mRNA_Ecto-sp13_S_contig14028.3140.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig14028.3140.1
Unique NamemRNA_Ecto-sp13_S_contig14028.3140.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig14028.3140.1 vs. uniprot
Match: D7G727_ECTSI (Coatomer subunit delta n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G727_ECTSI)

HSP 1 Score: 119 bits (299), Expect = 7.430e-30
Identity = 60/61 (98.36%), Postives = 61/61 (100.00%), Query Frame = 1
Query:   61 KVVLSASITTRNGKALLARQFVDMSRIRIEGLLAAFPKLMGTGNKQHTFIETETVRYVYQP 243
            +VVLSASITTRNGKALLARQFVDMSRIRIEGLLAAFPKLMGTGNKQHTFIETETVRYVYQP
Sbjct:   15 QVVLSASITTRNGKALLARQFVDMSRIRIEGLLAAFPKLMGTGNKQHTFIETETVRYVYQP 75          
BLAST of mRNA_Ecto-sp13_S_contig14028.3140.1 vs. uniprot
Match: A0A835ZBZ4_9STRA (Coatomer subunit delta n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZBZ4_9STRA)

HSP 1 Score: 113 bits (282), Expect = 1.580e-27
Identity = 54/61 (88.52%), Postives = 61/61 (100.00%), Query Frame = 1
Query:   61 KVVLSASITTRNGKALLARQFVDMSRIRIEGLLAAFPKLMGTGNKQHTFIETETVRYVYQP 243
            +VVLSA+ITT+NGKALLARQ+VDMSRIRIEGLLAAFPKLMGTGNKQHTFIET++VRY+YQP
Sbjct:   10 QVVLSAAITTKNGKALLARQYVDMSRIRIEGLLAAFPKLMGTGNKQHTFIETDSVRYIYQP 70          
BLAST of mRNA_Ecto-sp13_S_contig14028.3140.1 vs. uniprot
Match: A0A7S3ZRB7_9STRA (Coatomer subunit delta n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S3ZRB7_9STRA)

HSP 1 Score: 106 bits (265), Expect = 3.410e-25
Identity = 47/60 (78.33%), Postives = 59/60 (98.33%), Query Frame = 1
Query:   64 VVLSASITTRNGKALLARQFVDMSRIRIEGLLAAFPKLMGTGNKQHTFIETETVRYVYQP 243
            V+LSA++TT+NG+ALL+RQFVDM+R+R+EGLLAAFPKL GTGNKQHTF+ET++VRYVYQP
Sbjct:    2 VILSAAVTTKNGRALLSRQFVDMNRLRVEGLLAAFPKLQGTGNKQHTFVETDSVRYVYQP 61          
BLAST of mRNA_Ecto-sp13_S_contig14028.3140.1 vs. uniprot
Match: A0A6V1W7X3_HETAK (Coatomer subunit delta (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1W7X3_HETAK)

HSP 1 Score: 100 bits (248), Expect = 9.440e-25
Identity = 46/60 (76.67%), Postives = 57/60 (95.00%), Query Frame = 1
Query:   64 VVLSASITTRNGKALLARQFVDMSRIRIEGLLAAFPKLMGTGNKQHTFIETETVRYVYQP 243
            VVLSA++ T+NG+ L+ARQFV+M+RIRIEGL+AAFPKL+G G+KQHTFIETE+VRYVYQP
Sbjct:    2 VVLSAAVVTKNGRVLVARQFVEMTRIRIEGLMAAFPKLLGGGSKQHTFIETESVRYVYQP 61          
BLAST of mRNA_Ecto-sp13_S_contig14028.3140.1 vs. uniprot
Match: A0A0A9CWY3_ARUDO (Coatomer subunit delta n=1 Tax=Arundo donax TaxID=35708 RepID=A0A0A9CWY3_ARUDO)

HSP 1 Score: 97.4 bits (241), Expect = 1.340e-24
Identity = 48/60 (80.00%), Postives = 57/60 (95.00%), Query Frame = 1
Query:   64 VVLSASITTRNGKALLARQFVDMSRIRIEGLLAAFPKLMGTGNKQHTFIETETVRYVYQP 243
            VVL+ASI +++GKAL++RQFVDMSRIRIEGLLAAFPKL+GTG KQHT++ETE VRYVYQP
Sbjct:    2 VVLAASIVSKSGKALVSRQFVDMSRIRIEGLLAAFPKLVGTG-KQHTYVETENVRYVYQP 60          
BLAST of mRNA_Ecto-sp13_S_contig14028.3140.1 vs. uniprot
Match: A0A7S2MQW5_9STRA (Coatomer subunit delta n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2MQW5_9STRA)

HSP 1 Score: 103 bits (258), Expect = 3.220e-24
Identity = 48/60 (80.00%), Postives = 59/60 (98.33%), Query Frame = 1
Query:   64 VVLSASITTRNGKALLARQFVDMSRIRIEGLLAAFPKLMGTGNKQHTFIETETVRYVYQP 243
            VVLSA++ T+NG+ALLARQ+VDM+RIRIEGLLAAFPKLMGTG++QHTF+ET++VRYVYQP
Sbjct:    2 VVLSAAVCTKNGRALLARQYVDMTRIRIEGLLAAFPKLMGTGSQQHTFLETDSVRYVYQP 61          
BLAST of mRNA_Ecto-sp13_S_contig14028.3140.1 vs. uniprot
Match: A0A8J5LDQ9_ZINOF (Coatomer subunit delta n=1 Tax=Zingiber officinale TaxID=94328 RepID=A0A8J5LDQ9_ZINOF)

HSP 1 Score: 97.8 bits (242), Expect = 7.030e-24
Identity = 49/60 (81.67%), Postives = 55/60 (91.67%), Query Frame = 1
Query:   64 VVLSASITTRNGKALLARQFVDMSRIRIEGLLAAFPKLMGTGNKQHTFIETETVRYVYQP 243
            VVL+ASI T+ GK L++RQFVDMSRIRIEGLLAAFPKL+GTG KQHTF+ETE VRYVYQP
Sbjct:    2 VVLAASIMTKTGKVLVSRQFVDMSRIRIEGLLAAFPKLVGTG-KQHTFVETENVRYVYQP 60          
BLAST of mRNA_Ecto-sp13_S_contig14028.3140.1 vs. uniprot
Match: F0YG49_AURAN (Coatomer subunit delta n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YG49_AURAN)

HSP 1 Score: 102 bits (255), Expect = 7.950e-24
Identity = 47/60 (78.33%), Postives = 57/60 (95.00%), Query Frame = 1
Query:   64 VVLSASITTRNGKALLARQFVDMSRIRIEGLLAAFPKLMGTGNKQHTFIETETVRYVYQP 243
            VVLSAS+ T+NG+ L ARQFV+M+R+R+EGLLAAFPKLMGTGNKQHTFIET++VRYV+QP
Sbjct:    2 VVLSASVCTKNGRCLFARQFVEMNRLRVEGLLAAFPKLMGTGNKQHTFIETDSVRYVWQP 61          
BLAST of mRNA_Ecto-sp13_S_contig14028.3140.1 vs. uniprot
Match: A0A2K3L5C3_TRIPR (Coatomer subunit delta (Fragment) n=2 Tax=Trifolium TaxID=3898 RepID=A0A2K3L5C3_TRIPR)

HSP 1 Score: 96.7 bits (239), Expect = 1.270e-23
Identity = 48/61 (78.69%), Postives = 56/61 (91.80%), Query Frame = 1
Query:   61 KVVLSASITTRNGKALLARQFVDMSRIRIEGLLAAFPKLMGTGNKQHTFIETETVRYVYQP 243
            KVVL+AS+  ++GK L++RQFVDMSRIRIEGLLAAFPKL+GTG KQHT+IETE VRYVYQP
Sbjct:   14 KVVLAASVVGKSGKVLVSRQFVDMSRIRIEGLLAAFPKLIGTG-KQHTYIETENVRYVYQP 73          
BLAST of mRNA_Ecto-sp13_S_contig14028.3140.1 vs. uniprot
Match: A0A7S2MU87_9STRA (Coatomer subunit delta (Fragment) n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2MU87_9STRA)

HSP 1 Score: 95.1 bits (235), Expect = 1.300e-23
Identity = 47/60 (78.33%), Postives = 56/60 (93.33%), Query Frame = 1
Query:   64 VVLSASITTRNGKALLARQFVDMSRIRIEGLLAAFPKLMGTGNKQHTFIETETVRYVYQP 243
            VVLSASI TR GKAL++RQFV+M+R+R+EGLLAAFPKLMG  +KQHTF+ET+TVRYVYQP
Sbjct:    2 VVLSASICTRGGKALVSRQFVEMNRMRVEGLLAAFPKLMGH-SKQHTFVETDTVRYVYQP 60          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig14028.3140.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G727_ECTSI7.430e-3098.36Coatomer subunit delta n=2 Tax=Ectocarpus TaxID=28... [more]
A0A835ZBZ4_9STRA1.580e-2788.52Coatomer subunit delta n=1 Tax=Tribonema minus Tax... [more]
A0A7S3ZRB7_9STRA3.410e-2578.33Coatomer subunit delta n=1 Tax=Pelagomonas calceol... [more]
A0A6V1W7X3_HETAK9.440e-2576.67Coatomer subunit delta (Fragment) n=1 Tax=Heterosi... [more]
A0A0A9CWY3_ARUDO1.340e-2480.00Coatomer subunit delta n=1 Tax=Arundo donax TaxID=... [more]
A0A7S2MQW5_9STRA3.220e-2480.00Coatomer subunit delta n=1 Tax=Dictyocha speculum ... [more]
A0A8J5LDQ9_ZINOF7.030e-2481.67Coatomer subunit delta n=1 Tax=Zingiber officinale... [more]
F0YG49_AURAN7.950e-2478.33Coatomer subunit delta n=1 Tax=Aureococcus anophag... [more]
A0A2K3L5C3_TRIPR1.270e-2378.69Coatomer subunit delta (Fragment) n=2 Tax=Trifoliu... [more]
A0A7S2MU87_9STRA1.300e-2378.33Coatomer subunit delta (Fragment) n=1 Tax=Helicoth... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig14028contigEcto-sp13_S_contig14028:1..889 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score120.2
Seed ortholog evalue4.6e-25
Seed eggNOG ortholog2880.D7G727
Model size243
KEGG koko:K20471
Hectar predicted targeting categoryother localisation
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005798,GO:0005829,GO:0005911,GO:0009506,GO:0016020,GO:0030054,GO:0031410,GO:0031982,GO:0043226,GO:0043227,GO:0043229,GO:0044424,GO:0044444,GO:0044464,GO:0055044,GO:0097708
Exons2
EggNOG free text desc.retrograde vesicle-mediated transport, Golgi to ER
EggNOG OGsKOG2635@1,KOG2635@2759
Cds size243
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04131
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462749.192554-CDS-Ecto-sp13_S_contig14028:0..561681462749.192554-CDS-Ecto-sp13_S_contig14028:0..56Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14028 1..56 -
1681462749.2037826-CDS-Ecto-sp13_S_contig14028:702..8891681462749.2037826-CDS-Ecto-sp13_S_contig14028:702..889Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14028 703..889 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig14028.3140.1prot_Ecto-sp13_S_contig14028.3140.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig14028 1..889 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig14028.3140.1

>prot_Ecto-sp13_S_contig14028.3140.1 ID=prot_Ecto-sp13_S_contig14028.3140.1|Name=mRNA_Ecto-sp13_S_contig14028.3140.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=81bp
HGRPPNVYPFASFPGLKRLPKVVLSASITTRNGKALLARQFVDMSRIRIE
GLLAAFPKLMGTGNKQHTFIETETVRYVYQP
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mRNA from alignment at Ecto-sp13_S_contig14028:1..889-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig14028.3140.1 ID=mRNA_Ecto-sp13_S_contig14028.3140.1|Name=mRNA_Ecto-sp13_S_contig14028.3140.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=889bp|location=Sequence derived from alignment at Ecto-sp13_S_contig14028:1..889- (Ectocarpus species13 EcNAP12_S_4_19m)
CACGGCAGACCCCCGAACGTGTACCCATTCGCTTCCTTCCCCGGATTAAA ACGCCTCCCGAAGGTGGTTCTTTCGGCATCGATTACGACACGGAACGGGA AGGCTCTCCTGGCGAGGCAGTTCGTCGACATGAGCCGCATCCGTATCGAG GGTCTCTTGGCTGCTTTCCCGAAGCTCATGGGCACTGGTGAGAACGAGCG CCCCGCTCGATGGATTTACGAAGTCAGACAGCCGTTCGAAATACGGAGTC CATGCTTCTCCGCTTGCGTATTCGATGGGCTTCAACCGCAGGTGTCGAAT CCTCAAAGTCATCGTCAGGCATTTCCGGTGCTGGAGTTTCGTCGTGTAGA GTGCCGATTCGACGCACGTTGCGCGGTTTGGCTTGTTGACACCGCAAGTT CCGCGAAGTTGATAGTGGCAAGAGTTGCCGCTTCGACTGTCCCAGCAGGG CCGTTTGCTTCGATGTACACTGTAGTCAGTGCTGGGCTGTGATTAGCATC GCTAGTCCGGCTCTTTGTACCTGGTCTCGGTACTGACCCACGTACCAGTC CTGTGAGAACCGAGTTGTTGGGGTAATGTACCTCTGGTGAAGAGGTTCCT CAGCGTTGACGCAGATCCAGCAGCCGCGTTGTGTCCGTCTTCGTCAACCC AACTTTTTTTTGGCATTTCTTTGCGCTCGTACTTGGCATTTTGTACTGAT GCTTTTGTTTTTCTCGGGTAACGTGGAGGTCGCTTCGTCTGTCTTCTTTT GGTGACTTGTTTTGTTTACCGTGTCCCGCGTATGTTCGTCGGTCGATCTA TCTGCTCATACGCATACGCACGCGCGCTCGCAGGCAACAAGCAGCACACG TTCATCGAGACCGAGACGGTCCGGTACGTGTACCAGCCG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig14028:1..889-

>mRNA_Ecto-sp13_S_contig14028.3140.1 ID=mRNA_Ecto-sp13_S_contig14028.3140.1|Name=mRNA_Ecto-sp13_S_contig14028.3140.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=243bp|location=Sequence derived from alignment at Ecto-sp13_S_contig14028:1..889- (Ectocarpus species13 EcNAP12_S_4_19m)
CACGGCAGACCCCCGAACGTGTACCCATTCGCTTCCTTCCCCGGATTAAA
ACGCCTCCCGAAGGTGGTTCTTTCGGCATCGATTACGACACGGAACGGGA
AGGCTCTCCTGGCGAGGCAGTTCGTCGACATGAGCCGCATCCGTATCGAG
GGTCTCTTGGCTGCTTTCCCGAAGCTCATGGGCACTGGCAACAAGCAGCA
CACGTTCATCGAGACCGAGACGGTCCGGTACGTGTACCAGCCG
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