXXXXEMLVNGADDAQRQPAAAAAAGLGRHDGACGG---DVMASATLVKDKVGTVSDEPSSEVAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX--------SRREIVEWERRVSQVLSIDNIPHHALDSTGDSLASPEDPDAAADTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNEKSNSKNDVPRGSPTEAGGGLGVSEGERAXXXXXXXXXXXXXXXXXXXXNESIGSKGRKSKGHRRRSGEGGGGRDRDGKERVSLELKKE 2112
            MAFGNDDGSGRPRS+ERLLKA  XXXXX                                  XXXXX XXXX    IDGD ERGGSVEVL KTPS  N GG GAGFELPEKVVRAFGDGXXXXXXXXXXXXXX                         XXXXXXXX XXXXXXXXXXXXXXXXXXXXXX  V            RGSADSQM+LST LREA+AKEKAMLRE+EEMRAREQTMRGELVNGLAGARKIYAQLK+G+QREQELRATNSILQAKIASSS SS   TGEGERQ G A  PR PEK+PSSSKNGA                                     XXXXXXXXXXXXXXXXXXX              AMTTPRGAVP KPFATRPPTA             E+ VNGADD QRQ                     D+MASATLVKDKVGTVSD+PSSEV   XXXXXXXXXXXXXXXXXXXXXXXXXXXXXX        SRREIVEWE                L STGDSLASPEDP      XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX  K    NDVPRGSP EAGGGLGVSEGERA                    NESIGSK RKSKGHRRRS          GKERVSLELKKE
Sbjct:  640 MAFGNDDGSGRPRSVERLLKAXXXXXXXTAEERVGEGAMAASAATAPATTSEDESVAGDSLSXXXXXXXXXXXXXXIDGDSERGGSVEVLVKTPSQRNGGGGGAGFELPEKVVRAFGDGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGDVGAXXXXXXXXXXRGSADSQMLLSTRLREARAKEKAMLREMEEMRAREQTMRGELVNGLAGARKIYAQLKEGRQREQELRATNSILQAKIASSSFSS---TGEGERQEGGAVVPRTPEKMPSSSKNGAAATAATSGSDRHPGASMPPSHSSATSATPFSGAAGTGXXXXXXXXXXXXXXXXXXXIAVLSSSRSTSPPPAMTTPRGAVPLKPFATRPPTAATVSTAAAADRGGELEVNGADDTQRQXXXXXXXXXXXXXXXXXXXXXDLMASATLVKDKVGTVSDKPSSEVPSAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSPPQSQESRREIVEWE---------------VLSSTGDSLASPEDPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXK----NDVPRGSPPEAGGGLGVSEGERAAAAIKRENSG----------NESIGSKSRKSKGHRRRSXXXXXXXXXXGKERVSLELKKE 1330          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig14190.3253.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LSH3_ECTSI8.510e-8967.49Hypothetical leucine rich repeat protein n=1 Tax=E... [more]
A0A6H5L8P8_9PHAE2.120e-8763.07Protein kinase domain-containing protein n=1 Tax=E... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig14190contigEcto-sp13_S_contig14190:197..4133 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start0
Seed ortholog score320.1
Seed ortholog evalue2.6e-84
Seed eggNOG ortholog2880.D8LSH3
Model size2142
Hectar predicted targeting categoryother localisation
Exons5
EggNOG free text desc.regulation of response to stimulus
EggNOG OGsCOG4886@1,KOG0619@2759
Cds size2142
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462757.9495118-CDS-Ecto-sp13_S_contig14190:196..9071681462757.9495118-CDS-Ecto-sp13_S_contig14190:196..907Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14190 197..907 +
1681462757.960418-CDS-Ecto-sp13_S_contig14190:1436..16311681462757.960418-CDS-Ecto-sp13_S_contig14190:1436..1631Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14190 1437..1631 +
1681462757.9699597-CDS-Ecto-sp13_S_contig14190:2318..29481681462757.9699597-CDS-Ecto-sp13_S_contig14190:2318..2948Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14190 2319..2948 +
1681462757.9799542-CDS-Ecto-sp13_S_contig14190:3278..34641681462757.9799542-CDS-Ecto-sp13_S_contig14190:3278..3464Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14190 3279..3464 +
1681462757.995042-CDS-Ecto-sp13_S_contig14190:3713..41331681462757.995042-CDS-Ecto-sp13_S_contig14190:3713..4133Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14190 3714..4133 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig14190.3253.1prot_Ecto-sp13_S_contig14190.3253.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig14190 197..4133 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig14190.3253.1

>prot_Ecto-sp13_S_contig14190.3253.1 ID=prot_Ecto-sp13_S_contig14190.3253.1|Name=mRNA_Ecto-sp13_S_contig14190.3253.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=714bp
LQAAEHVAAAAAMAFGNDDGSGRPRSMERLLKAAEAAAAAATVEEREGGG
AMAGSAAAATTSEDESVAGGSLSSGDGGGVSDGGGSAIDGDLERGGSVEV
LAKTPSMSNRGGSGAGFELPEKVVRAFGDGGGGGGSGAGPPGGDGQEVLS
RRRKSRERARAMGMLAKGNNSNSRNQGGGIQQRGENPNGDGRGGGVGAAA
AVVDGGGERGSADSQMMLSTLLREAQAKEKAMLREIEEMRAREQTMRGEL
VNGLAGARKIYAQLKQGKQREQELRATNSILQAKIASSSSSSSYSTGEGE
RQAGRATAPRDPEKVPSSSKNGAATTAATSGSDRHPGASMPPSYSSAIAA
PPFSGAAGTGGSTGGGGVAVSSSSRSASPPPAMTTPRGAVPFKPFATRPP
TAATAATAAAAGSSGEMLVNGADDAQRQPAAAAAAGLGRHDGACGGDVMA
SATLVKDKVGTVSDEPSSEVAAAAVAAAAAGTKPEERGGGSSGGSGSPPQ
SQQSRREIVEWERRVSQVLSIDNIPHHALDSTGDSLASPEDPDAAADTAA
AAAGSSAAADEFAQQQKKKSPGAADNNGAEDGRDQRSRGGDPPAAAAAAA
AEITAAAVAPSDGGNEKSNSKNDVPRGSPTEAGGGLGVSEGERAAAAAAA
IKRENSGGGASSGGNESIGSKGRKSKGHRRRSGEGGGGRDRDGKERVSLE
LKKEVGCLVGRVH*
back to top

mRNA from alignment at Ecto-sp13_S_contig14190:197..4133+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig14190.3253.1 ID=mRNA_Ecto-sp13_S_contig14190.3253.1|Name=mRNA_Ecto-sp13_S_contig14190.3253.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3937bp|location=Sequence derived from alignment at Ecto-sp13_S_contig14190:197..4133+ (Ectocarpus species13 EcNAP12_S_4_19m)
TTGCAGGCGGCCGAGCACGTGGCAGCGGCGGCGGCGATGGCCTTCGGCAA CGACGACGGCAGCGGCCGGCCGAGGAGCATGGAGCGGCTCCTGAAGGCGG CGGAGGCGGCGGCGGCGGCGGCGACGGTGGAGGAAAGGGAGGGCGGCGGC GCGATGGCCGGCTCTGCTGCCGCTGCCACCACCTCGGAAGATGAATCGGT CGCCGGCGGCAGTCTCTCCTCCGGCGACGGCGGCGGAGTCAGCGACGGCG GCGGCAGCGCGATCGACGGAGACCTGGAGAGAGGGGGGAGTGTAGAGGTT TTGGCCAAGACGCCTTCCATGAGTAACCGCGGCGGCAGCGGCGCCGGGTT CGAGCTTCCCGAGAAGGTCGTTCGCGCCTTCGGCGACGGCGGCGGCGGCG GCGGCAGCGGCGCAGGCCCCCCCGGAGGCGACGGTCAAGAGGTGCTCAGC AGGAGGAGGAAGAGCCGGGAGAGGGCGCGCGCGATGGGGATGCTCGCGAA GGGCAACAACAGCAACAGCCGGAACCAGGGCGGCGGCATCCAGCAGCGGG GAGAGAACCCGAACGGCGACGGCAGAGGGGGGGGCGTGGGCGCGGCGGCG GCGGTGGTGGACGGGGGCGGGGAGAGGGGTTCCGCGGACTCGCAGATGAT GCTGTCGACCCTCCTGCGGGAGGCCCAGGCAAAGGAGAAGGCCATGCTGA GGGAGATCGAGGTACGGGTGTCGCGTTCTCCCTTGTTGTTGTTCTTGTTG ATTTGCGGTCGTTGGTTGTTCGGCGAGTGTGTGCCCGGTGGTGGGTGCAC AAGAACAGCACAGCAGCCGTTTGCCTTGTTTCGTCTGTCTGCGGCGACCC ACCGAGGTTGACCCTCCCCCCCCCCTCCCCCCGCACGCGCGCGCCCTTGT TGTGGTGCGAGAGAAAGAGAGTCCTGGTGGGTTCACATGGGGGTTAAGAG TGGCTTCTATCGTCTTCAGACCACAACAACGAGAAGAAGAGTAACAACTG CAACCAACAGTGCGAACAACAACAGCATCAACATTAGATAATACAACACT TGTCATTACCAACATCAAAATCTGAGTCTAGGTATCTTTTTGTTGCGTTT CCTCCGCCGAAAAGCAGCATGCGATGTTGGCCGGACGATGATCGCCGCCG CCCAACATGCACAAGAACGAACGTAAAAACTATACGGTCTCTCAAGAAAA CACAAAACACACGATTCATACTGTAATACCAAAAAAACAGGAAATGCGAG CGAGGGAGCAGACGATGCGCGGGGAGCTGGTGAACGGCCTGGCTGGCGCC CGCAAGATTTACGCCCAGCTCAAGCAAGGGAAGCAGCGGGAGCAGGAGCT TCGCGCGACAAATTCGATCCTCCAAGCCAAGATCGCCTCCTCCTCCTCCT CCTCCTCCTACTCCACCGGTGAAGGGGAGAGACAAGTGAGATAAACCGTC GGGGGGGGGTCGGGGGGGACGGCTGACAATGGCGGGGATTTTGAGGGGGG CAGGGGGAGGGAGGCGGGGGGGGCTCGTTCGTGTTTGACCAGTTAGTTTT TTAAAATACATGTTCACGGGAAGGCTTCCCCGTTCGAGCTATGGTACATA CCCCTAATCGAACGGATGTCTTTAATGTCGAGGAAAGGTGTCGTCGTCGT CCTCGTCTTTTGACCTTCTGTCACGTTCTGTGACGTGTACACAAGAGTGT TTATGTTGATGTTTTTTTATTGTCTCGTCTTGCTTGTCGCTAGTCTATTC ACCTCTGGGTTCTTGTTTGCCGCAACAACCTCGCGGGGCCACCCCAGACC AATACCACCTTTTTGTTTCCTCCTGCCTGCAGTCCTTGCATTCGTGTTTT TTTTTCGCGAGAAGGGCTGAGCAGCCCCGTCCCTCACGCTAATGTTTTTT TTTTTCCAACCCCGGCCGGGGAAATGCGCGACCCGCGGTTTGCCCTGTTC TCGTGGGGTGTACACAACCAACTCTACTCCGACATATACAGCATCTTGAT CGACACCGTCGTTGCCTCTTCCGGCGAGCCACCGCCCGCGGCACAAGTCG TGCGTCCGTTCGCGCCACACAAGTATACACCCCATGACTCTTTTGCGCAT TGTCGTGTGCACCTTTGTTCAGGCGGGCAGGGCGACCGCTCCCCGGGACC CCGAGAAAGTGCCGTCCTCTTCCAAGAACGGCGCGGCAACGACGGCGGCA ACCTCAGGAAGCGATCGCCACCCCGGCGCAAGCATGCCCCCCTCCTACTC CTCCGCCATTGCCGCCCCCCCCTTCTCGGGCGCTGCTGGTACCGGCGGCA GTACCGGCGGCGGCGGCGTCGCCGTATCGTCTTCCTCTCGCTCGGCGTCT CCGCCCCCGGCCATGACCACGCCGCGTGGTGCGGTACCGTTTAAGCCGTT CGCAACCAGACCCCCCACCGCAGCAACAGCTGCGACGGCCGCGGCGGCAG GCAGTAGTGGTGAGATGCTGGTCAATGGAGCAGACGACGCCCAGAGGCAG CCGGCGGCGGCGGCGGCGGCGGGGTTAGGCAGACATGACGGTGCCTGCGG CGGCGACGTAATGGCATCGGCGACCCTCGTGAAGGATAAAGTGGGGACGG TTAGCGACGAGCCGTCGTCTGAGGTGGCGGCGGCGGCGGTGGCGGCGGCG GCGGCGGGGACAAAGCCAGAGGAGCGCGGCGGCGGCAGCAGCGGTGGTTC TGGCAGTCCTCCGCAGAGTCAACAGTCGCGGCGGGAGATCGTGGAGTGGG AGGTGGGGGGCGATTTTTTTTCGTTTTTACGAATCGATTTATCGTCGTGC GACCCTACAGTAAACCGTTTCGCTTGTTGTCAAGAGAGTCAGTTGTGCCA CTTCGCCGCTGTTTCCCTGCTCACGCGTTGGCTGCCCACGCCAATCCTAC CGCCTAGTTACCGCTGCCCCCCCCCCCCAGGGGTACATGGTTTTGCGACA AAACCACGTTTACAAATATTAGATACTGCTCACATAAGTAAAAAAAATGA CTGCTGTTGCTGCGCGTGACAAAAAAAACGTGACCGCTACACATCGCCGC ACGTACGGGTTGTGCTCGACGACCGATAACAGCGACGGGTGTCGCAGGTG CTGTCCATCGACAACATCCCCCACCACGCGCTGGACTCCACGGGGGATTC CTTGGCGTCTCCCGAAGACCCCGACGCCGCCGCCGACACCGCCGCCGCCG CCGCCGGTTCTAGCGCAGCGGCCGACGAGTTCGCGCAGCAACAAAAGAAG AAGAGTCCGGGAGCTGCGGTGAGGGAAGGGAGGGGGGGGGGGGAGGGGGG GGGATAGCCTGGCCGACAGCTGTTACCGTGATTTATTTTATTTTCTTTTT TTGATGTTGCGTGGTTTGTTTTTCTTCCATTACGAGTTGTCCGCCGAAAA GATGTGCAATTCTATGCCATGTACAACAAACCCAGCCGTCTGTTGCTGCG GATCTTTTACCGGAACCCACCGCTGCCGCCGCCGCCGCCGTTCTGCTCCG TTGCAAAAAAATGCCAGGACAACAACGGAGCAGAAGATGGAAGGGACCAG CGCTCTCGTGGCGGCGACCCCCCGGCAGCGGCGGCGGCGGCGGCGGCGGA AATCACCGCCGCAGCCGTTGCGCCTTCCGATGGGGGCAACGAGAAGAGCA ACAGCAAGAACGATGTGCCCCGGGGCTCCCCGACGGAGGCGGGCGGGGGG CTGGGGGTATCAGAAGGAGAGCGGGCGGCGGCGGCGGCGGCGGCGATCAA GAGGGAGAACAGCGGCGGAGGGGCCAGCAGCGGCGGGAACGAGAGCATTG GCTCAAAAGGCAGGAAGTCGAAGGGGCACAGGAGGAGAAGTGGCGAAGGC GGGGGCGGCAGAGACCGTGATGGGAAAGAGAGAGTTAGTCTGGAGCTCAA GAAAGAGGTAGGCTGTTTGGTCGGTCGAGTTCATTGA
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig14190:197..4133+

>mRNA_Ecto-sp13_S_contig14190.3253.1 ID=mRNA_Ecto-sp13_S_contig14190.3253.1|Name=mRNA_Ecto-sp13_S_contig14190.3253.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=2142bp|location=Sequence derived from alignment at Ecto-sp13_S_contig14190:197..4133+ (Ectocarpus species13 EcNAP12_S_4_19m)
TTGCAGGCGGCCGAGCACGTGGCAGCGGCGGCGGCGATGGCCTTCGGCAA
CGACGACGGCAGCGGCCGGCCGAGGAGCATGGAGCGGCTCCTGAAGGCGG
CGGAGGCGGCGGCGGCGGCGGCGACGGTGGAGGAAAGGGAGGGCGGCGGC
GCGATGGCCGGCTCTGCTGCCGCTGCCACCACCTCGGAAGATGAATCGGT
CGCCGGCGGCAGTCTCTCCTCCGGCGACGGCGGCGGAGTCAGCGACGGCG
GCGGCAGCGCGATCGACGGAGACCTGGAGAGAGGGGGGAGTGTAGAGGTT
TTGGCCAAGACGCCTTCCATGAGTAACCGCGGCGGCAGCGGCGCCGGGTT
CGAGCTTCCCGAGAAGGTCGTTCGCGCCTTCGGCGACGGCGGCGGCGGCG
GCGGCAGCGGCGCAGGCCCCCCCGGAGGCGACGGTCAAGAGGTGCTCAGC
AGGAGGAGGAAGAGCCGGGAGAGGGCGCGCGCGATGGGGATGCTCGCGAA
GGGCAACAACAGCAACAGCCGGAACCAGGGCGGCGGCATCCAGCAGCGGG
GAGAGAACCCGAACGGCGACGGCAGAGGGGGGGGCGTGGGCGCGGCGGCG
GCGGTGGTGGACGGGGGCGGGGAGAGGGGTTCCGCGGACTCGCAGATGAT
GCTGTCGACCCTCCTGCGGGAGGCCCAGGCAAAGGAGAAGGCCATGCTGA
GGGAGATCGAGGAAATGCGAGCGAGGGAGCAGACGATGCGCGGGGAGCTG
GTGAACGGCCTGGCTGGCGCCCGCAAGATTTACGCCCAGCTCAAGCAAGG
GAAGCAGCGGGAGCAGGAGCTTCGCGCGACAAATTCGATCCTCCAAGCCA
AGATCGCCTCCTCCTCCTCCTCCTCCTCCTACTCCACCGGTGAAGGGGAG
AGACAAGCGGGCAGGGCGACCGCTCCCCGGGACCCCGAGAAAGTGCCGTC
CTCTTCCAAGAACGGCGCGGCAACGACGGCGGCAACCTCAGGAAGCGATC
GCCACCCCGGCGCAAGCATGCCCCCCTCCTACTCCTCCGCCATTGCCGCC
CCCCCCTTCTCGGGCGCTGCTGGTACCGGCGGCAGTACCGGCGGCGGCGG
CGTCGCCGTATCGTCTTCCTCTCGCTCGGCGTCTCCGCCCCCGGCCATGA
CCACGCCGCGTGGTGCGGTACCGTTTAAGCCGTTCGCAACCAGACCCCCC
ACCGCAGCAACAGCTGCGACGGCCGCGGCGGCAGGCAGTAGTGGTGAGAT
GCTGGTCAATGGAGCAGACGACGCCCAGAGGCAGCCGGCGGCGGCGGCGG
CGGCGGGGTTAGGCAGACATGACGGTGCCTGCGGCGGCGACGTAATGGCA
TCGGCGACCCTCGTGAAGGATAAAGTGGGGACGGTTAGCGACGAGCCGTC
GTCTGAGGTGGCGGCGGCGGCGGTGGCGGCGGCGGCGGCGGGGACAAAGC
CAGAGGAGCGCGGCGGCGGCAGCAGCGGTGGTTCTGGCAGTCCTCCGCAG
AGTCAACAGTCGCGGCGGGAGATCGTGGAGTGGGAGCGACGGGTGTCGCA
GGTGCTGTCCATCGACAACATCCCCCACCACGCGCTGGACTCCACGGGGG
ATTCCTTGGCGTCTCCCGAAGACCCCGACGCCGCCGCCGACACCGCCGCC
GCCGCCGCCGGTTCTAGCGCAGCGGCCGACGAGTTCGCGCAGCAACAAAA
GAAGAAGAGTCCGGGAGCTGCGGACAACAACGGAGCAGAAGATGGAAGGG
ACCAGCGCTCTCGTGGCGGCGACCCCCCGGCAGCGGCGGCGGCGGCGGCG
GCGGAAATCACCGCCGCAGCCGTTGCGCCTTCCGATGGGGGCAACGAGAA
GAGCAACAGCAAGAACGATGTGCCCCGGGGCTCCCCGACGGAGGCGGGCG
GGGGGCTGGGGGTATCAGAAGGAGAGCGGGCGGCGGCGGCGGCGGCGGCG
ATCAAGAGGGAGAACAGCGGCGGAGGGGCCAGCAGCGGCGGGAACGAGAG
CATTGGCTCAAAAGGCAGGAAGTCGAAGGGGCACAGGAGGAGAAGTGGCG
AAGGCGGGGGCGGCAGAGACCGTGATGGGAAAGAGAGAGTTAGTCTGGAG
CTCAAGAAAGAGGTAGGCTGTTTGGTCGGTCGAGTTCATTGA
back to top