mRNA_Ecto-sp13_S_contig14083.3193.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig14083.3193.1
Unique NamemRNA_Ecto-sp13_S_contig14083.3193.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig14083.3193.1 vs. uniprot
Match: D7FLK6_ECTSI (Galactinol--sucrose galactosyltransferase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLK6_ECTSI)

HSP 1 Score: 160 bits (405), Expect = 1.210e-44
Identity = 80/100 (80.00%), Postives = 81/100 (81.00%), Query Frame = 1 
Query:    1 EFGIDYFLVWHAIAGYWAGVDLDSPDLVKYKPRRALLNRPPG------------EDSYTTKIRFGVVPPEKIRSFYDDYHRYLRSQGVHGVKVDAQSVVS 264
            EFGIDYFLVWHAIAGYWAGVDLDSPDLVKYKPRRALLNRPPG              S     RFGVVPPEKIRSFYDDYHRYLRSQGVHGVKVDAQSVV+
Sbjct:   97 EFGIDYFLVWHAIAGYWAGVDLDSPDLVKYKPRRALLNRPPGIVEVDPDMKMFFRVSKFLNKRFGVVPPEKIRSFYDDYHRYLRSQGVHGVKVDAQSVVN 196
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BLAST of mRNA_Ecto-sp13_S_contig14083.3193.1 vs. uniprot
Match: A0A6H5JFU4_9PHAE (Galactinol--sucrose galactosyltransferase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFU4_9PHAE)

HSP 1 Score: 159 bits (402), Expect = 2.040e-43
Identity = 79/100 (79.00%), Postives = 81/100 (81.00%), Query Frame = 1 
Query:    1 EFGIDYFLVWHAIAGYWAGVDLDSPDLVKYKPRRALLNRPPG------------EDSYTTKIRFGVVPPEKIRSFYDDYHRYLRSQGVHGVKVDAQSVVS 264
            EFGIDYFLVWHAIAGYWAGVDLDSPDLVKYKPRRALLNRPPG              S     RFGVVPPEKIRSFYDDYHRYL+SQGVHGVKVDAQSVV+
Sbjct:  442 EFGIDYFLVWHAIAGYWAGVDLDSPDLVKYKPRRALLNRPPGIVEVDPDMKMFFRVSKFLNKRFGVVPPEKIRSFYDDYHRYLKSQGVHGVKVDAQSVVN 541
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BLAST of mRNA_Ecto-sp13_S_contig14083.3193.1 vs. uniprot
Match: A0A835YGP5_9STRA (Galactinol--sucrose galactosyltransferase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YGP5_9STRA)

HSP 1 Score: 116 bits (290), Expect = 2.710e-28
Identity = 58/100 (58.00%), Postives = 69/100 (69.00%), Query Frame = 1 
Query:    1 EFGIDYFLVWHAIAGYWAGVDLDSPDLVKYKPRRALLNRP-------PGEDSYTTKI-----RFGVVPPEKIRSFYDDYHRYLRSQGVHGVKVDAQSVVS 264
            E  I YFLVWHAIAGYWAGVD+D+PDL K++P+RA L  P       P    +         RFGVVPPE IR+FYD+YHRYLR  GV GVKVDAQS+++
Sbjct:  530 EHDIKYFLVWHAIAGYWAGVDMDAPDLFKFRPQRARLTAPLDIVAVDPDMKMFFRVCKFLNKRFGVVPPEHIRAFYDEYHRYLRENGVDGVKVDAQSLLN 629
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BLAST of mRNA_Ecto-sp13_S_contig14083.3193.1 vs. uniprot
Match: A0A836CJ91_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CJ91_9STRA)

HSP 1 Score: 98.2 bits (243), Expect = 5.020e-22
Identity = 49/100 (49.00%), Postives = 65/100 (65.00%), Query Frame = 1 
Query:    1 EFGIDYFLVWHAIAGYWAGVDLDSPDLVKYKPRRALLNRPPG--EDSYTTKIR----------FGVVPPEKIRSFYDDYHRYLRSQGVHGVKVDAQSVVS 264
            ++G++ FLVWHA+ GYW GVD+D P+L  YK +   L  P G  E   +T +R          FG+VPPE I +FY +YH YLR+ GV GVKVDAQS++S
Sbjct:   24 KYGVENFLVWHAVQGYWQGVDVDRPELASYKAQWRRLVVPEGISERVGSTVLRRSAYMQRRYGFGLVPPETISAFYQEYHGYLRAHGVDGVKVDAQSILS 123
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BLAST of mRNA_Ecto-sp13_S_contig14083.3193.1 vs. uniprot
Match: A0A1F5YYJ4_9BACT (Uncharacterized protein (Fragment) n=1 Tax=Candidatus Glassbacteria bacterium RIFCSPLOWO2_12_FULL_58_11 TaxID=1817867 RepID=A0A1F5YYJ4_9BACT)

HSP 1 Score: 89.4 bits (220), Expect = 7.630e-19
Identity = 46/92 (50.00%), Postives = 58/92 (63.04%), Query Frame = 1 
Query:    1 EFGIDYFLVWHAIAGYWAGVDLDSPDLVKYKPRRA--LLNRP--PGEDSYTTKIRFGVVPPEKIRSFYDDYHRYLRSQGVHGVKVDAQSVVS 264
            E+G+ YFL+WHA  GYW G+D  SP++ KY   R+    NRP  P    + T  RF +V PE I SFY DYH +L + GV GVKVD QS +S
Sbjct:  291 EYGVPYFLIWHAFQGYWCGIDTLSPEMQKYPAYRSNGRSNRPIPPRYKEWLTS-RFNIVRPEAIESFYFDYHAFLATSGVDGVKVDNQSDLS 381
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BLAST of mRNA_Ecto-sp13_S_contig14083.3193.1 vs. uniprot
Match: A0A5B7BGS4_DAVIN (Galactinol--sucrose galactosyltransferase (Fragment) n=1 Tax=Davidia involucrata TaxID=16924 RepID=A0A5B7BGS4_DAVIN)

HSP 1 Score: 88.6 bits (218), Expect = 1.260e-18
Identity = 42/94 (44.68%), Postives = 56/94 (59.57%), Query Frame = 1 
Query:    4 FGIDYFLVWHAIAGYWAGVDLDSPDLVKYKPRRALLNRPPGEDSYTTKIRF--------GVVPPEKIRSFYDDYHRYLRSQGVHGVKVDAQSVV 261
            FG++Y  VWHA+ GYW G+D D+P   KY P+     + PG  ++   I          G++ P KI  FYDD HRYL SQGV GVKVD Q+++
Sbjct:  341 FGLEYVYVWHALMGYWGGLDPDAPGTNKYNPKLKFPLQSPGNLAHMRDIAMDSMEKYGVGMIDPAKIFEFYDDLHRYLVSQGVDGVKVDVQNIL 434
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BLAST of mRNA_Ecto-sp13_S_contig14083.3193.1 vs. uniprot
Match: A0A5J4ZNL9_9ASTE (Galactinol--sucrose galactosyltransferase n=1 Tax=Nyssa sinensis TaxID=561372 RepID=A0A5J4ZNL9_9ASTE)

HSP 1 Score: 88.6 bits (218), Expect = 1.410e-18
Identity = 42/94 (44.68%), Postives = 55/94 (58.51%), Query Frame = 1 
Query:    4 FGIDYFLVWHAIAGYWAGVDLDSPDLVKYKPRRALLNRPPGEDSYTTKIRF--------GVVPPEKIRSFYDDYHRYLRSQGVHGVKVDAQSVV 261
            FG+ Y  VWHA+ GYW G+D D+P+  KY P+     + PG  ++   I          G + P KI  FYDD HRYL SQGV GVKVD Q+++
Sbjct:  343 FGLKYVYVWHALMGYWGGLDPDAPETKKYNPKLKFPIQSPGNLAHKRDIAMDSMEKYGVGTIDPAKIFEFYDDLHRYLVSQGVDGVKVDVQNIL 436
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BLAST of mRNA_Ecto-sp13_S_contig14083.3193.1 vs. uniprot
Match: UPI0010A315BD (probable galactinol--sucrose galactosyltransferase 2 n=1 Tax=Prosopis alba TaxID=207710 RepID=UPI0010A315BD)

HSP 1 Score: 85.5 bits (210), Expect = 1.720e-17
Identity = 42/95 (44.21%), Postives = 54/95 (56.84%), Query Frame = 1 
Query:    1 EFGIDYFLVWHAIAGYWAGVDLDSPDLVKYKPRRALLNRPPGEDSYTTKIRF--------GVVPPEKIRSFYDDYHRYLRSQGVHGVKVDAQSVV 261
             FG+ Y  VWHA+AGYW GV   S  + KY P+ A   + PG       I          G++ PEKI +FY+DYH YL S GV GVKVD Q+++
Sbjct:  301 NFGLKYIYVWHALAGYWGGVMPSSDAMKKYNPKLAYPIQSPGNTGNLRDIAMDSLEKYGVGIIEPEKIFNFYNDYHSYLASCGVDGVKVDVQNLI 395
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BLAST of mRNA_Ecto-sp13_S_contig14083.3193.1 vs. uniprot
Match: A0A6P4CNC3_ARADU (Galactinol--sucrose galactosyltransferase n=3 Tax=Arachis TaxID=3817 RepID=A0A6P4CNC3_ARADU)

HSP 1 Score: 83.6 bits (205), Expect = 8.180e-17
Identity = 40/95 (42.11%), Postives = 54/95 (56.84%), Query Frame = 1 
Query:    1 EFGIDYFLVWHAIAGYWAGVDLDSPDLVKYKPRRALLNRPPGEDSYTTKIRF--------GVVPPEKIRSFYDDYHRYLRSQGVHGVKVDAQSVV 261
             FG+ Y  +WHA+AGYW GV   S  + KY P+ +   + PG       I          G++ PEK++ FY+DYH YL S GV GVKVD Q+V+
Sbjct:  313 NFGLKYVYMWHALAGYWGGVFPSSEAMKKYNPKLSYPIQSPGNTGNLRDIAMDSLQKYGVGIMDPEKLQDFYNDYHSYLASCGVDGVKVDVQNVI 407
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BLAST of mRNA_Ecto-sp13_S_contig14083.3193.1 vs. uniprot
Match: A0A7J7GUI0_CAMSI (Galactinol--sucrose galactosyltransferase n=3 Tax=Camellia sinensis TaxID=4442 RepID=A0A7J7GUI0_CAMSI)

HSP 1 Score: 83.6 bits (205), Expect = 8.210e-17
Identity = 40/95 (42.11%), Postives = 54/95 (56.84%), Query Frame = 1 
Query:    1 EFGIDYFLVWHAIAGYWAGVDLDSPDLVKYKPRRALLNRPPGEDSYTTKIRF--------GVVPPEKIRSFYDDYHRYLRSQGVHGVKVDAQSVV 261
             FG+ Y  VWHA+ GYW G+  D+P   KY P+     + PG  ++   I          G + P+KI  FYDD H+YL SQ V GVKVDAQ+++
Sbjct:  377 NFGLKYVYVWHALMGYWGGLHPDAPGTKKYNPKLKFPVQSPGNLAHLRDIAMDCMEKYGVGTIDPDKIFEFYDDLHKYLVSQEVDGVKVDAQNIL 471
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig14083.3193.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FLK6_ECTSI1.210e-4480.00Galactinol--sucrose galactosyltransferase n=1 Tax=... [more]
A0A6H5JFU4_9PHAE2.040e-4379.00Galactinol--sucrose galactosyltransferase n=1 Tax=... [more]
A0A835YGP5_9STRA2.710e-2858.00Galactinol--sucrose galactosyltransferase n=1 Tax=... [more]
A0A836CJ91_9STRA5.020e-2249.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A1F5YYJ4_9BACT7.630e-1950.00Uncharacterized protein (Fragment) n=1 Tax=Candida... [more]
A0A5B7BGS4_DAVIN1.260e-1844.68Galactinol--sucrose galactosyltransferase (Fragmen... [more]
A0A5J4ZNL9_9ASTE1.410e-1844.68Galactinol--sucrose galactosyltransferase n=1 Tax=... [more]
UPI0010A315BD1.720e-1744.21probable galactinol--sucrose galactosyltransferase... [more]
A0A6P4CNC3_ARADU8.180e-1742.11Galactinol--sucrose galactosyltransferase n=3 Tax=... [more]
A0A7J7GUI0_CAMSI8.210e-1742.11Galactinol--sucrose galactosyltransferase n=3 Tax=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig14083contigEcto-sp13_S_contig14083:470..1376 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start0
Seed ortholog score160.6
Seed ortholog evalue3.3e-37
Seed eggNOG ortholog2880.D7FLK6
Preferred nameAGA1
Model size267
KEGG rclassRC00049,RC00059
KEGG koko:K06617
KEGG ReactionR02411
KEGG Pathwayko00052,map00052
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003824,GO:0004553,GO:0004557,GO:0005575,GO:0005911,GO:0005975,GO:0006950,GO:0006979,GO:0008150,GO:0008152,GO:0009056,GO:0009311,GO:0009313,GO:0009506,GO:0009628,GO:0015925,GO:0016052,GO:0016787,GO:0016798,GO:0030054,GO:0033530,GO:0034484,GO:0044238,GO:0050896,GO:0052692,GO:0055044,GO:0071704,GO:0080167,GO:1901575
Exons2
EggNOG free text desc.galactinol-sucrose galactosyltransferase activity
EggNOG OGs2CC3R@1,2QPVE@2759
EC2.4.1.82
Cds size267
COG Functional cat.S
CAZyGH36
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462752.8239944-CDS-Ecto-sp13_S_contig14083:469..5861681462752.8239944-CDS-Ecto-sp13_S_contig14083:469..586Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14083 470..586 -
1681462752.8468966-CDS-Ecto-sp13_S_contig14083:1226..13761681462752.8468966-CDS-Ecto-sp13_S_contig14083:1226..1376Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14083 1227..1376 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig14083.3193.1prot_Ecto-sp13_S_contig14083.3193.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig14083 470..1376 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig14083.3193.1

>prot_Ecto-sp13_S_contig14083.3193.1 ID=prot_Ecto-sp13_S_contig14083.3193.1|Name=mRNA_Ecto-sp13_S_contig14083.3193.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=89bp
EFGIDYFLVWHAIAGYWAGVDLDSPDLVKYKPRRALLNRPPGEDSYTTKI
RFGVVPPEKIRSFYDDYHRYLRSQGVHGVKVDAQSVVS*
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mRNA from alignment at Ecto-sp13_S_contig14083:470..1376-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig14083.3193.1 ID=mRNA_Ecto-sp13_S_contig14083.3193.1|Name=mRNA_Ecto-sp13_S_contig14083.3193.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=907bp|location=Sequence derived from alignment at Ecto-sp13_S_contig14083:470..1376- (Ectocarpus species13 EcNAP12_S_4_19m)
GAGTTCGGCATCGACTACTTTTTGGTCTGGCACGCCATCGCCGGGTACTG
GGCAGGAGTAGACCTCGACTCCCCGGACTTGGTTAAGTACAAGCCGCGCC
GGGCTTTGCTCAACCGGCCACCTGGTGAGGATAGCTACACTACAAAGATA
GTAGGTGTTGCTGCGTGGCGGGGGGTCTGCACGCTCGATGTTGCTCAGGG
GCGGGAAGAGCGTCAGTGTTTTCAACTCTGAGCAGTGTGATGATCCCGGT
GGCAAATGTAAGTAAGTGATGTACCTATTAACGTTGGTGCCTTGTGTGTG
TTTCTTTTACCTGTGGACGAAAAAAGGTATGGTATATTTTCTGTGTGTTT
CTTGCATTCATATTTGCTGGAATGTATGATTCTTCTTCCCGTGGGCGACA
AAAGGTAAGTCTATTGCTTATGCTGCCAGTGTGTTTGTGTTTTCTCCTCC
CGTAACGAATAAAAGTGTATTTGATTGCTTCCATGATTGCCGGTGTGCGC
GTGTTTCTCTTACCGCTGACGAAAAAAGGCATACCCAGTATTTTATTGAT
TGTATTGCTGGTGTGTGTGTTTCCTCTTCCCGTTGAAAAAAAAAGGTGTA
GCCTTTTGCTTGTCCTGCTGGCATGTTTATGTTTCTTTTTCCAGTCAACG
AAAAATGGTATTTCTGTTTGATTGCTTACAATAATATTGCTGGTACGCGT
GTTTTCCTCTTCCCGTCGACGAAAAAAGGTATCGTGGAGGTGGACCCGGA
CATGAAGATGTTCTTCCGCGTGTCCAAGTTCCTCAACAAGCGTTTCGGGG
TCGTGCCCCCCGAGAAGATCCGGTCCTTCTACGACGACTACCACCGCTAC
CTCAGGTCCCAGGGAGTGCACGGGGTTAAGGTCGACGCGCAATCGGTGGT
GAGTTGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig14083:470..1376-

>mRNA_Ecto-sp13_S_contig14083.3193.1 ID=mRNA_Ecto-sp13_S_contig14083.3193.1|Name=mRNA_Ecto-sp13_S_contig14083.3193.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=267bp|location=Sequence derived from alignment at Ecto-sp13_S_contig14083:470..1376- (Ectocarpus species13 EcNAP12_S_4_19m)
GAGTTCGGCATCGACTACTTTTTGGTCTGGCACGCCATCGCCGGGTACTG
GGCAGGAGTAGACCTCGACTCCCCGGACTTGGTTAAGTACAAGCCGCGCC
GGGCTTTGCTCAACCGGCCACCTGGTGAGGATAGCTACACTACAAAGATA
CGTTTCGGGGTCGTGCCCCCCGAGAAGATCCGGTCCTTCTACGACGACTA
CCACCGCTACCTCAGGTCCCAGGGAGTGCACGGGGTTAAGGTCGACGCGC
AATCGGTGGTGAGTTGA
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