mRNA_Ecto-sp13_S_contig14104.3205.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig14104.3205.1
Unique NamemRNA_Ecto-sp13_S_contig14104.3205.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig14104.3205.1 vs. uniprot
Match: D7FV69_ECTSI (DPH-type MB domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FV69_ECTSI)

HSP 1 Score: 180 bits (457), Expect = 3.860e-52
Identity = 91/99 (91.92%), Postives = 91/99 (91.92%), Query Frame = 2 
Query:  107 MSAVVYEEVALEEMVYNDSEQMYYYECPCGDKFEISLEDLYDGEDIAPCPSCTLQIKVLFEESELPELRPEEXXXXX-GHDSRGGGPVVVASTLVEAHA 400
            MSAVVYEEVALEEMVYNDSEQMYYYECPCGDKFEISLEDLYDGEDIAPCPSCTLQIKVLFEESELPELRPEE      GHDSRGG PVVVASTLVEA A
Sbjct:    1 MSAVVYEEVALEEMVYNDSEQMYYYECPCGDKFEISLEDLYDGEDIAPCPSCTLQIKVLFEESELPELRPEEEKEEEHGHDSRGGEPVVVASTLVEAQA 99
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BLAST of mRNA_Ecto-sp13_S_contig14104.3205.1 vs. uniprot
Match: A0A662X3X8_9STRA (DPH-type MB domain-containing protein n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662X3X8_9STRA)

HSP 1 Score: 106 bits (265), Expect = 1.410e-24
Identity = 47/68 (69.12%), Postives = 57/68 (83.82%), Query Frame = 2 
Query:  119 VYEEVALEEMVYNDSEQMYYYECPCGDKFEISLEDLYDGEDIAPCPSCTLQIKVLFEESELPELRPEE 322
            VY+EV +E+M +N  EQ YYY CPCGDKF I+LEDLYDGEDIA CPSC+L I+V+F+E ELPEL+ EE
Sbjct:    3 VYDEVEIEDMEFNAEEQAYYYPCPCGDKFVIALEDLYDGEDIASCPSCSLTIRVVFDEDELPELKEEE 70
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BLAST of mRNA_Ecto-sp13_S_contig14104.3205.1 vs. uniprot
Match: A0A662Y1E6_9STRA (DPH-type MB domain-containing protein n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662Y1E6_9STRA)

HSP 1 Score: 106 bits (265), Expect = 2.890e-24
Identity = 47/68 (69.12%), Postives = 57/68 (83.82%), Query Frame = 2 
Query:  119 VYEEVALEEMVYNDSEQMYYYECPCGDKFEISLEDLYDGEDIAPCPSCTLQIKVLFEESELPELRPEE 322
            VY+EV +E+M +N  EQ YYY CPCGDKF I+LEDLYDGEDIA CPSC+L I+V+F+E ELPEL+ EE
Sbjct:   27 VYDEVEIEDMEFNAEEQAYYYPCPCGDKFVIALEDLYDGEDIASCPSCSLTIRVVFDEGELPELKEEE 94
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BLAST of mRNA_Ecto-sp13_S_contig14104.3205.1 vs. uniprot
Match: A0A6A4D2K3_9STRA (DPH-type MB domain-containing protein n=3 Tax=Phytophthora TaxID=4783 RepID=A0A6A4D2K3_9STRA)

HSP 1 Score: 103 bits (257), Expect = 3.210e-23
Identity = 48/84 (57.14%), Postives = 61/84 (72.62%), Query Frame = 2 
Query:  113 AVVYEEVALEEMVYNDSEQMYYYECPCGDKFEISLEDLYDGEDIAPCPSCTLQIKVLFEESELPELRPEEXXXXXGHDSRGGGP 364
            A VY+EV +E+M ++  EQ+YYY CPCGD+F I LE+LYDGEDIA CPSC+L I+V+F+E  LPEL+ EE       D   GGP
Sbjct:    2 AAVYDEVEIEDMEFDAEEQVYYYPCPCGDRFSIDLEELYDGEDIATCPSCSLTIRVVFDEENLPELKEEEDA-----DMDTGGP 80
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BLAST of mRNA_Ecto-sp13_S_contig14104.3205.1 vs. uniprot
Match: G4YJ90_PHYSP (DPH-type MB domain-containing protein n=12 Tax=Phytophthora TaxID=4783 RepID=G4YJ90_PHYSP)

HSP 1 Score: 102 bits (255), Expect = 3.460e-23
Identity = 44/70 (62.86%), Postives = 57/70 (81.43%), Query Frame = 2 
Query:  113 AVVYEEVALEEMVYNDSEQMYYYECPCGDKFEISLEDLYDGEDIAPCPSCTLQIKVLFEESELPELRPEE 322
            A VY+EV +E+M ++  EQ+YYY CPCGD+F I LE+LYDGEDIA CPSC+L I+V+F+E  LPEL+ EE
Sbjct:    2 AAVYDEVEIEDMEFDAEEQVYYYPCPCGDRFSIDLEELYDGEDIATCPSCSLTIRVIFDEETLPELKEEE 71
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BLAST of mRNA_Ecto-sp13_S_contig14104.3205.1 vs. uniprot
Match: A0A835Z4X0_9STRA (Diphthamide biosynthesis protein 3 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z4X0_9STRA)

HSP 1 Score: 102 bits (254), Expect = 6.340e-23
Identity = 47/70 (67.14%), Postives = 57/70 (81.43%), Query Frame = 2 
Query:  113 AVVYEEVALEEMVYNDSEQMYYYECPCGDKFEISLEDLYDGEDIAPCPSCTLQIKVLFEESELPELRPEE 322
            +VVYEEVAL +M ++ +EQMY Y CPCGD FEISLEDL DGEDIAPCPSCTL+I+VL++   LP L+  E
Sbjct:    4 SVVYEEVALADMTFDAAEQMYTYSCPCGDLFEISLEDLLDGEDIAPCPSCTLRIRVLYDMESLPPLQQPE 73
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BLAST of mRNA_Ecto-sp13_S_contig14104.3205.1 vs. uniprot
Match: K3WTP3_GLOUD (DPH-type MB domain-containing protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WTP3_GLOUD)

HSP 1 Score: 100 bits (250), Expect = 1.590e-22
Identity = 42/68 (61.76%), Postives = 58/68 (85.29%), Query Frame = 2 
Query:  119 VYEEVALEEMVYNDSEQMYYYECPCGDKFEISLEDLYDGEDIAPCPSCTLQIKVLFEESELPELRPEE 322
            VY+EV +E+M Y+  EQ+YYY CPCGDKF I+L++LYDGEDIA CPSC+L ++V+FEE +LPEL+ ++
Sbjct:    3 VYDEVEIEDMEYDAEEQVYYYPCPCGDKFFITLDELYDGEDIATCPSCSLTLRVVFEEDDLPELKDDD 70
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BLAST of mRNA_Ecto-sp13_S_contig14104.3205.1 vs. uniprot
Match: A0A7S2W7Y0_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2W7Y0_9STRA)

HSP 1 Score: 100 bits (248), Expect = 8.170e-22
Identity = 48/87 (55.17%), Postives = 65/87 (74.71%), Query Frame = 2 
Query:  119 VYEEVALEEMVYNDSEQMYYYECPCGDKFEISLEDLYDGEDIAPCPSCTLQIKVLFEESELPELRPEEXXXXXGHDSRGGGPVVVAS 379
            VYEEV L++M Y+++  M++Y+CPCGD FEISLE+L+DGEDIAPCPSC+L+I+VL+EE +LP L P          S+   PVV A+
Sbjct:    3 VYEEVQLKDMRYDEANLMFFYQCPCGDLFEISLEELHDGEDIAPCPSCSLKIRVLYEEEDLPAL-PTGANAPAERSSKPLPPVVAAA 88
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BLAST of mRNA_Ecto-sp13_S_contig14104.3205.1 vs. uniprot
Match: A0A6G0XMQ2_9STRA (DPH-type MB domain-containing protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XMQ2_9STRA)

HSP 1 Score: 99.0 bits (245), Expect = 9.900e-22
Identity = 41/68 (60.29%), Postives = 56/68 (82.35%), Query Frame = 2 
Query:  119 VYEEVALEEMVYNDSEQMYYYECPCGDKFEISLEDLYDGEDIAPCPSCTLQIKVLFEESELPELRPEE 322
            VY+E+ +E+M+Y++ EQ+Y Y CPCGD F I+L++LYDGEDI  CPSC+L I+V+F+E  LPELR EE
Sbjct:    3 VYDEIEIEDMMYDEKEQIYTYPCPCGDNFFITLQELYDGEDIGTCPSCSLTIRVIFDEDNLPELREEE 70
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BLAST of mRNA_Ecto-sp13_S_contig14104.3205.1 vs. uniprot
Match: A0A1V9ZHU1_9STRA (Diphthamide biosynthesis protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9ZHU1_9STRA)

HSP 1 Score: 98.2 bits (243), Expect = 1.630e-21
Identity = 40/68 (58.82%), Postives = 57/68 (83.82%), Query Frame = 2 
Query:  119 VYEEVALEEMVYNDSEQMYYYECPCGDKFEISLEDLYDGEDIAPCPSCTLQIKVLFEESELPELRPEE 322
            VY+EV +E+M ++++EQ+YYY CPCGDKF I L++LYDGEDIA CPSC+L I+++F+E  LP LR ++
Sbjct:    3 VYDEVEIEDMEFDEAEQIYYYPCPCGDKFFIGLDELYDGEDIASCPSCSLTIRIIFDEDALPPLREDD 70
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig14104.3205.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FV69_ECTSI3.860e-5291.92DPH-type MB domain-containing protein n=2 Tax=Ecto... [more]
A0A662X3X8_9STRA1.410e-2469.12DPH-type MB domain-containing protein n=1 Tax=Noth... [more]
A0A662Y1E6_9STRA2.890e-2469.12DPH-type MB domain-containing protein n=1 Tax=Noth... [more]
A0A6A4D2K3_9STRA3.210e-2357.14DPH-type MB domain-containing protein n=3 Tax=Phyt... [more]
G4YJ90_PHYSP3.460e-2362.86DPH-type MB domain-containing protein n=12 Tax=Phy... [more]
A0A835Z4X0_9STRA6.340e-2367.14Diphthamide biosynthesis protein 3 n=1 Tax=Tribone... [more]
K3WTP3_GLOUD1.590e-2261.76DPH-type MB domain-containing protein n=1 Tax=Glob... [more]
A0A7S2W7Y0_9STRA8.170e-2255.17Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A6G0XMQ2_9STRA9.900e-2260.29DPH-type MB domain-containing protein n=1 Tax=Apha... [more]
A0A1V9ZHU1_9STRA1.630e-2158.82Diphthamide biosynthesis protein n=1 Tax=Achlya hy... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig14104contigEcto-sp13_S_contig14104:2427..4510 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score179.9
Seed ortholog evalue5.9e-43
Seed eggNOG ortholog2880.D7FV69
Preferred nameDPH3
Model size1426
KEGG rclassRC00004,RC00027,RC00627,RC02742,RC02744,RC02882
KEGG koko:K00162,ko:K15455
KEGG ReactionR00014,R00209,R01699,R03270
KEGG Pathwayko00010,ko00020,ko00620,ko01100,ko01110,ko01120,ko01130,ko01200,ko04066,ko04922,ko05230,map00010,map00020,map00620,map01100,map01110,map01120,map01130,map01200,map04066,map04922,map05230
KEGG ModuleM00307
Hectar predicted targeting categoryother localisation
GOsGO:0002097,GO:0002098,GO:0002791,GO:0002792,GO:0003674,GO:0003824,GO:0005488,GO:0005506,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005829,GO:0006091,GO:0006139,GO:0006396,GO:0006399,GO:0006400,GO:0006417,GO:0006448,GO:0006464,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0008270,GO:0009055,GO:0009058,GO:0009451,GO:0009889,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0010608,GO:0016070,GO:0016491,GO:0017182,GO:0017183,GO:0018193,GO:0018202,GO:0019222,GO:0019538,GO:0022900,GO:0031323,GO:0031326,GO:0031974,GO:0031981,GO:0032268,GO:0032879,GO:0032880,GO:0034248,GO:0034470,GO:0034641,GO:0034660,GO:0036211,GO:0043167,GO:0043169,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043412,GO:0044093,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0046483,GO:0046872,GO:0046914,GO:0048519,GO:0048523,GO:0050708,GO:0050709,GO:0050789,GO:0050794,GO:0051046,GO:0051048,GO:0051049,GO:0051051,GO:0051098,GO:0051099,GO:0051171,GO:0051223,GO:0051224,GO:0051246,GO:0055114,GO:0060255,GO:0065007,GO:0065009,GO:0070013,GO:0070201,GO:0071704,GO:0080090,GO:0090087,GO:0090304,GO:1900247,GO:1901360,GO:1901564,GO:1903530,GO:1903531,GO:1904950,GO:2000112,GO:2000765
Exons2
EggNOG free text desc.peptidyl-diphthamide biosynthetic process from peptidyl-histidine
EggNOG OGsCOG5216@1,KOG2923@2759
Ec32 ortholog descriptionZinc finger, DPH-type
Ec32 orthologEc-12_007340.1
EC1.2.4.1
Cds size297
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEbr01601,ko00000,ko00001,ko00002,ko01000,ko03012,ko03016
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462754.3880327-UTR-Ecto-sp13_S_contig14104:2426..25321681462754.3880327-UTR-Ecto-sp13_S_contig14104:2426..2532Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig14104 2427..2532 +
1681462754.4142776-UTR-Ecto-sp13_S_contig14104:3487..45101681462754.4142776-UTR-Ecto-sp13_S_contig14104:3487..4510Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig14104 3488..4510 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462754.398194-CDS-Ecto-sp13_S_contig14104:2532..27181681462754.398194-CDS-Ecto-sp13_S_contig14104:2532..2718Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14104 2533..2718 +
1681462754.4062128-CDS-Ecto-sp13_S_contig14104:3376..34871681462754.4062128-CDS-Ecto-sp13_S_contig14104:3376..3487Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14104 3377..3487 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig14104.3205.1prot_Ecto-sp13_S_contig14104.3205.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig14104 2533..3487 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig14104.3205.1

>prot_Ecto-sp13_S_contig14104.3205.1 ID=prot_Ecto-sp13_S_contig14104.3205.1|Name=mRNA_Ecto-sp13_S_contig14104.3205.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=99bp
MSAVVYEEVALEEMVYNDSEQMYYYECPCGDKFEISLEDLYDGEDIAPCP
SCTLQIKVLFEESELPELRPEEEEEEHGHDSRGGGPVVVASTLVEAHA*
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mRNA from alignment at Ecto-sp13_S_contig14104:2427..4510+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig14104.3205.1 ID=mRNA_Ecto-sp13_S_contig14104.3205.1|Name=mRNA_Ecto-sp13_S_contig14104.3205.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2084bp|location=Sequence derived from alignment at Ecto-sp13_S_contig14104:2427..4510+ (Ectocarpus species13 EcNAP12_S_4_19m)
CTTGAGAGTCACGCGACCACAGACGAAACGCTGGGCCCGGCACACGCCAA
CAACGAGTCACCAACCCATCACATCACTTCTCCGATCTCTTATACGAGGG
GCGACCATGTCCGCGGTTGTTTACGAAGAAGTGGCGCTGGAGGAGATGGT
GTACAACGACTCGGAGCAGATGTACTACTACGAGTGCCCCTGTGGCGACA
AGTTCGAGATCTCCCTCGAGGATCTATACGACGGAGAGGACATCGCGCCG
TGTCCCAGCTGCACGCTGCAAATCAAGGTCCTCTTCGAAGAGGTCAGTGT
GTGTGTGTGTGCGGATGCTGTTTGTATGTCTGTTGTTTTTGCTGCTGAGG
ATGGGACTACAGCAGTACTTCAGCAAGTAAATGGTAATCGTAGAGCCCTG
TCTCATGTCAGCGTAACCGTGGCATCCTCACCGCCACCCCGTCTCTGCTG
CTGTGGCCCTCACTACTGTGGATTCGGTCTGGTGCACAGGGATGATAGAT
GATATGGGTTTTGGTAGCAACGTTTTTTTCCACGTGTTGTTCGCCCTAAG
GTGTGGCAACATGCTCCTAGCTATTGTCGGGCCCGACGTGCACTTGACAA
CCGTTCAGGTCATACGCCCCCACGAGATACTCCGCATTTCTCGTCATTAC
TTATTGGCAATGTGGAGCTATCAGACGTTACGTATTTTTTACTGCAAGTT
AGACCTCTGCCCTACTGACACCAAAAACACAGGCCATCCAGATATAGCAT
CAACACGTGTTTTTCGCACGAACAGCAGCACCACCCTCTACTGAAGCTAC
GCCGCTGGTGCAGTCCCCAACCACAGGCCCAACGGATCGGTGGCAGTCGC
ACTCCACTGACAAGCTACGTAGCCCGGCCTCTGTATGGCCTGACCCCGTC
CCCCTCAACCTGTACCCTGTACCTGTTGCTCCTTCGTTGGGAACCACTAG
AGCGAACTCCCGGAGCTGAGACCAGAGGAAGAAGAGGAAGAGCATGGGCA
CGATAGCCGAGGAGGCGGCCCGGTTGTCGTGGCATCGACGCTCGTAGAGG
CGCATGCGTAGGAGTCCACCCGGCGTACCGTCTTTCATTTTGGTTGAAGT
GTCTCTCTTGCTGCCTTGGAAAGTTTCTGCTCCACCCTGACCTTTTGATG
TTTAATTGTCTCTCTATGTATGGTGAACCTAGAAGGGATTTGCCGCTTTC
GAAACCCACTGGGTGCGGGCGACATCGATGGCGGCGTAGCAAATGCCACC
TCTGGAGTCTTCGGTTTGGCGCAGGGTAGGCGAGTCCGGGGAAGCCCCCG
GCATCCCCACCCCTTGCGGCGTACCTCGTTGTTGCTGTTATTGAAGCGTA
CCAAGTGTCATTCCCATAAGTTATTTATGTTTTGTAGATAAAAGTGTTGG
TGTGCTTCGTACCGCTCTGCAGCTGCTTCCTCGCTGGCCCCTGCCTCACA
TGATTACGAACGGCCCAACCCCCAACGCCCCCTGCGAGTCATGGGTAAAG
GAGCCCAAGGTTCTCCGCTGCCACCCCGTGGAAAACATCCACCAGCAGAT
TTTGGTGGTGATGGGCAGGAGCAGGAGGGAGGCGACGTTGGACGAGTGGC
TGTCGCAGCATGCGACGACCGTCGTTTTGGGTGTGTTGATGTAATTTGCT
GTGTTTAGACCCATGTTTATGGTCACCAAATCTTTGAAAAAAATCTTCAA
ATGTTTCCAAACATCTGCGCGCGAATATCTGCCAGAGGAACATTTGAGTA
CCGTTTTTATGCGCAAAAATATCTGATCGTGTGGTTTTCTCGTAATGCAT
CAGAAATGCGGCGGGAATCGTGGTCTACTGCTACCAAACGAGTTGTGACA
GACAAATTACAAATGCGTCAGAGAAACTGAAAGTAACGAGCTCGCAAAGG
GCTCCCCACAACCCTTGATTCACTGAGCTGATGCTGTGCCCGCCGACATG
TGGCGATAGCGGTCCGGGCGTGCGAGAAAAAATGTTCTCGGTGTCAAAAA
GAGACCAAAACGTGCGTCAGCGCTTCCCAACGGCAAAAAGTCGGCCGCTT
GAGAGGACACGTTAGTACAAAACTATCCAGCTCT
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig14104:2427..4510+

>mRNA_Ecto-sp13_S_contig14104.3205.1 ID=mRNA_Ecto-sp13_S_contig14104.3205.1|Name=mRNA_Ecto-sp13_S_contig14104.3205.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=297bp|location=Sequence derived from alignment at Ecto-sp13_S_contig14104:2427..4510+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTCCGCGGTTGTTTACGAAGAAGTGGCGCTGGAGGAGATGGTGTACAA
CGACTCGGAGCAGATGTACTACTACGAGTGCCCCTGTGGCGACAAGTTCG
AGATCTCCCTCGAGGATCTATACGACGGAGAGGACATCGCGCCGTGTCCC
AGCTGCACGCTGCAAATCAAGGTCCTCTTCGAAGAGAGCGAACTCCCGGA
GCTGAGACCAGAGGAAGAAGAGGAAGAGCATGGGCACGATAGCCGAGGAG
GCGGCCCGGTTGTCGTGGCATCGACGCTCGTAGAGGCGCATGCGTAG
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