mRNA_Ecto-sp13_S_contig14068.3173.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig14068.3173.1
Unique NamemRNA_Ecto-sp13_S_contig14068.3173.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig14068.3173.1 vs. uniprot
Match: D7FTV7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTV7_ECTSI)

HSP 1 Score: 411 bits (1056), Expect = 8.210e-133
Identity = 367/452 (81.19%), Postives = 376/452 (83.19%), Query Frame = 1 
Query:   49 LAAVMSAGKGRPLYSRTGTGGCLDTERSTSFSPPTAAEAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTPSVRFRAATTTVAGGIKQAFALATELVTVRHXXXXXXXXXXXXXXXXXXXXXXXXXXDSDAGASGSKDVSAEARRLETREEDNVHGGVAVEKLPAETEGQGGDEEASGEAAEPPLLPGKELVKRMKNISQYIVARSKTAEEAYSDTWEVVMEMADRAASRGCDVPTEDYTSSSAPCYGALL-----------------ETLNRGLKHLPMEHDISVEAFHPEAVSDASPLDHRFTRSPFPTLHVCYHGLREKGTALNPRVAAAPEGRRKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRGDGRRS-TDQSGDGASTGGETERK 1350
            LAAVMSAGKGRPLYSRTGTGG LDTERSTSFSPPTAAEAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX                   XXXXXXXXXXXXXXXXX     TPSVRFRAATTTVAGGIKQAFA A ELVTV  XXXXXXXXXXXXXXX           DSDAGASGS+D+S EA+ LETREEDNV+GGVAVE+L AETEGQGGDEEASG+AAEPPLLPGKELVKRMKNISQY+VARSKTAEEAYSDTWEVVMEMADRAASRGCDVPTEDYTSSSAPCYGALL                 ETLNRGLKHLPMEHDISVEAFHPEAVSDASPLDHRFTRSPFPTLHVCYHGLRE+GTALNPRVAA       XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX        TDQSGDGASTGGE ER+
Sbjct:  365 LAAVMSAGKGRPLYSRTGTGGGLDTERSTSFSPPTAAEAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSRTASATAVPDAHLSSESGXXXXXXXXXXXXXXXXXPRHH-TPSVRFRAATTTVAGGIKQAFAHAAELVTVHXXXXXXXXXXXXXXXXDGG--------DSDAGASGSQDISVEAQLLETREEDNVNGGVAVEELAAETEGQGGDEEASGKAAEPPLLPGKELVKRMKNISQYVVARSKTAEEAYSDTWEVVMEMADRAASRGCDVPTEDYTSSSAPCYGALLVTPDLATYSSDTFLRFQETLNRGLKHLPMEHDISVEAFHPEAVSDASPLDHRFTRSPFPTLHVCYHGLREEGTALNPRVAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTDQSGDGASTGGEAERQ 807
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BLAST of mRNA_Ecto-sp13_S_contig14068.3173.1 vs. uniprot
Match: A0A6H5KW26_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KW26_9PHAE)

HSP 1 Score: 385 bits (990), Expect = 1.910e-128
Identity = 276/338 (81.66%), Postives = 283/338 (83.73%), Query Frame = 1 
Query:  421 TPSVRFRAATTTVAGGIKQAFALATELVTVRHXXXXXXXXXXXXXXXXXXXXXXXXXXDSDAGASGSKDVSAEARRLETREEDNVHGGVAVEKLP---AETEGQGGDEEASGEAAEPPLLPGKELVKRMKNISQYIVARSKTAEEAYSDTWEVVMEMADRAASRGCDVPTEDYTSSSAPCYGALL--------------------ETLNRGLKHLPMEHDISVEAFHPEAVSDASPLDHRFTRSPFPTLHVCYHGLREKGTALNPRVAAAPEGRRKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRGDGRRS-----TDQSGDGASTGGETERK 1350
            TPSVRFRAATTTVAGGIKQAFALATELVTVRH  XXXXXXXXXXXXXXXX        DSDAGASGSKD+S EA+R ETREEDNV+GGVAVEKL    AETEGQGGDEEAS EAA+PPLLPGKELVKRMKNISQYIV RSKTAEEAYSDTWEVVMEMADRAASRGCDVPTEDYTSSSAPCYGALL                    ETLNRGLKHLPMEHDISVEAFHPEAVSDASPLDHRFTRSP+PTLHVCYHGLREKGTALNPRVAAAPE    XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX            TDQSGDGASTGG+ ER+
Sbjct:   52 TPSVRFRAATTTVAGGIKQAFALATELVTVRHHRXXXXXXXXXXXXXXXX--------DSDAGASGSKDISVEAQRWETREEDNVNGGVAVEKLKKLAAETEGQGGDEEASAEAAKPPLLPGKELVKRMKNISQYIVTRSKTAEEAYSDTWEVVMEMADRAASRGCDVPTEDYTSSSAPCYGALLVTPDIATYSSDTFLRFQAKVETLNRGLKHLPMEHDISVEAFHPEAVSDASPLDHRFTRSPYPTLHVCYHGLREKGTALNPRVAAAPEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTDQSGDGASTGGQAERQ 381
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig14068.3173.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FTV7_ECTSI8.210e-13381.19Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KW26_9PHAE1.910e-12881.66Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig14068contigEcto-sp13_S_contig14068:1017..4522 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size1353
Hectar predicted targeting categoryother localisation
Exons6
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-02_002670.1
Cds size1353
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig14068.3173.1prot_Ecto-sp13_S_contig14068.3173.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig14068 1017..4522 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462751.5874138-CDS-Ecto-sp13_S_contig14068:1016..14031681462751.5874138-CDS-Ecto-sp13_S_contig14068:1016..1403Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14068 1017..1403 -
1681462751.598637-CDS-Ecto-sp13_S_contig14068:2290..23311681462751.598637-CDS-Ecto-sp13_S_contig14068:2290..2331Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14068 2291..2331 -
1681462751.606772-CDS-Ecto-sp13_S_contig14068:2701..28221681462751.606772-CDS-Ecto-sp13_S_contig14068:2701..2822Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14068 2702..2822 -
1681462751.6155674-CDS-Ecto-sp13_S_contig14068:3158..36881681462751.6155674-CDS-Ecto-sp13_S_contig14068:3158..3688Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14068 3159..3688 -
1681462751.6241233-CDS-Ecto-sp13_S_contig14068:3996..41421681462751.6241233-CDS-Ecto-sp13_S_contig14068:3996..4142Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14068 3997..4142 -
1681462751.6326017-CDS-Ecto-sp13_S_contig14068:4394..45221681462751.6326017-CDS-Ecto-sp13_S_contig14068:4394..4522Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14068 4395..4522 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig14068.3173.1

>prot_Ecto-sp13_S_contig14068.3173.1 ID=prot_Ecto-sp13_S_contig14068.3173.1|Name=mRNA_Ecto-sp13_S_contig14068.3173.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=451bp
PPTAAATTTSPPPSSALAAVMSAGKGRPLYSRTGTGGCLDTERSTSFSPP
TAAEAIAAAAAAALDEEEAAAAAGGARGAAARMTTTTSTASGMTSSSVAS
RSASATAVPDAHRSSESGGDDNDNREQQQQQQQSTQPRHHTPSVRFRAAT
TTVAGGIKQAFALATELVTVRHHREESRPAAAAAAAAAAAAAASGGGGDS
DAGASGSKDVSAEARRLETREEDNVHGGVAVEKLPAETEGQGGDEEASGE
AAEPPLLPGKELVKRMKNISQYIVARSKTAEEAYSDTWEVVMEMADRAAS
RGCDVPTEDYTSSSAPCYGALLETLNRGLKHLPMEHDISVEAFHPEAVSD
ASPLDHRFTRSPFPTLHVCYHGLREKGTALNPRVAAAPEGRRKKKKKPTA
GKGLGSLSSSSSDATPNSSSSSSSSSRGDGRRSTDQSGDGASTGGETERK
*
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mRNA from alignment at Ecto-sp13_S_contig14068:1017..4522-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig14068.3173.1 ID=mRNA_Ecto-sp13_S_contig14068.3173.1|Name=mRNA_Ecto-sp13_S_contig14068.3173.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3506bp|location=Sequence derived from alignment at Ecto-sp13_S_contig14068:1017..4522- (Ectocarpus species13 EcNAP12_S_4_19m)
CCGCCCACCGCCGCCGCCACCACCACCTCGCCACCGCCCTCGTCCGCGCT
CGCAGCCGTCATGTCTGCCGGGAAGGGCCGTCCCCTCTACTCGCGAACTG
GAACTGGCGGCTGCCTCGATACGGAAAGGTATTATTTTTTTCTCGTCACT
TTTGAACCAGCCCTCTCACACTGGTCGGTGTTCGGAAAGCGCTCTGTAGC
TGCCAACAAGATGCAGCTTTTTTTATTTGTCATCTCCCCCCCCCCTCCCG
CTCCCAGGTTCAATAACGCTAGCCCCAGTAGCAAAAGCGGAATTTGCATC
AGCAGAAGAAACAAGACGAAGCAAAACAGCCAGCCAAGCCCCCCCTGCGG
TAAAACGCTTTGCACCCACCCTCGTCTCAGGTCGACGTCGTTCAGCCCCC
CGACGGCAGCCGAAGCAATAGCTGCTGCCGCCGCGGCCGCTCTCGACGAG
GAGGAAGCGGCAGCAGCGGCCGGCGGTGCCCGCGGCGCAGCCGCCAGGAT
GACGACAACGACTTCAACAGCAAGCGGTGCGTGCGTCTCGGTGCTTTGTG
CATGTGTGCCGTGATTGTTTAGTTCCTCTTGTCGTATCATCGTGTTGCCC
AGGGCCTAATGAACAAAAGCGACGGCCTCTTTATTTCCGTCGGGCGGTAT
GGGGGGTGGCGTGGCGCAGTCGCGGAGACTAGTTTACGCGTGTGAGTTGC
CGTTTTCGAGGAGCAGTTGGGTCGCCTCAAAATATGATGAATGCTTGGTC
CACACCCATCAACACCTTAAGAGCGGGCTTACCCCCCCCCCCCTCTCCCC
GCCCCCCCAAACCCACGCCGGGCGCCTCCTACAGGGATGACGTCTTCCTC
GGTTGCTTCGCGTAGCGCCTCCGCTACGGCTGTCCCCGACGCCCACCGCT
CCTCGGAGAGCGGTGGCGACGACAACGACAACCGCGAGCAGCAGCAGCAG
CAGCAGCAGTCCACCCAACCTCGGCACCACACGCCAAGCGTCAGGTTCAG
GGCCGCCACCACCACCGTGGCCGGCGGGATCAAGCAGGCCTTCGCGCTCG
CGACGGAACTCGTCACGGTTCGCCACCACCGAGAAGAGTCTCGCCCGGCC
GCCGCCGCAGCCGCCGCCGCCGCCGCCGCCGCAGCCGCAAGCGGCGGCGG
TGGTGATAGCGATGCCGGTGCTAGCGGTAGCAAAGACGTCTCCGCGGAGG
CACGGCGGTTGGAAACACGGGAGGAGGACAACGTACACGGGGGTGTGGCC
GTCGAGAAGCTGCCGGCTGAGACGGAGGGGCAGGGCGGCGACGAAGAGGC
CTCCGGGGAAGCGGCTGAGCCGCCGCTGCTGCCGGGCAAGGAGCTGGTCA
AGAGGATGAAAAACGTGGGAGCAAGCGCATTCTTTATTGTATTGTGGCTC
AGATTTAGCCCCCCCCGCCATTTGCCCATTGTCCGTGGCTGCACCCCCTG
CGGAGCACGTGAGACGATTGTGGCCCACAGACCCAAATGGCGAATCCAAT
ATGGCGAGAGTTCACGCGGCCTTTCGCACCTACTAGTCCACGTCCAGCGT
TGCTATCGAACTCGACGCGTGTTCCTTCTTCCCGTTGCACCAGCTGCTGT
TTTCCAACCGTTCGCAACCGCTGCCACCGCTGCTTGCCATCGCCGCTGGT
GTTGATGCTGCTTTCCCCCGTGTGTCGTGTTCCCGGCCGGGCGTGATTAG
ATCTCCCAGTACATCGTGGCCAGGTCGAAGACGGCAGAGGAAGCGTACAG
CGACACGTGGGAGGTGGTCATGGAGATGGCGGATAGGGCTGCCTCCAGGG
GATGCGACGTGCCAACAGAAGGTGATTGTTGTTGTTGTCGTTGAAGCTGT
CGTTGCTCTTCTCCGTCTTGAAGGCAAAGGAGTTCTTTGTTCTTTCGCAC
GCCCCCTTTGTGTTTCAAGCCCTCTGCATACTCTGCTCGAGATGTCAACG
AAGCTCGACTTCAACGATGCTCAACGTGAACGACGCACATGAAGCATGCT
CGATATCAACGAGGCTCGATATCAACGATGCTCGACATCGACGATGCTTA
CGCTACATTGCGCATGCTCGACCTGATAGTGCGTTCTAATCCTCCGACGC
TCCTCCTCAGCTCTGGCTGGTAAGGTTCATGCTCATCATACGCCCCGCTT
CCACCCCATCCCCGTCGACTTCATTCCCGTGCTGCCGACAGATTACACTT
CGAGTTCCGCGCCGTGTTATGGGGCATTGCTGGTGACGCCTGACATTGCA
ACCTANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNCACAGGAAACCTTGAACAGGGGCCTGAAGCACCTCC
CGATGGAGCACGACATCTCCGTAGAGGCCTTCCACCCCGAGGCCGTGAGC
GACGCCAGCCCCCTCGACCACCGCTTCACCCGCTCCCCGTTCCCAACCCT
GCACGTCTGCTACCACGGGCTCCGGGAGAAGGGCACGGCGCTGAACCCCC
GGGTTGCGGCGGCGCCGGAGGGGAGGAGGAAGAAAAAGAAGAAGCCGACG
GCGGGCAAGGGGCTGGGGTCGCTCTCGTCGTCGTCGTCGGACGCTACGCC
GAACAGCAGCAGCAGCAGCAGCAGCAGCAGCCGGGGGGATGGAAGGAGGA
GCACCGACCAGTCGGGAGACGGCGCCAGTACCGGCGGTGAAACGGAGAGG
AAATGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig14068:1017..4522-

>mRNA_Ecto-sp13_S_contig14068.3173.1 ID=mRNA_Ecto-sp13_S_contig14068.3173.1|Name=mRNA_Ecto-sp13_S_contig14068.3173.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1353bp|location=Sequence derived from alignment at Ecto-sp13_S_contig14068:1017..4522- (Ectocarpus species13 EcNAP12_S_4_19m)
CCGCCCACCGCCGCCGCCACCACCACCTCGCCACCGCCCTCGTCCGCGCT
CGCAGCCGTCATGTCTGCCGGGAAGGGCCGTCCCCTCTACTCGCGAACTG
GAACTGGCGGCTGCCTCGATACGGAAAGGTCGACGTCGTTCAGCCCCCCG
ACGGCAGCCGAAGCAATAGCTGCTGCCGCCGCGGCCGCTCTCGACGAGGA
GGAAGCGGCAGCAGCGGCCGGCGGTGCCCGCGGCGCAGCCGCCAGGATGA
CGACAACGACTTCAACAGCAAGCGGGATGACGTCTTCCTCGGTTGCTTCG
CGTAGCGCCTCCGCTACGGCTGTCCCCGACGCCCACCGCTCCTCGGAGAG
CGGTGGCGACGACAACGACAACCGCGAGCAGCAGCAGCAGCAGCAGCAGT
CCACCCAACCTCGGCACCACACGCCAAGCGTCAGGTTCAGGGCCGCCACC
ACCACCGTGGCCGGCGGGATCAAGCAGGCCTTCGCGCTCGCGACGGAACT
CGTCACGGTTCGCCACCACCGAGAAGAGTCTCGCCCGGCCGCCGCCGCAG
CCGCCGCCGCCGCCGCCGCCGCAGCCGCAAGCGGCGGCGGTGGTGATAGC
GATGCCGGTGCTAGCGGTAGCAAAGACGTCTCCGCGGAGGCACGGCGGTT
GGAAACACGGGAGGAGGACAACGTACACGGGGGTGTGGCCGTCGAGAAGC
TGCCGGCTGAGACGGAGGGGCAGGGCGGCGACGAAGAGGCCTCCGGGGAA
GCGGCTGAGCCGCCGCTGCTGCCGGGCAAGGAGCTGGTCAAGAGGATGAA
AAACATCTCCCAGTACATCGTGGCCAGGTCGAAGACGGCAGAGGAAGCGT
ACAGCGACACGTGGGAGGTGGTCATGGAGATGGCGGATAGGGCTGCCTCC
AGGGGATGCGACGTGCCAACAGAAGATTACACTTCGAGTTCCGCGCCGTG
TTATGGGGCATTGCTGGAAACCTTGAACAGGGGCCTGAAGCACCTCCCGA
TGGAGCACGACATCTCCGTAGAGGCCTTCCACCCCGAGGCCGTGAGCGAC
GCCAGCCCCCTCGACCACCGCTTCACCCGCTCCCCGTTCCCAACCCTGCA
CGTCTGCTACCACGGGCTCCGGGAGAAGGGCACGGCGCTGAACCCCCGGG
TTGCGGCGGCGCCGGAGGGGAGGAGGAAGAAAAAGAAGAAGCCGACGGCG
GGCAAGGGGCTGGGGTCGCTCTCGTCGTCGTCGTCGGACGCTACGCCGAA
CAGCAGCAGCAGCAGCAGCAGCAGCAGCCGGGGGGATGGAAGGAGGAGCA
CCGACCAGTCGGGAGACGGCGCCAGTACCGGCGGTGAAACGGAGAGGAAA
TGA
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