mRNA_Ecto-sp13_S_contig14074.3183.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig14074.3183.1
Unique NamemRNA_Ecto-sp13_S_contig14074.3183.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig14074.3183.1 vs. uniprot
Match: D8LH88_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LH88_ECTSI)

HSP 1 Score: 710 bits (1833), Expect = 1.680e-244
Identity = 574/675 (85.04%), Postives = 591/675 (87.56%), Query Frame = 1 
Query:    1 FSSPHISSLPHLSQAPSAKTSVTRRQAAATIPGGVPSGKLERGAPASKKSDQSPFPNQSPPPXXXXVNPTELTPXXXXXXXXXXXXXXXXXXXXXPKTAVAGKATAASRGTVGPSAVSTKVAVAAGTTEGSVAAVGGAARAKAXXXXXXAVEDKTAVSAKEREEVTATDKPTEDKKKGLKAGPETTAAEKVLTLVEMGLVNKEEASSYYEALSDLERTTQEAKAXXXXXXXXXXSAARSSSASPFSPQEGPLSLVPFPAVCAALGAAGTQSLHLAGALGTACSVFGAVAGVALGGLVVIGDDPLGRAARAAGLALARSAGAAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGSVAALPGAVVAKAADGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDAVSSPGKTLTALASGASSLVAQQVEGSKKKARPAASAASTEKAPQASTAATSMEEKQEPEGIPIDELEAKMSSVRKALERFDTVKSRIEEANTSDTMRKTVSMTRGMDMSAEREKNEEARAAAKRPNEAQVNGNKESTSARPGGELPSVASTTTPKSPKPKPMNQERRKQVTEKLLEKASXXXXXXXXGLXAAAASSRREAENTQAASPTATPIAGADKKTPQETVATH*G 2025
            F  PH+SSLPHLSQAPSAKTSVTRRQAAATIPGGVPSGKLERGAP SK SDQSPFPNQSPPPXXX VNPTE TP  XXXXXXX            PKTA AGKA AAS+GTVGPSAVS K AVAAGTT+GS            XXXXXX      AVSAKEREEVTATDKPTEDKKKGLKAGPETTAAEKVLTLVE+GLV+KEEAS+YYEALSDLERTTQEAKAXXXXXXXXXX      SASPFSPQEGPLSLVPFPAVCAALGAAGT SLHLAGALGTA SVFGAVAGVALGGLVVIGDDPLGRAARAAGLALARSAGAAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX SV ALPGAV  KAADG           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX  DAVSSPGKTLTALASGASSLVAQQ+E SKKKARPAA AAST+KAPQASTAA S+EEKQEPEGIPIDELEAKMSSVRKALERFDTVKSRIEEANTSDTMRKTVSMTRGMDMSAEREKNEEARAAA+RPNEA+VNGNK+STSARPGGE+PSVASTTT ++PKPK M+Q+RRKQV EKLLEKAS        GL AAAASSRREAENTQAASPTATPI GADKKTPQETVATH G
Sbjct:   23 FLRPHVSSLPHLSQAPSAKTSVTRRQAAATIPGGVPSGKLERGAPTSKTSDQSPFPNQSPPPXXXSVNPTEATPGSXXXXXXXATQVKGKGASGTPKTAAAGKAAAASKGTVGPSAVSPKAAVAAGTTQGSXXXXXXXXXXXXXXXXXXXXXXXXAVSAKEREEVTATDKPTEDKKKGLKAGPETTAAEKVLTLVEIGLVDKEEASTYYEALSDLERTTQEAKAXXXXXXXXXXXXXXXXSASPFSPQEGPLSLVPFPAVCAALGAAGTHSLHLAGALGTAFSVFGAVAGVALGGLVVIGDDPLGRAARAAGLALARSAGAAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSVTALPGAVATKAADGARGALQDTSEAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLNDAVSSPGKTLTALASGASSLVAQQIESSKKKARPAAPAASTKKAPQASTAAASVEEKQEPEGIPIDELEAKMSSVRKALERFDTVKSRIEEANTSDTMRKTVSMTRGMDMSAEREKNEEARAAAERPNEARVNGNKKSTSARPGGEMPSVASTTTTRAPKPKTMDQDRRKQVAEKLLEKASQRATEAKAGLKAAAASSRREAENTQAASPTATPIGGADKKTPQETVATHKG 697
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig14074.3183.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LH88_ECTSI1.680e-24485.04Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig14074contigEcto-sp13_S_contig14074:493..4522 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size2691
Hectar predicted targeting categoryother localisation
Exons5
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-24_000990.1
Cds size1434
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig14074.3183.1prot_Ecto-sp13_S_contig14074.3183.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig14074 1347..3853 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462752.144098-UTR-Ecto-sp13_S_contig14074:492..10621681462752.144098-UTR-Ecto-sp13_S_contig14074:492..1062Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig14074 493..1062 +
1681462752.1527524-UTR-Ecto-sp13_S_contig14074:1328..13461681462752.1527524-UTR-Ecto-sp13_S_contig14074:1328..1346Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig14074 1329..1346 +
1681462752.1995394-UTR-Ecto-sp13_S_contig14074:3853..45221681462752.1995394-UTR-Ecto-sp13_S_contig14074:3853..4522Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig14074 3854..4522 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462752.1606176-CDS-Ecto-sp13_S_contig14074:1346..21801681462752.1606176-CDS-Ecto-sp13_S_contig14074:1346..2180Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14074 1347..2180 +
1681462752.1702776-CDS-Ecto-sp13_S_contig14074:2438..26031681462752.1702776-CDS-Ecto-sp13_S_contig14074:2438..2603Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14074 2439..2603 +
1681462752.1831238-CDS-Ecto-sp13_S_contig14074:2995..31621681462752.1831238-CDS-Ecto-sp13_S_contig14074:2995..3162Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14074 2996..3162 +
1681462752.191276-CDS-Ecto-sp13_S_contig14074:3585..38531681462752.191276-CDS-Ecto-sp13_S_contig14074:3585..3853Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14074 3586..3853 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig14074.3183.1

>prot_Ecto-sp13_S_contig14074.3183.1 ID=prot_Ecto-sp13_S_contig14074.3183.1|Name=mRNA_Ecto-sp13_S_contig14074.3183.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=478bp
MGLVNKEEASSYYEALSDLERTTQEAKAAAAAAAESQPSAARSSSASPFS
PQEGPLSLVPFPAVCAALGAAGTQSLHLAGALGTACSVFGAVAGVALGGL
VVIGDDPLGRAARAAGLALARSAGAAGGAAGKSVSESAAGAAGAAVGAVE
EAVVKAPANFVAGVASSISSAVSSAVGSVAALPGAVVAKAADGAKGALQD
TSEAVVNLPGEVARKAAQAAGGALQSTSDAAVTAVRESPKMAAKRLNDAV
SSPGKTLTALASGASSLVAQQVEGSKKKARPAASAASTEKAPQASTAATS
MEEKQEPEGIPIDELEAKMSSVRKALERFDTVKSRIEEANTSDTMRKTVS
MTRGMDMSAEREKNEEARAAAKRPNEAQVNGNKESTSARPGGELPSVAST
TTPKSPKPKPMNQERRKQVTEKLLEKASQRAAEAKAGLKAAAASSRREAE
NTQAASPTATPIAGADKKTPQETVATH*
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mRNA from alignment at Ecto-sp13_S_contig14074:493..4522+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig14074.3183.1 ID=mRNA_Ecto-sp13_S_contig14074.3183.1|Name=mRNA_Ecto-sp13_S_contig14074.3183.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=4030bp|location=Sequence derived from alignment at Ecto-sp13_S_contig14074:493..4522+ (Ectocarpus species13 EcNAP12_S_4_19m)
TTCTCCAGCCCCCACATCTCCTCGCTTCCACATCTGAGCCAAGCCCCCTC
GGCGAAGACTTCTGTTACGAGACGGCAAGCGGCTGCCACCATACCAGGGG
GCGTACCGAGCGGAAAGCTGGAGAGAGGAGCTCCAGCGTCTAAGAAATCA
GACCAGTCACCTTTTCCGAACCAATCACCGCCGCCGCCTCCGCAAAGCGT
GAACCCGACCGAACTTACGCCAGGCGCTACTGCTGTGACAGGAGGCTCCG
GAACACAAGGAAAGGGGAAAGGTGCTAGTGGCACTCCGAAAACAGCGGTA
GCTGGAAAGGCAACCGCTGCATCTAGGGGGACCGTTGGGCCGTCTGCCGT
GTCAACAAAGGTGGCAGTAGCGGCGGGAACAACGGAAGGCTCGGTGGCGG
CGGTGGGAGGGGCTGCTAGGGCCAAAGCCGGGGGGGCGGCTGTTGCTGCG
GTGGAGGACAAAACAGCGGTCTCTGCCAAAGAACGGGAAGAGGTAACGGC
AACAGACAAGCCGACCGAGGATAAGAAGAAGGGTCTCAAGGCTGGACCGG
AAACAACCGCGGCGGAGAAGGTGTGGCGTGCCGCAGTCAGCGGTTTGTGT
GTCAGGTGTTTCGTTGCGTTGCTGACGGTGTTGCGCGCGTGTGGCGTTCG
AAAGTTGAAGCGGGCGTGAGCACCCCGTTCTATCCTGGCTTAGAGAGGAA
GAGCTGCCCCCTGGAAAGTTTTGAGAGTAAGAGACACCTCTTGCGTTGAT
GAAACAAAGAGACCAACAAGAATTCGCTCAGGACCTCGTGTATACGCCGG
CCCCGCCTATCTCCCCCATCCCACCCCCTGTAACAGGTGCTGACCCTGGT
AGAGATGGGTTTGGTGAATAAAGAGGAGGCATCGTCCTACTACGAAGCCC
TCTCCGACCTCGAGCGTACAACGCAGGAAGCGAAGGCAGCAGCCGCCGCG
GCCGCCGAAAGCCAACCGTCAGCAGCCCGGTCCTCGTCCGCGTCACCGTT
CTCGCCGCAAGAGGGGCCCTTGAGCCTCGTCCCCTTCCCGGCCGTCTGCG
CCGCACTCGGCGCCGCAGGCACGCAGTCGCTTCACCTGGCCGGGGCACTT
GGCACAGCGTGTTCTGTGTTTGGCGCGGTGGCAGGAGTTGCCCTCGGGGG
TCTAGTGGTGATCGGGGATGACCCGCTCGGTAGAGCAGCCCGCGCGGCGG
GACTGGCGTTGGCGCGGTCGGCCGGTGCTGCAGGGGGAGCGGCAGGAAAG
AGCGTCTCGGAGTCTGCCGCTGGGGCTGCCGGAGCGGCGGTGGGCGCCGT
AGAGGAGGCCGTCGTGAAAGCGCCGGCGAACTTTGTCGCCGGCGTGGCGA
GCTCGATCTCGAGCGCGGTTTCCTCGGCGGTGGGGTCGGTTGCAGCCTTG
CCCGGGGCGGTGGTGGCGAAGGCTGCGGACGGAGCTAAGGGGGCCCTCCA
AGACACATCGGAAGCGGTTGTGAACTTGCCCGGGGAGGTTGCGCGAAAGG
CGGCCCAGGCGGCAGGAGGTGCTTTGCAGAGCACGTCGGATGCGGCGGTG
ACCGCGGTGAGAGAATCGCCGAAGATGGCCGCGAAGCGCCTGAACGATGC
CGTCTCTTCCCCGGGCAAGACTCTCACTGCTCTTGCCAGCGGTGCATCGA
GCTTGGTGGCGCAACAAGTCGAGGGCAGCAAGAAGAAGGTGATTGGGTCA
GCTTGCTTGAAAACTGCTGTTTGGGTGACTGCTGTGTAGACAGCGGTCTG
TTGTTGAACACGCTGGTCGGCGGTATTCCTATGATGCGTTTTCACCGTTT
TTCCCTTCGTTACGGAAACAATGCTCTTTGCCTGTTTCGAGTCGTGAAGT
TGCAGCTTTGTTTTGAAGGGCGTTCTAAACGCGCGCACTAGTCCTCCATT
TTGGCTGACACGAATTTTGTGTATTGCTCTCTCCCGTCTCCATCAGGCAC
GCCCAGCCGCGTCCGCGGCGTCAACCGAGAAAGCCCCCCAAGCATCAACG
GCAGCCACAAGCATGGAGGAGAAACAGGAACCGGAAGGGATACCTATCGA
TGAGTTGGAGGCGAAGATGTCGTCTGTTAGAAAGGCCCTCGAGCGCTTCG
ATACCGTCAAGGTGTGGTTGGTGGCGTGCACTTCGATACCACCAGTAGAT
GAGGGGATACGACAGCGATATCCTGGGGTGGGGGGGCGTAAGATACCACC
CCTCCAATGCCTTTGTGACAATGCTTTTGTCTTAGATGTGGTGCGCTACG
TTGTGGTCTGAATTGTTTTTTGCATGAGATGAGTGCCTTCGTGCCATTCT
AGCGCTAACCCGGTGCGTTTGTGATTTCATTTTCGTAAAAAGTTTGCGAA
TGTTTTTTTTTTCGAGAGCGAAACACGTGATTGCATCGCTTCAACGTTCT
GCCCATCTTCTCGATTGTCCGTGTGAAGCTGGTGCTATCGCTGTTGCTAA
CCTCCGCGATGGGCATCGTCCCTGGACATTTTTGTTGTCTTTTCGTCTTT
CAGAGCCGCATTGAAGAAGCGAATACGTCGGACACGATGCGGAAGACGGT
GAGCATGACGCGAGGCATGGACATGTCAGCCGAGAGGGAGAAGAACGAGG
AGGCGCGAGCGGCCGCTAAGAGGCCAAACGAAGCCCAAGTGAACGGTAAC
AAGGAGAGCACGTCCGCCAGGTATGAATCATGTCCACCTACCCTTGCCAT
CTGCCCCCTTCTCCCGTGTTTTTCCGCCGTGACAACTGCCTTGTTGACTA
GGGGTCTCCATCGGGCTTTTTCGATCGCAGGTCCCCCGGCACCTGAAATA
ACATGGTATCTTGGACATGTCGCCATATCATCACCGCTGTCACATTAGAA
GACAGGGCGTTAGGTTTTCTTTGGGGTATTAGGGGTCCGGTTGTCGATCT
TCTACATAACTTTCAGAACTTGAATAGACTGTGATTTCCAGCGTTGAGCG
TAGCGGCGCAATCGGTGTCTTGGTACGGCTACGCAAGCACTTAATTGTAT
TCAAGTAATAAACAACTTTCGACGTTAGTTCGAGGAACACGACGACCTTT
CTAGCATGATTAACTTCCCGATTCCGCACGCCCCTGCTTGCAGACCGGGT
GGGGAGCTGCCCAGCGTAGCATCGACCACCACCCCAAAATCACCAAAACC
GAAACCGATGAACCAAGAGAGACGCAAGCAAGTCACGGAGAAGCTGCTGG
AGAAGGCATCCCAGAGAGCCGCGGAGGCGAAGGCCGGCCTTAAGGCGGCG
GCAGCGTCGTCGCGACGAGAAGCCGAGAACACCCAAGCGGCGTCCCCCAC
AGCCACCCCCATCGCTGGCGCCGACAAGAAAACTCCGCAAGAGACCGTCG
CAACGCATTAAGGCTGGCTCTCCACGAGCATCGTGTTTTAGGGATCAGCC
CCATGGTCCATACCTGTACGTATGATACGGCCTCTAAAGTTTTGCTTCTT
GTTTCTAATTTTGTTTTTGCAGGGCCCCGTTCTTATGTTGCTTTTTTTTT
TTTCCATGGTTATGGACACCAAGACACGCGCATTCTCGAGGTCTATGGGG
TGGGAGTTCTTGTTCTGGTGGGTCACACGGAACAGGTTCTGTTTCTTTTG
AGGCGTTGTTCTGTTGGGGCGGGTTCTGGTGTGCTGGTGGCGATGGCACA
GCAGTGGGCAGGCAGGCCCTTGGGCTGTGTTGGCCGGGTGAAAAAGTTAA
CAGCAGCAATTCATCGATTATGTTTCTTAGTCGACGTGAAGGATTTGGCG
ATGCGGGGCGCACCAATGCCGTATTGGCCACCAACGTCTTTTTGGCTGGC
ATTGGCATTGCTGCTGGGGATGATCCGAGGTCGGAGGTTTGGCGTTCATC
GACAGCCTGTTTCCCGATAAGCGCTTCGAAGCTCTCCTAGATATATTTCG
GTCGGTGTAATGTGAGCGCTCAGAGCCTTGAAAGATAGAAGCCTGTTGGA
TTTGGGGCCCAAAGTATAAATATGGTATGCAGTTGTCACACGCGGGATAG
TGATGTGGCTTAGCAGTAGATTCAGTCAAC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig14074:493..4522+

>mRNA_Ecto-sp13_S_contig14074.3183.1 ID=mRNA_Ecto-sp13_S_contig14074.3183.1|Name=mRNA_Ecto-sp13_S_contig14074.3183.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1434bp|location=Sequence derived from alignment at Ecto-sp13_S_contig14074:493..4522+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGGTTTGGTGAATAAAGAGGAGGCATCGTCCTACTACGAAGCCCTCTC
CGACCTCGAGCGTACAACGCAGGAAGCGAAGGCAGCAGCCGCCGCGGCCG
CCGAAAGCCAACCGTCAGCAGCCCGGTCCTCGTCCGCGTCACCGTTCTCG
CCGCAAGAGGGGCCCTTGAGCCTCGTCCCCTTCCCGGCCGTCTGCGCCGC
ACTCGGCGCCGCAGGCACGCAGTCGCTTCACCTGGCCGGGGCACTTGGCA
CAGCGTGTTCTGTGTTTGGCGCGGTGGCAGGAGTTGCCCTCGGGGGTCTA
GTGGTGATCGGGGATGACCCGCTCGGTAGAGCAGCCCGCGCGGCGGGACT
GGCGTTGGCGCGGTCGGCCGGTGCTGCAGGGGGAGCGGCAGGAAAGAGCG
TCTCGGAGTCTGCCGCTGGGGCTGCCGGAGCGGCGGTGGGCGCCGTAGAG
GAGGCCGTCGTGAAAGCGCCGGCGAACTTTGTCGCCGGCGTGGCGAGCTC
GATCTCGAGCGCGGTTTCCTCGGCGGTGGGGTCGGTTGCAGCCTTGCCCG
GGGCGGTGGTGGCGAAGGCTGCGGACGGAGCTAAGGGGGCCCTCCAAGAC
ACATCGGAAGCGGTTGTGAACTTGCCCGGGGAGGTTGCGCGAAAGGCGGC
CCAGGCGGCAGGAGGTGCTTTGCAGAGCACGTCGGATGCGGCGGTGACCG
CGGTGAGAGAATCGCCGAAGATGGCCGCGAAGCGCCTGAACGATGCCGTC
TCTTCCCCGGGCAAGACTCTCACTGCTCTTGCCAGCGGTGCATCGAGCTT
GGTGGCGCAACAAGTCGAGGGCAGCAAGAAGAAGGCACGCCCAGCCGCGT
CCGCGGCGTCAACCGAGAAAGCCCCCCAAGCATCAACGGCAGCCACAAGC
ATGGAGGAGAAACAGGAACCGGAAGGGATACCTATCGATGAGTTGGAGGC
GAAGATGTCGTCTGTTAGAAAGGCCCTCGAGCGCTTCGATACCGTCAAGA
GCCGCATTGAAGAAGCGAATACGTCGGACACGATGCGGAAGACGGTGAGC
ATGACGCGAGGCATGGACATGTCAGCCGAGAGGGAGAAGAACGAGGAGGC
GCGAGCGGCCGCTAAGAGGCCAAACGAAGCCCAAGTGAACGGTAACAAGG
AGAGCACGTCCGCCAGACCGGGTGGGGAGCTGCCCAGCGTAGCATCGACC
ACCACCCCAAAATCACCAAAACCGAAACCGATGAACCAAGAGAGACGCAA
GCAAGTCACGGAGAAGCTGCTGGAGAAGGCATCCCAGAGAGCCGCGGAGG
CGAAGGCCGGCCTTAAGGCGGCGGCAGCGTCGTCGCGACGAGAAGCCGAG
AACACCCAAGCGGCGTCCCCCACAGCCACCCCCATCGCTGGCGCCGACAA
GAAAACTCCGCAAGAGACCGTCGCAACGCATTAA
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