mRNA_Ecto-sp13_S_contig14164.3238.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig14164.3238.1
Unique NamemRNA_Ecto-sp13_S_contig14164.3238.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
[Close]
BLAST of mRNA_Ecto-sp13_S_contig14164.3238.1 vs. uniprot
Match: D8LAX6_ECTSI (Outermembrane protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LAX6_ECTSI)

HSP 1 Score: 971 bits (2511), Expect = 0.000e+0
Identity = 684/800 (85.50%), Postives = 693/800 (86.62%), Query Frame = 1 
Query:    1 QEDVRVARQGHAAVCHQRRVLVLGGVSEGTEFMNDCLDDTPGATLNNGTLVVGGGAALRRPSHDGEGGRGSATSFGYAEGXXXXXXX----LSRRPSSRASRHQSMEDDLWGWFGDDRPPSETALHAMARGDAAESAAGGGIGVNGSAAENAGVTVSTLALMERLAKLSAGRVLLDRVRADTRSLASVVTSAVHSAFLGEGVDAAAAAAAADVSGAAGTAEESCPATRAVHFEAGCSPPGGRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX--VDENGSSGSSGLGLAAAPEATGDDEKSGGQARGLRQRVVEARAEIEGLQREIRRLVRGVGEGGHAEETRARVAPLVERRAVLAQAARADAERMAKRLQEISEAQQSNHSNVDSAMREVERRARTAGGRVWALIRVQSRQHSSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAAPEWVLSRLELTRMRRRGSFLDGDEVGPVRSATAAAEAXXXXXXXXXX-EASTADSFGHLARLASVDGDGDRRDTDEAVSDLRDAMEQHSAALSRLARWMVNVAPPPSP---PAGGSEAGLMAAAPMENHSAAVGVEAHGDLPSPSCPGLSGDSGFEVAGSSSEEDGVRVMLELSRESDVLESRVKRERFKAHRAADEEIHRTPEMYREACALGNALILKGHDYLSQALAEAGRDSAEASIMAEEASAWAGTVGELVDAEGLAAKGLALKAKVKDLRNSVLDQEDVVTDCEGALDKRRRRGAKADELEPLQV 2370
            +EDVRVARQ                VSEGTEFMNDCL DTPGA LNNGTLVVG                           XXXXXXX    LSRRPSSRASRHQSMEDDLWGWFGDDRPPSETALHAMARGDAAESAA GGIGVNGSAAENAGVTVSTLAL ERLAKLSAGRVLLDRVRADTRSLASVVTSAVHSAFLGEGV AA       VSG A TA+ SCPATRAVHF AGCSPPGGR         XXXXXXXXXXXXXXXXXXXXXXX    VDENGSSG+SGLGLAAA E+TGDDEKSGGQA GLRQRVVEARAEIEGLQREIRRLVRG GEGGHAEETRARVAPLVERRAVLA AARADAERMAKRLQEISEAQQSNHSNVDSAMREVERRARTAGGRVWALIR QSRQHSSXXXXXXXXXXXXXXXX        XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX AAAPEWVLSRLELTRMRRRGSFLDGDEVGPVR+A A AE XXXXXXXXXX EASTADSFGHLARLASVDGDGDRRDTDEAVS+LRDAMEQHSAALSRLA WM NVAP       PAGGSEAGLMAAAPMENH AAVGVEAHGDLPSPSCPG SG+SGFEVAGSSSEEDGVR MLELSRESDVLESRVKRERFKAHRAADEEIHRTPEMYREACALGNALILKGHDYLSQALAEAGRDSAEASIMAEEASAWAGTVGELVDAEGLAAKGLALKAKV++LRNSVLDQEDVVTDCEGALDKRRRRGAKADELEPLQ 
Sbjct:  149 EEDVRVARQXXXXXXXXXXXXXXXXVSEGTEFMNDCLADTPGAILNNGTLVVGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLSRRPSSRASRHQSMEDDLWGWFGDDRPPSETALHAMARGDAAESAAAGGIGVNGSAAENAGVTVSTLALTERLAKLSAGRVLLDRVRADTRSLASVVTSAVHSAFLGEGVAAAXXXXXXXVSGKAVTAQVSCPATRAVHFTAGCSPPGGRQRLRSGAEAXXXXXXXXXXXXXXXXXXXXXXXVASSVDENGSSGASGLGLAAAAESTGDDEKSGGQAGGLRQRVVEARAEIEGLQREIRRLVRGGGEGGHAEETRARVAPLVERRAVLAPAARADAERMAKRLQEISEAQQSNHSNVDSAMREVERRARTAGGRVWALIRGQSRQHSSXXXXXXXXXXXXXXXXLNPVTEGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-AAAPEWVLSRLELTRMRRRGSFLDGDEVGPVRAAAAGAEXXXXXXXXXXXGEASTADSFGHLARLASVDGDGDRRDTDEAVSELRDAMEQHSAALSRLAGWMFNVAPXXXXXXLPAGGSEAGLMAAAPMENHPAAVGVEAHGDLPSPSCPGPSGESGFEVAGSSSEEDGVRAMLELSRESDVLESRVKRERFKAHRAADEEIHRTPEMYREACALGNALILKGHDYLSQALAEAGRDSAEASIMAEEASAWAGTVGELVDAEGLAAKGLALKAKVEELRNSVLDQEDVVTDCEGALDKRRRRGAKADELEPLQA 947
[Close]
BLAST of mRNA_Ecto-sp13_S_contig14164.3238.1 vs. uniprot
Match: A0A6H5JNX3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNX3_9PHAE)

HSP 1 Score: 913 bits (2359), Expect = 9.510e-309
Identity = 647/853 (75.85%), Postives = 659/853 (77.26%), Query Frame = 1 
Query:    1 QEDVRVARQGHAAVCHQRRVLVLGGVSEGTEFMNDCLDDTPGATLNNGTLVVGGGAALRRPSHDGEGGRGSAT----------------------------------------------------SFGYAEGXXXXXXX-------LSRRPSSRASRHQSMEDDLWGWFGDDRPPSETALHAMARGDAAESAAGGGIGVNGSAAENAGVTVSTLALMERLAKLSAGRVLLDRVRADTRSLASVVTSAVHSAFLGEGVDAAAAAAAADVSGAAGTAEESCPATRAVHFEAGCSPPGGRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXV----DENGSSGSSGLGLAAAPEATGDDEKSGGQARGLRQRVVEARAEIEGLQREIRRLVRGVGEGGHAEETRARVAPLVERRAVLAQAARADAERMAKRLQEISEAQQSNHSNVDSAMREVERRARTAGGRVWALIRVQSRQHSSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAAPEWVLSRLELTRMRRRGSFLDGDEVGPVRSATAAAEAXXXXXXXXXXEASTADSFGHLARLASVDGDGDRRDTDEAVSDLRDAMEQHSAALSRLARWMVNVAPPPSPPAGGSEAGLMAAAPMENHSAAVGVEAHGDLPSPSCPGLSGDSGFEVAGSSSEEDGVRVMLELSRESDVLESRVKRERFKAHRAADEEIHRTPEMYREACALGNALILKGHDYLSQALAEAGRDSAEASIMAEEASAWAGTVGELVDAEGLAAKGLALKAKVKDLRNSVLDQEDVVTDCEGALDKRRRRGAKADELEPLQV 2370
            +EDVRVARQ                VSEGTEFMNDCL     A L  G L   G +                                                                     SFG+   XXXXXXX       LSRRPSSRASRH+S+EDDLWGWFGDDRPPSETALHAMARGDAAESAA GG+GVNGSAAENAGVTVSTLAL ERLAKLSAGRVLLDRVRADTRSLASVVTSAVHSAFLGEGV AAAA  A  +SGAA TAE  CPATRAVHFEAGCSPPGGR                 XXXXXXXXXXXXXXXXXV    DENGSSG+SGLGLAAA EATGDDEKSGGQA GLRQRVVEARAEIEGLQREIRRL RG GEGGHAEETRARVAPLVERRAVLAQAARADAERMAKRLQEISEAQQSNHSNVDSAMREVERRARTAGGRVWALIR QSRQHSS XXXXXXXXXXXXXXXX     XXXXXXXXXXXXXXXXXXXXXXXXXX                  AAAPEWVLSRLELTRMRRRGSFLDGDEVGPVR+A AA EAXXXXXXXX  EASTADSF HLARLAS DGDG+RRDTDEAVS LRDAMEQHSAALSRLA WMVNVAP        SEAGLMAAA  E H AAVGVEAHG LPSPS PGLSGDSGFEVAGSSSEEDGVR MLELSRESDVLE RVKRERFKAHRAADEEIHRTPEMYREACALGNALILKGHDYLSQALAEAGRDSAEASIMAEEASAWAGTVGELVDAEGLAAKGLALKAKV++LRNSVLD EDVVTDCEGALDKRRRRGAKADELEPLQ 
Sbjct:  265 EEDVRVARQXXXXXXXXXXXXXXXXVSEGTEFMNDCLAGASSAQLTAGALREQGASTTSTXXXXXXXXXXXXXXXTALLSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSFGFXXXXXXXXXXXXXXXXXLSRRPSSRASRHESVEDDLWGWFGDDRPPSETALHAMARGDAAESAAAGGVGVNGSAAENAGVTVSTLALTERLAKLSAGRVLLDRVRADTRSLASVVTSAVHSAFLGEGVAAAAAXXA--MSGAAVTAEVRCPATRAVHFEAGCSPPGGRRRLRPGAEAVAEAKQTEXXXXXXXXXXXXXXXXXVASSVDENGSSGASGLGLAAAAEATGDDEKSGGQASGLRQRVVEARAEIEGLQREIRRLARGGGEGGHAEETRARVAPLVERRAVLAQAARADAERMAKRLQEISEAQQSNHSNVDSAMREVERRARTAGGRVWALIRGQSRQHSSDXXXXXXXXXXXXXXXXLNPGAXXXXXXXXXXXXXXXXXXXXXXXXXX------------------AAAPEWVLSRLELTRMRRRGSFLDGDEVGPVRAAAAATEAXXXXXXXXG-EASTADSFAHLARLASEDGDGERRDTDEAVSGLRDAMEQHSAALSRLAGWMVNVAPXXXXXXXXSEAGLMAAAQTEIHPAAVGVEAHGGLPSPSYPGLSGDSGFEVAGSSSEEDGVRAMLELSRESDVLEGRVKRERFKAHRAADEEIHRTPEMYREACALGNALILKGHDYLSQALAEAGRDSAEASIMAEEASAWAGTVGELVDAEGLAAKGLALKAKVEELRNSVLDLEDVVTDCEGALDKRRRRGAKADELEPLQA 1096
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig14164.3238.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LAX6_ECTSI0.000e+085.50Outermembrane protein n=1 Tax=Ectocarpus siliculos... [more]
A0A6H5JNX3_9PHAE9.510e-30975.85Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig14164contigEcto-sp13_S_contig14164:297..4442 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start0
Seed ortholog score984.2
Seed ortholog evalue3.6e-284
Seed eggNOG ortholog2880.D8LAX6
Model size2382
KEGG koko:K10592
KEGG Pathwayko04120,map04120
Hectar predicted targeting categoryother localisation
GOsGO:0000151,GO:0003674,GO:0003824,GO:0004842,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006355,GO:0006464,GO:0006508,GO:0006511,GO:0006807,GO:0006810,GO:0006811,GO:0007154,GO:0007165,GO:0007275,GO:0007399,GO:0007417,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009889,GO:0009890,GO:0009892,GO:0009987,GO:0010468,GO:0010498,GO:0010556,GO:0010558,GO:0010605,GO:0010629,GO:0016032,GO:0016567,GO:0016740,GO:0019058,GO:0019219,GO:0019222,GO:0019538,GO:0019787,GO:0019941,GO:0023052,GO:0030163,GO:0030260,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0032446,GO:0032501,GO:0032502,GO:0032991,GO:0034220,GO:0036211,GO:0043161,GO:0043170,GO:0043412,GO:0043632,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044403,GO:0044409,GO:0044419,GO:0044424,GO:0044444,GO:0044464,GO:0045892,GO:0045934,GO:0046718,GO:0048519,GO:0048523,GO:0048731,GO:0048856,GO:0050789,GO:0050794,GO:0050896,GO:0051171,GO:0051172,GO:0051179,GO:0051234,GO:0051252,GO:0051253,GO:0051603,GO:0051701,GO:0051704,GO:0051716,GO:0051806,GO:0051828,GO:0055085,GO:0060255,GO:0061630,GO:0061659,GO:0065007,GO:0070647,GO:0071704,GO:0080090,GO:0140096,GO:1901564,GO:1901565,GO:1901575,GO:1902494,GO:1902679,GO:1903506,GO:1903507,GO:1990234,GO:2000112,GO:2000113,GO:2001141
Exons5
EggNOG free text desc.ubiquitin protein ligase activity
EggNOG OGsCOG5021@1,KOG0939@2759
Ec32 ortholog descriptionSerine/threonine/dual specificity protein kinase, catalytic domain
Ec32 orthologEc-27_006070.1
EC2.3.2.26
Cds size2382
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko04121
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462756.8018005-CDS-Ecto-sp13_S_contig14164:296..4081681462756.8018005-CDS-Ecto-sp13_S_contig14164:296..408Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14164 297..408 -
1681462756.8181005-CDS-Ecto-sp13_S_contig14164:828..9831681462756.8181005-CDS-Ecto-sp13_S_contig14164:828..983Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14164 829..983 -
1681462756.8286026-CDS-Ecto-sp13_S_contig14164:1463..24471681462756.8286026-CDS-Ecto-sp13_S_contig14164:1463..2447Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14164 1464..2447 -
1681462756.8394897-CDS-Ecto-sp13_S_contig14164:2791..38091681462756.8394897-CDS-Ecto-sp13_S_contig14164:2791..3809Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14164 2792..3809 -
1681462756.8496242-CDS-Ecto-sp13_S_contig14164:4329..44421681462756.8496242-CDS-Ecto-sp13_S_contig14164:4329..4442Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14164 4330..4442 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig14164.3238.1prot_Ecto-sp13_S_contig14164.3238.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig14164 297..4442 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig14164.3238.1

>prot_Ecto-sp13_S_contig14164.3238.1 ID=prot_Ecto-sp13_S_contig14164.3238.1|Name=mRNA_Ecto-sp13_S_contig14164.3238.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=794bp
QEDVRVARQGHAAVCHQRRVLVLGGVSEGTEFMNDCLDDTPGATLNNGTL
VVGGGAALRRPSHDGEGGRGSATSFGYAEGGGGGGAALSRRPSSRASRHQ
SMEDDLWGWFGDDRPPSETALHAMARGDAAESAAGGGIGVNGSAAENAGV
TVSTLALMERLAKLSAGRVLLDRVRADTRSLASVVTSAVHSAFLGEGVDA
AAAAAAADVSGAAGTAEESCPATRAVHFEAGCSPPGGRRRLPGEEGGSEA
KQTEEEEEEEEGKEGGEEVASSVDENGSSGSSGLGLAAAPEATGDDEKSG
GQARGLRQRVVEARAEIEGLQREIRRLVRGVGEGGHAEETRARVAPLVER
RAVLAQAARADAERMAKRLQEISEAQQSNHSNVDSAMREVERRARTAGGR
VWALIRVQSRQHSSDDDDDDDDEGDESNDGLSPSTEGGGSAGAGGGGGGE
ATASTRTAGGGGGLFPSEHDGGGGGGGGGDAAAPEWVLSRLELTRMRRRG
SFLDGDEVGPVRSATAAAEAAAVSAAAAAGEASTADSFGHLARLASVDGD
GDRRDTDEAVSDLRDAMEQHSAALSRLARWMVNVAPPPSPPAGGSEAGLM
AAAPMENHSAAVGVEAHGDLPSPSCPGLSGDSGFEVAGSSSEEDGVRVML
ELSRESDVLESRVKRERFKAHRAADEEIHRTPEMYREACALGNALILKGH
DYLSQALAEAGRDSAEASIMAEEASAWAGTVGELVDAEGLAAKGLALKAK
VKDLRNSVLDQEDVVTDCEGALDKRRRRGAKADELEPLQVWDR*
back to top

mRNA from alignment at Ecto-sp13_S_contig14164:297..4442-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig14164.3238.1 ID=mRNA_Ecto-sp13_S_contig14164.3238.1|Name=mRNA_Ecto-sp13_S_contig14164.3238.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=4146bp|location=Sequence derived from alignment at Ecto-sp13_S_contig14164:297..4442- (Ectocarpus species13 EcNAP12_S_4_19m)
CAGGAGGATGTCCGTGTGGCGAGGCAGGGTCACGCCGCGGTCTGCCACCA
ACGGAGAGTGCTCGTTCTCGGTGGAGTTTCTGAGGGAACGGAGTTCATGA
ACGACTGCCTAGAGTGAGTTGAAACCGATCAATGCGATTCTCCGTTCCTG
CCTGCCGCGTCTGTTCGGTGTTGTATGACAATCGAGCTTTCATTTGGGAG
TGGTGGTGGTGTCTGCGGTGGGAGTGTTGTTCTTGGTGCAAGGACAAACG
CGGAGTGTGGGTGGTGGTGGTGGGTGCTCCTTTCGTTCAGAGTCTATTGG
TACGGATCAGCACGCGGCCTCATTTTCTGCCCCACAAAAGGGCGACGCTG
CTCGACGACATGTCGGCAGCGTTGTATCGATTTTCCTGCACGTTTTGACA
GTTATGTTGTCAACGTCCTCCCCTCCCCTCGCGTACTTGTTACGGGACGG
AAATGGAACGTTCCACATTTCCCCCAGAGGTGCATCATCCGCACAATTCA
CGGCGGGTGCTTTGCGTGAGCAAGGGGCCAGCACAACGTCTACGGGAGCC
AGCGACGACGCGGGTTCCTCGACCCGCAGCCACGGCGCTACCGCACTGCT
GTTTCCTCCCCCCCCTGTTGCCGCCATTGGCAGCGATACCCCCGGTGCGA
CGCTCAACAACGGTACTCTCGTCGTGGGTGGCGGGGCCGCGTTGCGGAGG
CCAAGCCACGACGGCGAGGGAGGGAGGGGCAGCGCCACCTCCTTCGGATA
CGCCGAGGGCGGCGGCGGCGGCGGCGCGGCTCTTTCTCGCCGCCCGAGCA
GCCGCGCCTCCAGACATCAGTCGATGGAGGATGATCTCTGGGGATGGTTT
GGAGACGACCGTCCCCCGTCTGAGACCGCCCTCCACGCCATGGCAAGAGG
CGATGCGGCGGAATCCGCCGCCGGCGGCGGTATCGGTGTCAACGGGTCGG
CGGCGGAAAACGCTGGGGTGACGGTCAGCACGCTGGCGCTCATGGAGCGC
CTCGCGAAGCTCTCGGCGGGCCGCGTGCTGCTGGACCGGGTGAGGGCGGA
CACGCGCTCTCTCGCCTCCGTTGTCACGTCCGCGGTGCACAGCGCGTTTC
TCGGTGAGGGGGTGGACGCCGCCGCCGCCGCCGCCGCCGCCGACGTGTCG
GGAGCGGCGGGGACGGCGGAGGAAAGCTGTCCTGCTACTAGAGCGGTCCA
CTTTGAGGCGGGATGCTCGCCGCCCGGGGGGAGACGGCGGCTACCGGGAG
AAGAGGGTGGCTCTGAGGCGAAGCAAACGGAGGAGGAGGAGGAGGAGGAG
GAAGGCAAAGAGGGCGGGGAAGAGGTGGCCTCCTCCGTCGACGAGAACGG
GTCTAGCGGATCGTCGGGGTTAGGGTTAGCCGCCGCCCCGGAAGCGACCG
GAGACGACGAGAAGAGCGGAGGACAAGCCCGTGGCCTTCGTCAGCGGGTG
GTGGAAGCGAGGGCCGAGATCGAGGGCCTTCAGAGGGAGATCAGGCGGCT
GGTGCGGGGCGTCGGAGAAGGGGGGCATGCGGAAGAGACGAGAGCGCGGG
TGGCGCCGCTGGTGGAGCGGAGGGCGGTGCTCGCGCAGGCGGCTCGAGCA
GACGCCGAGAGGATGGCGAAGCGTTTGCAGGAGATTTCGGAGGCGCAGCA
GGTGGGAGAAGCAAGCGAGACGGCGGGATGGTGTGTTCTGCTTCGCGTGT
GCTGGTGCTGCTGTACATGTGGTTGCTGTTACGTGGCGCTGTGGCAATCA
TCGCCGAAGGTCATCGCCAGAGCATAGCCCCTCCAATAACATTTGTGCGC
AGCTTGTGTTTGTCGATGCAGGATAAGCGATGTCAGTAGTAACACTCGCC
AGAAAGACAAGCAAGCGAAGTCGTACCCCTTTCCCATCTGCGCTACCCCT
CGTGCAATCGAACGGCAGTCGAACCACTCCAACGTGTACTCCGGTACCCC
CCCCTCATCCCCTGCGCGTTGCCCCTTCGTGCAAACAAACGCCAGTCGAA
CCACTCCAACGTGGACTCGGCGATGCGGGAGGTGGAGCGCCGCGCCCGGA
CCGCCGGCGGCCGCGTGTGGGCGCTCATCCGCGTGCAGAGTCGGCAGCAC
TCGAGCGATGACGACGACGACGACGATGACGAAGGAGACGAAAGCAACGA
CGGCCTTAGCCCCAGCACCGAGGGCGGCGGCAGCGCCGGTGCAGGAGGAG
GAGGGGGAGGAGAAGCGACGGCATCGACGAGAACAGCAGGCGGCGGCGGA
GGCTTGTTTCCGTCCGAGCATGATGGCGGTGGCGGTGGCGGCGGCGGCGG
CGACGCTGCGGCGCCAGAGTGGGTGCTCTCGCGGCTGGAGCTGACGCGCA
TGCGGCGGCGAGGCTCCTTCTTGGATGGCGATGAAGTTGGACCCGTCAGG
TCGGCAACCGCGGCTGCGGAGGCGGCCGCCGTTTCCGCCGCCGCCGCCGC
CGGCGAAGCAAGTACGGCTGACTCTTTCGGGCACCTGGCGAGGCTCGCTT
CCGTGGACGGCGACGGCGACCGGCGGGACACCGACGAGGCGGTGTCAGAT
CTCCGAGACGCCATGGAGCAGCACTCGGCGGCGCTCTCGCGGCTGGCGAG
ATGGATGGTCAATGTCGCACCGCCGCCATCGCCGCCCGCAGGCGGCAGCG
AAGCCGGGTTGATGGCTGCTGCTCCGATGGAAAACCATTCCGCAGCGGTA
GGAGTCGAGGCGCACGGCGATTTACCTTCGCCGTCTTGCCCGGGCCTAAG
CGGCGACAGCGGGTTCGAGGTCGCGGGGTCGTCGAGCGAGGAGGATGGGG
TGAGGGTGATGCTGGAGCTGTCTCGAGAGTCGGACGTGCTCGAAAGCCGA
GTCAAACGGGAGCGCTTCAAGGCCCACCGTGCGGCAGATGAGGAGATACA
CCGGACCCCGGAGATGTACAGGGAGGCGTGCGCGCTCGGGAATGCTCTGA
TACTCAAGGGGCACGACTACCTATCTCAGGTGTGTTGGGGTGGCTTGCCG
TTTGGGGTTGGTGTTTTCTCCGGAATTTCGAGCGCGGTGTTACGGAAATC
CACGCATATGAAAGGCAGGAAAAGGGTGTGAAGGCTCTTGCCAAGCTTAA
AAGTTCAGGGCCTAACTCCCTTTTCCCAGGGATGTGCCTCTAGGCATGGC
ATCGTGCGACCCCAGGGGGGTATGGCTCGTTTTTCTAGATCGTTTGTTTA
GTGTTGAAGTGTGCCTTGGTAGTTTCGGTAGCGATCCCTGTATAACGCTG
AGTGAAAAAAGCGTTTCGCGCTGTATATATGGCACGTGAAAGCGCGTGAG
ACAGATGGCATGTTCAAGGTGGCTAGTAACACTCTACATAGAGACGGCTG
TCCGGTGTACGTCCAGCGAAGTCTCTTGGCGCTATCTATGCCGCTTGCGC
AGGTGACCAATCAGTATTGTGCTGAATTGTTGAATATGGTGATTTCATTG
ACCTAATAGGCGCTAGCCGAAGCCGGCCGAGACTCCGCCGAAGCTTCCAT
CATGGCAGAGGAGGCCAGCGCTTGGGCGGGGACAGTGGGCGAGCTTGTGG
ACGCGGAAGGCCTTGCCGCTAAGGGTCTGGCCCTCAAGGCGAAAGTGAAG
GATCTGAGAAACAGGTGAGCCCGCCGCCAGGGTAGACAAGGCCGGACATA
GGGAATGTGTGTATGAACACAGCTTTTTCCGTGACGGAACACCTGCCCCT
TTTCATGCGAAAGACATTTCTGACACTGCATGCCAGGCACATGACAGGAT
GAATGAGGTGGCTAGCCATTGTAGATCTACTTACGGCTGTACAGCATAGC
ATGAAGTTTGGTTGACACGGGACGTTAAAGGAGTGGGCGAAGCGGAGGGT
GAACAGGGGTAGATTGTGTTTTTCTGCAGCGACCGGGACAAGCGGGACCG
GGCTATTGTAGCAGGGCTTCAGACGGGGGGCAAGGGCAATCAGGAATCGC
TGACTTTGAAATAGTAGCCTTGATCTAGCACCTCCAACTCCCCCCTGTTT
GTGCCCCAAAACGAATGGATGGGTCAATCAACAGCGTTCTCGACCAGGAG
GATGTGGTGACCGATTGTGAGGGGGCCTTGGACAAGAGGCGAAGGAGGGG
CGCCAAAGCCGACGAGCTCGAACCGCTTCAGGTTTGGGACCGATGA
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig14164:297..4442-

>mRNA_Ecto-sp13_S_contig14164.3238.1 ID=mRNA_Ecto-sp13_S_contig14164.3238.1|Name=mRNA_Ecto-sp13_S_contig14164.3238.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=2382bp|location=Sequence derived from alignment at Ecto-sp13_S_contig14164:297..4442- (Ectocarpus species13 EcNAP12_S_4_19m)
CAGGAGGATGTCCGTGTGGCGAGGCAGGGTCACGCCGCGGTCTGCCACCA
ACGGAGAGTGCTCGTTCTCGGTGGAGTTTCTGAGGGAACGGAGTTCATGA
ACGACTGCCTAGACGATACCCCCGGTGCGACGCTCAACAACGGTACTCTC
GTCGTGGGTGGCGGGGCCGCGTTGCGGAGGCCAAGCCACGACGGCGAGGG
AGGGAGGGGCAGCGCCACCTCCTTCGGATACGCCGAGGGCGGCGGCGGCG
GCGGCGCGGCTCTTTCTCGCCGCCCGAGCAGCCGCGCCTCCAGACATCAG
TCGATGGAGGATGATCTCTGGGGATGGTTTGGAGACGACCGTCCCCCGTC
TGAGACCGCCCTCCACGCCATGGCAAGAGGCGATGCGGCGGAATCCGCCG
CCGGCGGCGGTATCGGTGTCAACGGGTCGGCGGCGGAAAACGCTGGGGTG
ACGGTCAGCACGCTGGCGCTCATGGAGCGCCTCGCGAAGCTCTCGGCGGG
CCGCGTGCTGCTGGACCGGGTGAGGGCGGACACGCGCTCTCTCGCCTCCG
TTGTCACGTCCGCGGTGCACAGCGCGTTTCTCGGTGAGGGGGTGGACGCC
GCCGCCGCCGCCGCCGCCGCCGACGTGTCGGGAGCGGCGGGGACGGCGGA
GGAAAGCTGTCCTGCTACTAGAGCGGTCCACTTTGAGGCGGGATGCTCGC
CGCCCGGGGGGAGACGGCGGCTACCGGGAGAAGAGGGTGGCTCTGAGGCG
AAGCAAACGGAGGAGGAGGAGGAGGAGGAGGAAGGCAAAGAGGGCGGGGA
AGAGGTGGCCTCCTCCGTCGACGAGAACGGGTCTAGCGGATCGTCGGGGT
TAGGGTTAGCCGCCGCCCCGGAAGCGACCGGAGACGACGAGAAGAGCGGA
GGACAAGCCCGTGGCCTTCGTCAGCGGGTGGTGGAAGCGAGGGCCGAGAT
CGAGGGCCTTCAGAGGGAGATCAGGCGGCTGGTGCGGGGCGTCGGAGAAG
GGGGGCATGCGGAAGAGACGAGAGCGCGGGTGGCGCCGCTGGTGGAGCGG
AGGGCGGTGCTCGCGCAGGCGGCTCGAGCAGACGCCGAGAGGATGGCGAA
GCGTTTGCAGGAGATTTCGGAGGCGCAGCAGTCGAACCACTCCAACGTGG
ACTCGGCGATGCGGGAGGTGGAGCGCCGCGCCCGGACCGCCGGCGGCCGC
GTGTGGGCGCTCATCCGCGTGCAGAGTCGGCAGCACTCGAGCGATGACGA
CGACGACGACGATGACGAAGGAGACGAAAGCAACGACGGCCTTAGCCCCA
GCACCGAGGGCGGCGGCAGCGCCGGTGCAGGAGGAGGAGGGGGAGGAGAA
GCGACGGCATCGACGAGAACAGCAGGCGGCGGCGGAGGCTTGTTTCCGTC
CGAGCATGATGGCGGTGGCGGTGGCGGCGGCGGCGGCGACGCTGCGGCGC
CAGAGTGGGTGCTCTCGCGGCTGGAGCTGACGCGCATGCGGCGGCGAGGC
TCCTTCTTGGATGGCGATGAAGTTGGACCCGTCAGGTCGGCAACCGCGGC
TGCGGAGGCGGCCGCCGTTTCCGCCGCCGCCGCCGCCGGCGAAGCAAGTA
CGGCTGACTCTTTCGGGCACCTGGCGAGGCTCGCTTCCGTGGACGGCGAC
GGCGACCGGCGGGACACCGACGAGGCGGTGTCAGATCTCCGAGACGCCAT
GGAGCAGCACTCGGCGGCGCTCTCGCGGCTGGCGAGATGGATGGTCAATG
TCGCACCGCCGCCATCGCCGCCCGCAGGCGGCAGCGAAGCCGGGTTGATG
GCTGCTGCTCCGATGGAAAACCATTCCGCAGCGGTAGGAGTCGAGGCGCA
CGGCGATTTACCTTCGCCGTCTTGCCCGGGCCTAAGCGGCGACAGCGGGT
TCGAGGTCGCGGGGTCGTCGAGCGAGGAGGATGGGGTGAGGGTGATGCTG
GAGCTGTCTCGAGAGTCGGACGTGCTCGAAAGCCGAGTCAAACGGGAGCG
CTTCAAGGCCCACCGTGCGGCAGATGAGGAGATACACCGGACCCCGGAGA
TGTACAGGGAGGCGTGCGCGCTCGGGAATGCTCTGATACTCAAGGGGCAC
GACTACCTATCTCAGGCGCTAGCCGAAGCCGGCCGAGACTCCGCCGAAGC
TTCCATCATGGCAGAGGAGGCCAGCGCTTGGGCGGGGACAGTGGGCGAGC
TTGTGGACGCGGAAGGCCTTGCCGCTAAGGGTCTGGCCCTCAAGGCGAAA
GTGAAGGATCTGAGAAACAGCGTTCTCGACCAGGAGGATGTGGTGACCGA
TTGTGAGGGGGCCTTGGACAAGAGGCGAAGGAGGGGCGCCAAAGCCGACG
AGCTCGAACCGCTTCAGGTTTGGGACCGATGA
back to top