prot_Ecto-sp13_S_contig14150.3230.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig14150.3230.1
Unique Nameprot_Ecto-sp13_S_contig14150.3230.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length440
Homology
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BLAST of mRNA_Ecto-sp13_S_contig14150.3230.1 vs. uniprot
Match: A0A6H5KFF8_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KFF8_9PHAE)

HSP 1 Score: 808 bits (2088), Expect = 2.720e-293
Identity = 412/438 (94.06%), Postives = 419/438 (95.66%), Query Frame = 0 
Query:    2 GSGDVYFATSNSAIQRAHYDSAKSPSWDVTTVVGGHVEVLVEGYNLGTSIDDVASFSVKGVECPTRRRESSNTLVCVLGDPAVTIDLGESVGTEDIVVQTASGGWTQGGYPGDFVDVKLADHSLKPIITRVEATGRAISPRALCFDSAGGTLYYSDLATRSLNRISLLDIGGDGGSILTAKVEFDAFLPDVGLVQGMAIDVSEGRHGGFVYLSDAQGGTISRVELPADGTRPEVPGAQQVLVSGLIDPMGIALEPDGGRGRLFYALRGGRICAVSRDGSISTSVPPTAVLLEGGGYEVRRFDSGTRLDGIAISASEGGGIDPTEIRLYWAESGRAPAIKRSTLDGTRPEDVPVEDDGTEAKGQLVWPRGLAFGAEASTGLLFGEYLGSVRLLPLPPAAGRLHTIAEADSYPAAVAIHALIAAAGREGAEERFFTHSVR 439
            GSGDVY+ATSNSAIQRAHYDSAKSPSW VTTVVGGHVEV VEGYNLGTSIDDV SFSVKGVECPTRRRESSNTLVC LGDPAVT DLGESVGTEDIVVQTASGGWTQGGYPGDFVD KLADHSLKPIITRVEATGR ISPRALCFDSAGGTLYYSDLATRSLNRISL D  GDGGS LTAKVEFDAFLPDVGLVQGMAIDVSEG++GGFVY SDAQGGTISRVELPADGTRPEVPGA+QVL SGLIDPMGIALEPDGGRGRLFYALRGGRICAVSRDGSISTSVPPTAVLLEGGGYEVRRFDSGTRLDGIAISASEGG +DPTEIRLYWAESGR PAIKRSTLDGTRPEDV VEDDGTEAKGQLVWPRGLAFGAEASTGLLFGEYLGSVRLLPLPPA G + TIAEADSYPAAVAIHAL+AAAGREGAEERFFTHSVR
Sbjct:   84 GSGDVYYATSNSAIQRAHYDSAKSPSWYVTTVVGGHVEVRVEGYNLGTSIDDVVSFSVKGVECPTRRRESSNTLVCALGDPAVTSDLGESVGTEDIVVQTASGGWTQGGYPGDFVDAKLADHSLKPIITRVEATGRTISPRALCFDSAGGTLYYSDLATRSLNRISL-DNSGDGGSTLTAKVEFDAFLPDVGLVQGMAIDVSEGQNGGFVYFSDAQGGTISRVELPADGTRPEVPGARQVLASGLIDPMGIALEPDGGRGRLFYALRGGRICAVSRDGSISTSVPPTAVLLEGGGYEVRRFDSGTRLDGIAISASEGGVLDPTEIRLYWAESGRTPAIKRSTLDGTRPEDVSVEDDGTEAKGQLVWPRGLAFGAEASTGLLFGEYLGSVRLLPLPPARGSVDTIAEADSYPAAVAIHALVAAAGREGAEERFFTHSVR 520
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig14150.3230.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KFF8_9PHAE2.720e-29394.06Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000033LDLR class B repeatSMARTSM00135LY_2coord: 131..173
e-value: 49.0
score: 4.3
coord: 239..282
e-value: 4.5
score: 13.0
coord: 306..349
e-value: 3.1
score: 14.3
IPR011042Six-bladed beta-propeller, TolB-likeGENE3D2.120.10.30coord: 117..290
e-value: 1.5E-10
score: 42.6
IPR013783Immunoglobulin-like foldGENE3D2.60.40.10coord: 25..115
e-value: 1.7E-5
score: 26.9
NoneNo IPR availableSUPERFAMILY63825YWTD domaincoord: 138..374

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig14150contigEcto-sp13_S_contig14150:628..2328 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig14150.3230.1mRNA_Ecto-sp13_S_contig14150.3230.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig14150 628..2328 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig14150.3230.1 ID=prot_Ecto-sp13_S_contig14150.3230.1|Name=mRNA_Ecto-sp13_S_contig14150.3230.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=440bp
KGSGDVYFATSNSAIQRAHYDSAKSPSWDVTTVVGGHVEVLVEGYNLGTS
IDDVASFSVKGVECPTRRRESSNTLVCVLGDPAVTIDLGESVGTEDIVVQ
TASGGWTQGGYPGDFVDVKLADHSLKPIITRVEATGRAISPRALCFDSAG
GTLYYSDLATRSLNRISLLDIGGDGGSILTAKVEFDAFLPDVGLVQGMAI
DVSEGRHGGFVYLSDAQGGTISRVELPADGTRPEVPGAQQVLVSGLIDPM
GIALEPDGGRGRLFYALRGGRICAVSRDGSISTSVPPTAVLLEGGGYEVR
RFDSGTRLDGIAISASEGGGIDPTEIRLYWAESGRAPAIKRSTLDGTRPE
DVPVEDDGTEAKGQLVWPRGLAFGAEASTGLLFGEYLGSVRLLPLPPAAG
RLHTIAEADSYPAAVAIHALIAAAGREGAEERFFTHSVR*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000033LDLR_classB_rpt
IPR0110426-blade_b-propeller_TolB-like
IPR013783Ig-like_fold