mRNA_Ecto-sp13_S_contig14117.3214.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig14117.3214.1
Unique NamemRNA_Ecto-sp13_S_contig14117.3214.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig14117.3214.1 vs. uniprot
Match: D7FJ46_ECTSI (Guanylyl cyclase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJ46_ECTSI)

HSP 1 Score: 120 bits (301), Expect = 3.380e-30
Identity = 58/59 (98.31%), Postives = 59/59 (100.00%), Query Frame = 1
Query:   10 LLQIINSYYSNLVNIVYSFGGDIIKIAGDALYCVFMPDEHDLRGAVLCAALCSMQLREV 186
            L+QIINSYYSNLVNIVYSFGGDIIKIAGDALYCVFMPDEHDLRGAVLCAALCSMQLREV
Sbjct:  168 LVQIINSYYSNLVNIVYSFGGDIIKIAGDALYCVFMPDEHDLRGAVLCAALCSMQLREV 226          
BLAST of mRNA_Ecto-sp13_S_contig14117.3214.1 vs. uniprot
Match: A0A6H5K5B4_9PHAE (Guanylate cyclase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5B4_9PHAE)

HSP 1 Score: 119 bits (299), Expect = 4.850e-30
Identity = 57/60 (95.00%), Postives = 59/60 (98.33%), Query Frame = 1
Query:    7 VLLQIINSYYSNLVNIVYSFGGDIIKIAGDALYCVFMPDEHDLRGAVLCAALCSMQLREV 186
            +L+ IINSYYSNLVNIVYSFGGDIIKIAGDALYCVFMPDEHDLRGAVLCAALCSMQLREV
Sbjct:  119 ILINIINSYYSNLVNIVYSFGGDIIKIAGDALYCVFMPDEHDLRGAVLCAALCSMQLREV 178          
BLAST of mRNA_Ecto-sp13_S_contig14117.3214.1 vs. uniprot
Match: A0A835YMU2_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YMU2_9STRA)

HSP 1 Score: 64.3 bits (155), Expect = 1.900e-10
Identity = 33/54 (61.11%), Postives = 39/54 (72.22%), Query Frame = 1
Query:   10 LLQIINSYYSNLVNIVYSFGGDIIKIAGDALYCVFMP----DEHDLRGAVLCAA 159
            L+ IINSYY+ LVN +Y+ GGDIIKIAGDALYC F+P       DLR A L A+
Sbjct:  125 LVTIINSYYTQLVNAIYAAGGDIIKIAGDALYCTFLPLKTESPKDLRPAALRAS 178          
BLAST of mRNA_Ecto-sp13_S_contig14117.3214.1 vs. uniprot
Match: A0A835YTW3_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YTW3_9STRA)

HSP 1 Score: 54.7 bits (130), Expect = 4.800e-7
Identity = 28/59 (47.46%), Postives = 38/59 (64.41%), Query Frame = 1
Query:   10 LLQIINSYYSNLVNIVYSFGGDIIKIAGDALYCVFMPDEH-DLRGAVLCAALCSMQLRE 183
            L+ +INS   +L+N+VY +GGD++K+AGDALYCVF      DL  A   A  C +  RE
Sbjct:  376 LVAVINSCMGSLMNLVYFYGGDVVKVAGDALYCVFPRARGGDLAHACRQAVACCVAARE 434          
BLAST of mRNA_Ecto-sp13_S_contig14117.3214.1 vs. uniprot
Match: L1IRU0_GUITC (Uncharacterized protein n=1 Tax=Guillardia theta (strain CCMP2712) TaxID=905079 RepID=L1IRU0_GUITC)

HSP 1 Score: 53.9 bits (128), Expect = 8.950e-7
Identity = 25/58 (43.10%), Postives = 42/58 (72.41%), Query Frame = 1
Query:   10 LLQIINSYYSNLVNIVYSFGGDIIKIAGDALYCVFMPDEHDLRGAVLCAALCSMQLRE 183
            + QI+N+Y+S L++IV+S GGD+IK AGDAL  ++   + DL  +   AA C+++++E
Sbjct:   26 ITQILNTYFSLLIDIVHSNGGDVIKFAGDALLALWDASDDDLLLSTCKAASCALRIQE 83          
BLAST of mRNA_Ecto-sp13_S_contig14117.3214.1 vs. uniprot
Match: A0A7S3MDI7_9STRA (Hypothetical protein (Fragment) n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3MDI7_9STRA)

HSP 1 Score: 53.1 bits (126), Expect = 1.610e-6
Identity = 28/59 (47.46%), Postives = 39/59 (66.10%), Query Frame = 1
Query:   25 NSYYSNLVNIVYSFGGDIIKIAGDALYCVF----MPDEHDLRGAVLCAAL-CSMQLREV 186
            N +   LVNI+YSFGGDIIK AGDA+ CVF      +E+++   V+  A+ C+  +REV
Sbjct:   53 NGFMGQLVNIIYSFGGDIIKFAGDAVVCVFASENFAEENEIPVDVILRAMHCARVIREV 111          
BLAST of mRNA_Ecto-sp13_S_contig14117.3214.1 vs. uniprot
Match: A0A7S3MCW6_9STRA (Hypothetical protein (Fragment) n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3MCW6_9STRA)

HSP 1 Score: 53.1 bits (126), Expect = 1.620e-6
Identity = 28/59 (47.46%), Postives = 39/59 (66.10%), Query Frame = 1
Query:   25 NSYYSNLVNIVYSFGGDIIKIAGDALYCVF----MPDEHDLRGAVLCAAL-CSMQLREV 186
            N +   LVNI+YSFGGDIIK AGDA+ CVF      +E+++   V+  A+ C+  +REV
Sbjct:   53 NGFMGQLVNIIYSFGGDIIKFAGDAVVCVFASENFAEENEIPVDVILRAMHCARVIREV 111          
BLAST of mRNA_Ecto-sp13_S_contig14117.3214.1 vs. uniprot
Match: A0A7Y4WPJ4_9PROT (Adenylate/guanylate cyclase domain-containing protein (Fragment) n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A7Y4WPJ4_9PROT)

HSP 1 Score: 48.9 bits (115), Expect = 1.960e-5
Identity = 23/54 (42.59%), Postives = 37/54 (68.52%), Query Frame = 1
Query:   22 INSYYSNLVNIVYSFGGDIIKIAGDALYCVF-MPDEHDLRGAVLCAALCSMQLR 180
            +N Y+S+LV++VY+ GGD++ IAGDA  C +   +E DL  A+L AA   + ++
Sbjct:   68 LNGYFSDLVDLVYAHGGDVLYIAGDAFLCYWPCEEEEDLPDAILRAAQAGLAIQ 121          
BLAST of mRNA_Ecto-sp13_S_contig14117.3214.1 vs. uniprot
Match: A0A432MGM4_9BACT (Adenylate/guanylate cyclase domain-containing protein n=1 Tax=Tautonia sociabilis TaxID=2080755 RepID=A0A432MGM4_9BACT)

HSP 1 Score: 49.3 bits (116), Expect = 3.850e-5
Identity = 22/58 (37.93%), Postives = 39/58 (67.24%), Query Frame = 1
Query:   10 LLQIINSYYSNLVNIVYSFGGDIIKIAGDALYCVFMP-DEHDLRGAVLCAALCSMQLR 180
            L +++N+Y+S L+ ++ + GGD++K+AGDAL  +F   DE  +R A L A  C + ++
Sbjct:   64 LSRLLNAYFSRLIALIEAHGGDVLKLAGDALVALFRSSDEEPIRNASLHAVQCGLAIQ 121          
BLAST of mRNA_Ecto-sp13_S_contig14117.3214.1 vs. uniprot
Match: A0A838RDD3_9CHLR (Adenylate/guanylate cyclase domain-containing protein (Fragment) n=1 Tax=Ardenticatenales bacterium TaxID=2614248 RepID=A0A838RDD3_9CHLR)

HSP 1 Score: 48.1 bits (113), Expect = 4.560e-5
Identity = 20/58 (34.48%), Postives = 38/58 (65.52%), Query Frame = 1
Query:   10 LLQIINSYYSNLVNIVYSFGGDIIKIAGDALYCVFMPDEHDLRGAVLCAALCSMQLRE 183
            L  ++N+Y+  LV++V + GGD++K AGDAL  ++   +  L  A   AA C++++++
Sbjct:   66 LTNLLNAYFGQLVDLVMTHGGDVVKFAGDALVALWPASDEPLSTAAQRAAQCAIEIQQ 123          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig14117.3214.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 11
Match NameE-valueIdentityDescription
D7FJ46_ECTSI3.380e-3098.31Guanylyl cyclase n=1 Tax=Ectocarpus siliculosus Ta... [more]
A0A6H5K5B4_9PHAE4.850e-3095.00Guanylate cyclase domain-containing protein n=1 Ta... [more]
A0A835YMU2_9STRA1.900e-1061.11Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835YTW3_9STRA4.800e-747.46Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
L1IRU0_GUITC8.950e-743.10Uncharacterized protein n=1 Tax=Guillardia theta (... [more]
A0A7S3MDI7_9STRA1.610e-647.46Hypothetical protein (Fragment) n=1 Tax=Spumella e... [more]
A0A7S3MCW6_9STRA1.620e-647.46Hypothetical protein (Fragment) n=1 Tax=Spumella e... [more]
A0A7Y4WPJ4_9PROT1.960e-542.59Adenylate/guanylate cyclase domain-containing prot... [more]
A0A432MGM4_9BACT3.850e-537.93Adenylate/guanylate cyclase domain-containing prot... [more]
A0A838RDD3_9CHLR4.560e-534.48Adenylate/guanylate cyclase domain-containing prot... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig14117contigEcto-sp13_S_contig14117:288..485 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start0
Seed ortholog score120.6
Seed ortholog evalue2.8e-25
Seed eggNOG ortholog2880.D7FJ46
Model size198
Hectar predicted targeting categoryother localisation
Exons1
EggNOG free text desc.Adenylate cyclase
EggNOG OGs2QPPT@2759,COG2114@1
Cds size198
COG Functional cat.T
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462754.8581452-CDS-Ecto-sp13_S_contig14117:287..4851681462754.8581452-CDS-Ecto-sp13_S_contig14117:287..485Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14117 288..485 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig14117.3214.1prot_Ecto-sp13_S_contig14117.3214.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig14117 288..485 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig14117.3214.1

>prot_Ecto-sp13_S_contig14117.3214.1 ID=prot_Ecto-sp13_S_contig14117.3214.1|Name=mRNA_Ecto-sp13_S_contig14117.3214.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=66bp
AAVLLQIINSYYSNLVNIVYSFGGDIIKIAGDALYCVFMPDEHDLRGAVL
CAALCSMQLREVGFA*
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mRNA from alignment at Ecto-sp13_S_contig14117:288..485+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig14117.3214.1 ID=mRNA_Ecto-sp13_S_contig14117.3214.1|Name=mRNA_Ecto-sp13_S_contig14117.3214.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=198bp|location=Sequence derived from alignment at Ecto-sp13_S_contig14117:288..485+ (Ectocarpus species13 EcNAP12_S_4_19m)
GCCGCTGTGCTATTACAGATAATCAACAGCTACTATTCGAACTTGGTAAA TATTGTCTATTCCTTCGGCGGTGACATCATCAAGATCGCGGGGGACGCGC TGTACTGCGTGTTTATGCCCGACGAACACGACCTGAGGGGAGCAGTGTTG TGTGCGGCCTTGTGCAGCATGCAGCTTCGGGAGGTGGGTTTTGCTTGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig14117:288..485+

>mRNA_Ecto-sp13_S_contig14117.3214.1 ID=mRNA_Ecto-sp13_S_contig14117.3214.1|Name=mRNA_Ecto-sp13_S_contig14117.3214.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=198bp|location=Sequence derived from alignment at Ecto-sp13_S_contig14117:288..485+ (Ectocarpus species13 EcNAP12_S_4_19m)
GCCGCTGTGCTATTACAGATAATCAACAGCTACTATTCGAACTTGGTAAA
TATTGTCTATTCCTTCGGCGGTGACATCATCAAGATCGCGGGGGACGCGC
TGTACTGCGTGTTTATGCCCGACGAACACGACCTGAGGGGAGCAGTGTTG
TGTGCGGCCTTGTGCAGCATGCAGCTTCGGGAGGTGGGTTTTGCTTGA
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