prot_Ecto-sp13_S_contig14092.3198.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig14092.3198.1
Unique Nameprot_Ecto-sp13_S_contig14092.3198.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length453
Homology
BLAST of mRNA_Ecto-sp13_S_contig14092.3198.1 vs. uniprot
Match: D8LRY3_ECTSI (DNA-directed RNA polymerase subunit n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LRY3_ECTSI)

HSP 1 Score: 811 bits (2096), Expect = 5.700e-276
Identity = 424/428 (99.07%), Postives = 425/428 (99.30%), Query Frame = 0
Query:    1 MCGVLAAQSIGEPITQMTLNTFHFAGVSAKNVTLGVPRVKEIINVAKNVRTPSLTIYLEERAAGADEAEGQEVAKRVVDILEYVTLGDITTSTQIYYDPDPRSTVVDEDVELLEGHFDIQEEEEDDKDTDRARPWLLRMELNREAVFDKRLDVVEIAKRVVAYFDGGLHVIRSDQNSEKLVLRIRVLDDVPDKIEAEPEAEDTAEADDVAMLKHLEKNLLRLQLSGIAGISKVYMSEVTKPRFDEINGFAQRHKEWVLETDGTNLMAALCAEQIDPRRTVSNDVVECCTVLGIEGARGSLLKEFRAVVERDGSYVNYRHLSTLIDVMTFRGHLMAITRHGINRVDNGPMLRSSFEETVEILMEAAVFAEADNLKGVTDNIMLGQASFANLGTGTMDLLLDESKLSQAMELTQLDTTMARLSGAAGSGA 428
            MCGVLAAQSIGEPITQMTLNTFHFAGVSAKNVTLGVPRVKEIINVAKNVRTPSLTIYLEERAAGADEAEGQEVAKRVVDILEYVTLGDITTSTQIYYDPDPRSTVVDEDVELLEGHFDIQEEEEDDKDTDRARPWLLRMELNREAVFDKRLDVVEIAKRVVAYFDGGLHVIRSDQNSEKLVLRIRVLDDVPDKIEAEPEAED AEADDVAMLKHLEKNLLRLQLSGIAGISKVYMSEVTKP+FDEINGFAQRHKEWVLETDGTNLMAALCAEQIDPRRTVSNDVVECCTVLGIEGARGSLLKEFRAVVERDGSYVNYRHLSTLIDVMTFRGHLMAITRHGINRVDNGPMLRSSFEETVEILMEAAVFAEADNLKGVTDNIMLGQ  FANLGTGTMDLLLDESKLSQAMELTQLDTTMARLSGAAGSGA
Sbjct: 1121 MCGVLAAQSIGEPITQMTLNTFHFAGVSAKNVTLGVPRVKEIINVAKNVRTPSLTIYLEERAAGADEAEGQEVAKRVVDILEYVTLGDITTSTQIYYDPDPRSTVVDEDVELLEGHFDIQEEEEDDKDTDRARPWLLRMELNREAVFDKRLDVVEIAKRVVAYFDGGLHVIRSDQNSEKLVLRIRVLDDVPDKIEAEPEAEDMAEADDVAMLKHLEKNLLRLQLSGIAGISKVYMSEVTKPKFDEINGFAQRHKEWVLETDGTNLMAALCAEQIDPRRTVSNDVVECCTVLGIEGARGSLLKEFRAVVERDGSYVNYRHLSTLIDVMTFRGHLMAITRHGINRVDNGPMLRSSFEETVEILMEAAVFAEADNLKGVTDNIMLGQ--FANLGTGTMDLLLDESKLSQAMELTQLDTTMARLSGAAGSGA 1546          
BLAST of mRNA_Ecto-sp13_S_contig14092.3198.1 vs. uniprot
Match: A0A6H5L9Y2_9PHAE (DNA-directed RNA polymerase subunit n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L9Y2_9PHAE)

HSP 1 Score: 743 bits (1919), Expect = 8.250e-254
Identity = 384/385 (99.74%), Postives = 384/385 (99.74%), Query Frame = 0
Query:    1 MCGVLAAQSIGEPITQMTLNTFHFAGVSAKNVTLGVPRVKEIINVAKNVRTPSLTIYLEERAAGADEAEGQEVAKRVVDILEYVTLGDITTSTQIYYDPDPRSTVVDEDVELLEGHFDIQEEEEDDKDTDRARPWLLRMELNREAVFDKRLDVVEIAKRVVAYFDGGLHVIRSDQNSEKLVLRIRVLDDVPDKIEAEPEAEDTAEADDVAMLKHLEKNLLRLQLSGIAGISKVYMSEVTKPRFDEINGFAQRHKEWVLETDGTNLMAALCAEQIDPRRTVSNDVVECCTVLGIEGARGSLLKEFRAVVERDGSYVNYRHLSTLIDVMTFRGHLMAITRHGINRVDNGPMLRSSFEETVEILMEAAVFAEADNLKGVTDNIMLGQA 385
            MCGVLAAQSIGEPITQMTLNTFHFAGVSAKNVTLGVPRVKEIINVAKNVRTPSLTIYLEERAAGADEAEGQEVAKRVVDILEYVTLGDITTSTQIYYDPDPRSTVVDEDVELLEGHFDIQEEEEDDKDTDRARPWLLRMELNREAVFDKRLDVVEIAKRVVAYFDGGLHVIRSDQNSEKLVLRIRVLDDVPDK EAEPEAEDTAEADDVAMLKHLEKNLLRLQLSGIAGISKVYMSEVTKPRFDEINGFAQRHKEWVLETDGTNLMAALCAEQIDPRRTVSNDVVECCTVLGIEGARGSLLKEFRAVVERDGSYVNYRHLSTLIDVMTFRGHLMAITRHGINRVDNGPMLRSSFEETVEILMEAAVFAEADNLKGVTDNIMLGQA
Sbjct: 1122 MCGVLAAQSIGEPITQMTLNTFHFAGVSAKNVTLGVPRVKEIINVAKNVRTPSLTIYLEERAAGADEAEGQEVAKRVVDILEYVTLGDITTSTQIYYDPDPRSTVVDEDVELLEGHFDIQEEEEDDKDTDRARPWLLRMELNREAVFDKRLDVVEIAKRVVAYFDGGLHVIRSDQNSEKLVLRIRVLDDVPDKTEAEPEAEDTAEADDVAMLKHLEKNLLRLQLSGIAGISKVYMSEVTKPRFDEINGFAQRHKEWVLETDGTNLMAALCAEQIDPRRTVSNDVVECCTVLGIEGARGSLLKEFRAVVERDGSYVNYRHLSTLIDVMTFRGHLMAITRHGINRVDNGPMLRSSFEETVEILMEAAVFAEADNLKGVTDNIMLGQA 1506          
BLAST of mRNA_Ecto-sp13_S_contig14092.3198.1 vs. uniprot
Match: A0A836CHC4_9STRA (DNA-directed RNA polymerase subunit n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CHC4_9STRA)

HSP 1 Score: 532 bits (1371), Expect = 5.850e-171
Identity = 287/427 (67.21%), Postives = 331/427 (77.52%), Query Frame = 0
Query:    1 MCGVLAAQSIGEPITQMTLNTFHFAGVSAKNVTLGVPRVKEIINVAKNVRTPSLTIYLEERAAGADEAEGQEVAKRVVDILEYVTLGDITTSTQIYYDPDPRSTVVDEDVELLEGHFDIQEEEEDDKDTDRARPWLLRMELNREAVFDKRLDVVEIAKRVVAYFDGGLHVIRSDQNSEKLVLRIRVLDDVPDKIEAEPEA-EDTAEADDVAMLKHLEKNLLRLQLSGIAGISKVYMSEVTKPRFDEINGFAQRHKEWVLETDGTNLMAALCAEQIDPRRTVSNDVVECCTVLGIEGARGSLLKEFRAVVERDGSYVNYRHLSTLIDVMTFRGHLMAITRHGINRVDNGPMLRSSFEETVEILMEAAVFAEADNLKGVTDNIMLGQASFANLGTGTMDLLLDESKLSQAMELTQLDTTMARLSGAAGS 426
            MCGVLAAQSIGEPITQMTLNTFH+AGVSAKNVTLGVPRVKEIINVA N RTPSLTIYL       D  + QE AKRVVD+LEY+TL D+T STQIYYDPDPR T+++ED E +E   DI   E DD + DRA PWLLR+EL +E  F K L +  IA+++   +   LH+I SD N++K VLR+RV+DD  D  + +P + E+   ADDVA LK LEKNLL LQL GI  I+KVYM E T+P FD   GF QR  EW+LETDGTNLMA LC   +D RRTVSNDVVEC +V GIEGAR SLL+EFRAVVERDGSYVNYRHL TL+DVMTFRG+LMAITRHGINRVDNGPMLRSSFEETVEILMEAA+FAE+DNLKGVTDNIMLGQ   A +GTG MDLLLDE +L  A+   +LD  ++++    GS
Sbjct: 1113 MCGVLAAQSIGEPITQMTLNTFHYAGVSAKNVTLGVPRVKEIINVAANPRTPSLTIYL-----SPDSEQDQESAKRVVDMLEYITLADVTVSTQIYYDPDPRDTIIEEDKECVEAFLDI---ETDDFNADRASPWLLRIELKKEVAFVKGLMIGSIARKITDDYGSALHIISSDDNADKQVLRLRVMDD-DDGEKVDPSSGEEVVRADDVAFLKRLEKNLLVLQLGGIDNINKVYMQEGTRPVFDPDKGF-QRETEWLLETDGTNLMAVLCCPNVDHRRTVSNDVVECLSVFGIEGARMSLLREFRAVVERDGSYVNYRHLGTLVDVMTFRGYLMAITRHGINRVDNGPMLRSSFEETVEILMEAAMFAESDNLKGVTDNIMLGQ--LAQVGTGCMDLLLDEERLKDAVNTKELDAALSKVGINVGS 1527          
BLAST of mRNA_Ecto-sp13_S_contig14092.3198.1 vs. uniprot
Match: A0A6A5AD01_9STRA (DNA-directed RNA polymerase n=2 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A6A5AD01_9STRA)

HSP 1 Score: 424 bits (1091), Expect = 2.020e-140
Identity = 232/411 (56.45%), Postives = 298/411 (72.51%), Query Frame = 0
Query:    1 MCGVLAAQSIGEPITQMTLNTFHFAGVSAKNVTLGVPRVKEIINVAKNVRTPSLTIYLEERAAGADEAEGQEVAKRVVDILEYVTLGDITTSTQIYYDPDPRSTVVDEDVELLEGHFDIQEEEEDDKDTDRAR-PWLLRMELNREAVFDKRLDVVEIAKRVVAYFDGGLHVIRSDQNSEKLVLRIRVLDDVPDKIEAEPEAEDTAEADDVAMLKHLEKNLL-RLQLSGIAGISKVYMSEVTKPRFDEINGFAQRHKEWVLETDGTNLMAALCAEQIDPRRTVSNDVVECCTVLGIEGARGSLLKEFRAVVERDGSYVNYRHLSTLIDVMTFRGHLMAITRHGINRVDNGPMLRSSFEETVEILMEAAVFAEADNLKGVTDNIMLGQASFANLGTGTMDLLLDESKLSQAME 409
            M GV+AAQSIGEP TQMTLNTFH+AGVSAKNVTLGVPR+KEIIN+AK+V+TPS+ IYL+      D A   E AK++   LEY TL D+T ST IYYDPDP STVV+ED + +  ++D+      D+DT  AR PWLLR+ELNR  + DK L++ EIA ++   +   L  I +D N++KLVLRIR++ +  DK+     A  +   +D   LK +E N+L +++L G+  + KV+M E  + ++DE  GF    KEWVL+TDGTNL+  +C E ID  RT+SND+VE   VLGIE  R +LL E R V+  DG+YVNYRHL+ L DVMTFRGHLMA+TRHGINRVD+GP++R SFEETVEILM+AA+F++ D L GVT+NIMLGQ   A LGTG MDL+LD +KLSQA+E
Sbjct:   24 MAGVVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLKEIINIAKDVKTPSIQIYLK-----PDCAHDAEKAKQIQSTLEYTTLMDVTASTAIYYDPDPTSTVVEEDADFVASYYDVI-----DEDTPLARSPWLLRIELNRIMMADKNLEMKEIALQIENEYGQDLSCIYTDDNADKLVLRIRIMSEEEDKVSQNGSA--SVGQEDDTFLKRVEHNMLTQMRLRGVPNVKKVFMRENPQNQWDEEKGFIMV-KEWVLDTDGTNLLDIICHESIDASRTISNDIVEIIEVLGIEAVRRALLNEIRNVISFDGAYVNYRHLACLADVMTFRGHLMAVTRHGINRVDSGPLVRCSFEETVEILMDAAMFSQGDELAGVTENIMLGQ--LAQLGTGVMDLVLDANKLSQAIE 419          
BLAST of mRNA_Ecto-sp13_S_contig14092.3198.1 vs. uniprot
Match: A0A3R6YZ27_9STRA (DNA-directed RNA polymerase n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A3R6YZ27_9STRA)

HSP 1 Score: 425 bits (1092), Expect = 4.610e-134
Identity = 232/411 (56.45%), Postives = 299/411 (72.75%), Query Frame = 0
Query:    1 MCGVLAAQSIGEPITQMTLNTFHFAGVSAKNVTLGVPRVKEIINVAKNVRTPSLTIYLEERAAGADEAEGQEVAKRVVDILEYVTLGDITTSTQIYYDPDPRSTVVDEDVELLEGHFDIQEEEEDDKDTDRAR-PWLLRMELNREAVFDKRLDVVEIAKRVVAYFDGGLHVIRSDQNSEKLVLRIRVLDDVPDKIEAEPEAEDTAEADDVAMLKHLEKNLL-RLQLSGIAGISKVYMSEVTKPRFDEINGFAQRHKEWVLETDGTNLMAALCAEQIDPRRTVSNDVVECCTVLGIEGARGSLLKEFRAVVERDGSYVNYRHLSTLIDVMTFRGHLMAITRHGINRVDNGPMLRSSFEETVEILMEAAVFAEADNLKGVTDNIMLGQASFANLGTGTMDLLLDESKLSQAME 409
            M GV+AAQSIGEP TQMTLNTFH+AGVSAKNVTLGVPR+KEIIN+AK+V+TPS+ IYL+      D A   E AK++   LEY TL D+T+ST IYYDPDP STVV+ED + +  ++D+      D+DT  AR PWLLR+ELNR  + DK L++ EIA ++   +   L  I +D N++KLVLRIR++ +  DK+     A  +   +D   LK +E N+L +++L G+  + KV+M E  + ++DE  GF    KEWVL+TDGTNL+  +C E ID  RT+SND+VE   VLGIE  R +LL E R V+  DG+YVNYRHL+ L DVMTFRGHLMA+TRHGINRVD+GP++R SFEETVEILM+AA+F++ D L GVT+NIMLGQ   A+LGTG MDL+LD  KLSQA+E
Sbjct:  512 MAGVVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLKEIINIAKDVKTPSIQIYLK-----PDCAHDAEKAKQIQSTLEYTTLMDVTSSTAIYYDPDPTSTVVEEDADFVASYYDVI-----DEDTPLARSPWLLRIELNRIMMADKNLEMKEIALQIENEYGQDLSCIYTDDNADKLVLRIRIMSEEEDKVSQSGSA--SVGQEDDTFLKRVEHNMLTQMRLRGVPNVKKVFMRENPQNQWDEDKGFIMV-KEWVLDTDGTNLLDIICHESIDASRTISNDIVEIIEVLGIEAVRRALLNEIRNVISFDGAYVNYRHLACLADVMTFRGHLMAVTRHGINRVDSGPLVRCSFEETVEILMDAAMFSQGDELAGVTENIMLGQ--LAHLGTGVMDLVLDAKKLSQAIE 907          
BLAST of mRNA_Ecto-sp13_S_contig14092.3198.1 vs. uniprot
Match: A0A7S2W9H4_9STRA (DNA-directed RNA polymerase (Fragment) n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2W9H4_9STRA)

HSP 1 Score: 405 bits (1042), Expect = 4.230e-133
Identity = 225/416 (54.09%), Postives = 296/416 (71.15%), Query Frame = 0
Query:    1 MCGVLAAQSIGEPITQMTLNTFHFAGVSAKNVTLGVPRVKEIINVAKNVRTPSLTIYLEERAAGADEAEGQEVAKRVVDILEYVTLGDITTSTQIYYDPDPRSTVVDEDVELLEGHFDIQEEEEDDKDTDRARPWLLRMELNREAVFDKRLDVVEIAKRVVAYFDGGLHVIRSDQNSEKLVLRIRVLDDVPDKIEAEPEA--------EDTAEA--DDVAMLKHLEKNLL-RLQLSGIAGISKVYMSEVTKPR-FDEINGFAQRHKEWVLETDGTNLMAALCAEQIDPRRTVSNDVVECCTVLGIEGARGSLLKEFRAVVERDGSYVNYRHLSTLIDVMTFRGHLMAITRHGINRVDNGPMLRSSFEETVEILMEAAVFAEADNLKGVTDNIMLGQASFANLGTGTMDLLLDESKL 404
            M GVLAAQSIGEP TQMTLNTFH+AGVSAKNVTLGVPR+KEIINVAK V+TP LT+YL+E  +        +VA+ V  +LEY  LGDIT  T+IYYDPD  STV+ +D E ++ H++  +E +DD    R  PW+LR+ELN+    +K++ + EI +++   +   L VI++D N++ LV+RIR+++D+P  +  E +         ED  E   +D   LK LEKN+L +L+L GI  ++KV++    K   ++E  GF  +  EWVLETDGTNLM+ L  + ID  RT+SND+VE   VLGIEG RG++L E R V+  DGSYVNYRHL+ L+DVMT  GHLMAI RHGINRVD+GP+LR SFEETV++LM+A+VFAE + LKGVT+NIM+GQ   A +GTG MDLLLDE K+
Sbjct:  200 MAGVLAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLKEIINVAKTVKTPGLTVYLDESVSS-----DADVARLVCSMLEYTVLGDITKLTEIYYDPDITSTVIAKDREFVKLHYEFSDETQDD--LRRLSPWVLRVELNQTVFLEKKMQMSEIVQQITNEYGEDLDVIKTDDNADDLVVRIRIVNDMPTHMGGEVDDDGNNIIHDEDDVECGQEDDVFLKRLEKNMLGQLKLRGIPDVNKVFLRAGAKRTIWNEETGFGIKD-EWVLETDGTNLMSVLGVDYIDATRTISNDIVEVFVVLGIEGVRGAILSELRNVISFDGSYVNYRHLACLVDVMTMHGHLMAIDRHGINRVDSGPLLRCSFEETVDMLMDASVFAEEEVLKGVTENIMMGQ--LARVGTGDMDLLLDEQKV 605          
BLAST of mRNA_Ecto-sp13_S_contig14092.3198.1 vs. uniprot
Match: A0A7S1UU09_9STRA (DNA-directed RNA polymerase n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1UU09_9STRA)

HSP 1 Score: 418 bits (1074), Expect = 1.920e-132
Identity = 226/411 (54.99%), Postives = 301/411 (73.24%), Query Frame = 0
Query:    1 MCGVLAAQSIGEPITQMTLNTFHFAGVSAKNVTLGVPRVKEIINVAKNVRTPSLTIYLEERAAGADEAEGQEVAKRVVDILEYVTLGDITTSTQIYYDPDPRSTVVDEDVELLEGHFDIQEEEEDDKDTDRARPWLLRMELNREAVFDKRLDVVEIAKRVVAYFDGGLHVIRSDQNSEKLVLRIRVLDDVPDKI-----EAEP-EAEDTAEADDVAMLKHLEKNLLR-LQLSGIAGISKVYMSEVTKPRFDEINGFAQRHKEWVLETDGTNLMAALCAEQIDPRRTVSNDVVECCTVLGIEGARGSLLKEFRAVVERDGSYVNYRHLSTLIDVMTFRGHLMAITRHGINRVDNGPMLRSSFEETVEILMEAAVFAEADNLKGVTDNIMLGQASFANLGTGTMDLLLDESKL 404
            M GVLAAQSIGEP TQMTLNTFH+AGVSAKNVTLGVPR+KEIINVAK+ +TP LTIYLEE  +G      Q++AK V  +LEY  LGD+   T+IYYDPD + T+V++D E ++ ++D+ +  E+D    R  PW LR+ELN    FDK++ + EI + V   + G L+VI +D N+++LV+R+R+++DVP  +     +  P ++ED  + DDV  LK LEK++L  L+L GI  + KV+M    +  +D+ +GF  +  EW+LETDGTNLM+ L  + +D  RTV ND+VE   VLGIEG RG++L+E R V+  DGSYVNYRHL+ L+DVMT +GHLMAI RHGINRV++GP+LRSSFEETV++LM+AA +AE + LKGVT+NIMLGQ   A +GTG MDLLLDE K+
Sbjct:  461 MAGVLAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLKEIINVAKHPKTPGLTIYLEEDVSG-----DQDIAKLVHSLLEYTVLGDVVKLTEIYYDPDIKETIVEKDREFVKDYYDLSDATEED--LRRLSPWCLRIELNPSVFFDKKMKMNEIVREVNNEYGGDLNVIVTDDNADELVVRVRIVNDVPQGMGQVDDDGNPIQSEDVGQEDDV-FLKRLEKSMLSSLKLRGIDHVKKVFMRNAKRTTWDDESGFGVKD-EWILETDGTNLMSVLGVDYVDATRTVCNDIVEVFQVLGIEGVRGAILRELRNVISFDGSYVNYRHLACLVDVMTMQGHLMAIDRHGINRVESGPLLRSSFEETVDMLMDAATYAEEEILKGVTENIMLGQ--LARVGTGNMDLLLDEQKV 860          
BLAST of mRNA_Ecto-sp13_S_contig14092.3198.1 vs. uniprot
Match: A0A7J9EAE4_9ROSI (DNA-directed RNA polymerase (Fragment) n=2 Tax=Gossypium trilobum TaxID=34281 RepID=A0A7J9EAE4_9ROSI)

HSP 1 Score: 405 bits (1040), Expect = 9.770e-131
Identity = 219/421 (52.02%), Postives = 299/421 (71.02%), Query Frame = 0
Query:    1 MCGVLAAQSIGEPITQMTLNTFHFAGVSAKNVTLGVPRVKEIINVAKNVRTPSLTIYLEERAAGADEAEGQEVAKRVVDILEYVTLGDITTSTQIYYDPDPRSTVVDEDVELLEGHFDIQEEEEDDKDTDRARPWLLRMELNREAVFDKRLDVVEIAKRVVAYFDGGLHVIRSDQNSEKLVLRIRVLDDVPDKIEAEPEAEDTAEADDVAMLKHLEKNLL-RLQLSGIAGISKVYMSEVTKPRFDEINGFAQRHKEWVLETDGTNLMAALCAEQIDPRRTVSNDVVECCTVLGIEGARGSLLKEFRAVVERDGSYVNYRHLSTLIDVMTFRGHLMAITRHGINRVDNGPMLRSSFEETVEILMEAAVFAEADNLKGVTDNIMLGQASFANLGTGTMDLLLDESKLSQAMELTQLDTTMARL 420
            M G +AAQSIGEP TQMTLNTFH+AGVSAKNVTLGVPR++EIINVAK ++TPSL++YL   A+     + +E AK V   LEY TL  +T +T+++YDPDP ST+++ED++ ++ ++++ +EE      ++  PWLLR+ELNRE + DK+L + +IA+++   FD  L  I +D N+EKL+LRIR+++D   K E   E+     A+D   LK +E N+L  + L GI  I+KV++      +FDE +G+ +  +EWVL+T+G NL+A +C E +D RRT SN ++E   VLGIE  R SLL E R V+  DGSYVNYRHL+ L D MT+RGHLMAITRHGINR D GPM+R SFEETV+IL++AAV+AE+D L+GVT+NIMLGQ   A +GTG   L L++  L  A+EL QL + M  L
Sbjct:  178 MIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVYLSPEAS-----KTKEKAKNVQCALEYTTLRSVTHATEVWYDPDPMSTIIEEDIDFVKSYYEMPDEE---VAPEKISPWLLRIELNREMMVDKKLSMADIAEKINLEFDDDLTCIFNDDNAEKLILRIRIMNDEAPKGELNDES-----AEDDVFLKKIESNMLTEMALRGIPDINKVFIKHSKASKFDEADGY-KTGEEWVLDTEGVNLLAVMCHEDVDARRTTSNHLIEVIEVLGIEAVRRSLLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVYAESDYLRGVTENIMLGQ--LAPIGTGDCALYLNDEMLKNAIEL-QLPSYMEGL 581          
BLAST of mRNA_Ecto-sp13_S_contig14092.3198.1 vs. uniprot
Match: A0A024UAL5_9STRA (DNA-directed RNA polymerase subunit n=15 Tax=Aphanomyces TaxID=100860 RepID=A0A024UAL5_9STRA)

HSP 1 Score: 424 bits (1091), Expect = 1.300e-130
Identity = 232/411 (56.45%), Postives = 299/411 (72.75%), Query Frame = 0
Query:    1 MCGVLAAQSIGEPITQMTLNTFHFAGVSAKNVTLGVPRVKEIINVAKNVRTPSLTIYLEERAAGADEAEGQEVAKRVVDILEYVTLGDITTSTQIYYDPDPRSTVVDEDVELLEGHFDIQEEEEDDKDTDRAR-PWLLRMELNREAVFDKRLDVVEIAKRVVAYFDGGLHVIRSDQNSEKLVLRIRVLDDVPDKIEAEPEAEDTAEADDVAMLKHLEKNLL-RLQLSGIAGISKVYMSEVTKPRFDEINGFAQRHKEWVLETDGTNLMAALCAEQIDPRRTVSNDVVECCTVLGIEGARGSLLKEFRAVVERDGSYVNYRHLSTLIDVMTFRGHLMAITRHGINRVDNGPMLRSSFEETVEILMEAAVFAEADNLKGVTDNIMLGQASFANLGTGTMDLLLDESKLSQAME 409
            M GV+AAQSIGEP TQMTLNTFH+AGVSAKNVTLGVPR+KEIIN+AK+V+TPS+ IYL+      D A   E AK++   LEY TL D+T+ST IYYDPDP STVV+ED + +  ++D+      D+DT  AR PWLLR+ELNR  + DK L++ EIA ++   +   L  I +D N++KLVLRIR++ +  DK+     A  +   +D   LK +E N+L +++L G+  + KV+M E  + ++DE  GF    KEWVL+TDGTNL+  +C E ID  RT+SND+VE   VLGIE  R +LL E R V+  DG+YVNYRHL+ L DVMTFRGHLMA+TRHGINRVD+GP++R SFEETVEILM+AA+F++ D L GVT+NIMLGQ   A+LGTG MDL+LD  KLSQA+E
Sbjct: 1134 MAGVVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLKEIINIAKDVKTPSIQIYLK-----PDCAHDAEKAKQIQSTLEYTTLMDVTSSTAIYYDPDPTSTVVEEDADFVASYYDVI-----DEDTPLARSPWLLRIELNRIMMADKNLEMKEIALQIENEYGQDLSCIYTDDNADKLVLRIRIMSEEEDKVSQSGSA--SVGQEDDTFLKRVEHNMLTQMRLRGVPNVKKVFMRENPQNQWDEGKGFIMV-KEWVLDTDGTNLLDIICHESIDASRTISNDIVEIIEVLGIEAVRRALLNEIRNVISFDGAYVNYRHLACLADVMTFRGHLMAVTRHGINRVDSGPLVRCSFEETVEILMDAAMFSQGDELAGVTENIMLGQ--LAHLGTGVMDLVLDAKKLSQAIE 1529          
BLAST of mRNA_Ecto-sp13_S_contig14092.3198.1 vs. uniprot
Match: A0A3R6ZSG6_9STRA (DNA-directed RNA polymerase (Fragment) n=2 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A3R6ZSG6_9STRA)

HSP 1 Score: 418 bits (1074), Expect = 1.360e-130
Identity = 232/417 (55.64%), Postives = 298/417 (71.46%), Query Frame = 0
Query:    1 MCGVLAAQSIGEPITQMTLNTFHFAGVSAKNVTLGVPRVKEIINVAKNVRTPSLTIYLEERAAGADEAEGQEVAKRVVDILEYVTLGDITTSTQIYYDPDPRSTVVDEDVELLEGHFDIQEEEEDDKDTDRAR-PWLLRMELNREAVFDKRLDVVEIAKRVVAYFDGGLHVIRSDQNSEKLVLRIRVLDDVPDKIEAEPEAEDTAEADDVAMLKHLEKNLL-RLQLSGIAGISKVYMSEVTKPRFDEINGFAQRHKEWVLETDGTNLMAALCAEQIDPRRTVSNDVVECCTVLGIEGA------RGSLLKEFRAVVERDGSYVNYRHLSTLIDVMTFRGHLMAITRHGINRVDNGPMLRSSFEETVEILMEAAVFAEADNLKGVTDNIMLGQASFANLGTGTMDLLLDESKLSQAME 409
            M GV+AAQSIGEP TQMTLNTFH+AGVSAKNVTLGVPR+KEIIN+AK+V+TPS+ IYL+      D A   E AK++   LEY TL D+T ST IYYDPDP STVV+ED + +  ++D+      D+DT  AR PWLLR+ELNR  + DK L++ EIA ++   +   L  I +D N++KLVLRIR++ +  DK+     A  +   +D   LK +E N+L +++L G+  + KV+M E  + ++DE  GF    KEWVL+TDGTNL+  +C E ID  RT+SND+VE   VLGIE        R +LL E R V+  DG+YVNYRHL+ L DVMTFRGHLMA+TRHGINRVD+GP++R SFEETVEILM+AA+F++ D L GVT+NIMLGQ   A LGTG MDL+LD +KLSQA+E
Sbjct:  471 MAGVVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLKEIINIAKDVKTPSIQIYLK-----PDCAHDAEKAKQIQSTLEYTTLMDVTASTAIYYDPDPTSTVVEEDADFVASYYDVI-----DEDTPLARSPWLLRIELNRIMMADKNLEMKEIALQIENEYGQDLSCIYTDDNADKLVLRIRIMSEEEDKVSQNGSA--SVGQEDDTFLKRVEHNMLTQMRLRGVPNVKKVFMRENPQNQWDEEKGFIMV-KEWVLDTDGTNLLDIICHESIDASRTISNDIVEIIEVLGIEAVLPDCFVRRALLNEIRNVISFDGAYVNYRHLACLADVMTFRGHLMAVTRHGINRVDSGPLVRCSFEETVEILMDAAMFSQGDELAGVTENIMLGQ--LAQLGTGVMDLVLDANKLSQAIE 872          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig14092.3198.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LRY3_ECTSI5.700e-27699.07DNA-directed RNA polymerase subunit n=2 Tax=Ectoca... [more]
A0A6H5L9Y2_9PHAE8.250e-25499.74DNA-directed RNA polymerase subunit n=1 Tax=Ectoca... [more]
A0A836CHC4_9STRA5.850e-17167.21DNA-directed RNA polymerase subunit n=1 Tax=Tribon... [more]
A0A6A5AD01_9STRA2.020e-14056.45DNA-directed RNA polymerase n=2 Tax=Aphanomyces as... [more]
A0A3R6YZ27_9STRA4.610e-13456.45DNA-directed RNA polymerase n=1 Tax=Aphanomyces in... [more]
A0A7S2W9H4_9STRA4.230e-13354.09DNA-directed RNA polymerase (Fragment) n=1 Tax=Euc... [more]
A0A7S1UU09_9STRA1.920e-13254.99DNA-directed RNA polymerase n=1 Tax=Grammatophora ... [more]
A0A7J9EAE4_9ROSI9.770e-13152.02DNA-directed RNA polymerase (Fragment) n=2 Tax=Gos... [more]
A0A024UAL5_9STRA1.300e-13056.45DNA-directed RNA polymerase subunit n=15 Tax=Aphan... [more]
A0A3R6ZSG6_9STRA1.360e-13055.64DNA-directed RNA polymerase (Fragment) n=2 Tax=Aph... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR007081RNA polymerase Rpb1, domain 5PFAMPF04998RNA_pol_Rpb1_5coord: 1..346
e-value: 6.4E-58
score: 196.6
NoneNo IPR availableGENE3D1.10.150.390coord: 349..395
e-value: 4.8E-13
score: 50.7
NoneNo IPR availablePANTHERPTHR19376:SF52DNA-DIRECTED RNA POLYMERASE II SUBUNIT 1coord: 1..443
NoneNo IPR availablePANTHERPTHR19376DNA-DIRECTED RNA POLYMERASEcoord: 1..443
NoneNo IPR availableSUPERFAMILY64484beta and beta-prime subunits of DNA dependent RNA-polymerasecoord: 1..402
IPR007073RNA polymerase Rpb1, domain 7PFAMPF04990RNA_pol_Rpb1_7coord: 85..221
e-value: 1.3E-37
score: 128.8
IPR038593RNA polymerase Rpb1, domain 7 superfamilyGENE3D3.30.1360.140coord: 84..226
e-value: 2.5E-37
score: 129.8

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig14092contigEcto-sp13_S_contig14092:67..4059 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig14092.3198.1mRNA_Ecto-sp13_S_contig14092.3198.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig14092 49..4059 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig14092.3198.1 ID=prot_Ecto-sp13_S_contig14092.3198.1|Name=mRNA_Ecto-sp13_S_contig14092.3198.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=453bp
MCGVLAAQSIGEPITQMTLNTFHFAGVSAKNVTLGVPRVKEIINVAKNVR
TPSLTIYLEERAAGADEAEGQEVAKRVVDILEYVTLGDITTSTQIYYDPD
PRSTVVDEDVELLEGHFDIQEEEEDDKDTDRARPWLLRMELNREAVFDKR
LDVVEIAKRVVAYFDGGLHVIRSDQNSEKLVLRIRVLDDVPDKIEAEPEA
EDTAEADDVAMLKHLEKNLLRLQLSGIAGISKVYMSEVTKPRFDEINGFA
QRHKEWVLETDGTNLMAALCAEQIDPRRTVSNDVVECCTVLGIEGARGSL
LKEFRAVVERDGSYVNYRHLSTLIDVMTFRGHLMAITRHGINRVDNGPML
RSSFEETVEILMEAAVFAEADNLKGVTDNIMLGQASFANLGTGTMDLLLD
ESKLSQAMELTQLDTTMARLSGAAGSGAAGGAGGYMGTPSMTPAGTPHFT
PG*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR007081RNA_pol_Rpb1_5
IPR007073RNA_pol_Rpb1_7
IPR038593RNA_pol_Rpb1_7_sf