mRNA_Ecto-sp13_S_contig14016.3136.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig14016.3136.1
Unique NamemRNA_Ecto-sp13_S_contig14016.3136.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig14016.3136.1 vs. uniprot
Match: A0A6H5JF41_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JF41_9PHAE)

HSP 1 Score: 571 bits (1471), Expect = 2.320e-196
Identity = 315/344 (91.57%), Postives = 322/344 (93.60%), Query Frame = 2 
Query:  263 LRERPFVRQKWLKRLRHQTAINIESDHRDASSVAFSPSNTTSAPASARAPASSSGQEDVYTPPSALTRVGREHVRSVVELALSEARVNAFVVISSLEGLLSVATERLGREGSVGTPKSLHDVSQAGGRSEGGDKTNRTGQSSQDSAAKLGGRSTKLYPGPGRNDSGSEDGSLRRAQRGHPTKPPSTKGSSPGRGESGAALCVRLGAVPAVLGCLEEHAGHKKIEPLAVRLLWVFASEVTAAAAIRGNPAVAAACVARMTPSAALPAACAVDDKGGTANTSTASFLSTGQASHGGEAGGDPGYDRRKGSASRRKTLVNATSTTEASSEKFDSNGTSAVKPPDLGG 1294
            +RERPFVRQKWLKRLRH+TAINIESDHRDASS AFSPSNTTS PASARAPA SSGQEDV+TPPSALTRVGREHVRSVVELALSEARVNAFVVISSLEGLLSVATERLGREGSVGTP SLHDVSQAG RSEGGD+TNRTG+SSQ SAAKLGGRSTKLY G GRNDSGSEDGSLRRAQRGHPT P STKGSSPG GESGAALCVRLGAVPAVLGCLEEHAGHK IEPLAVRLLWVFASEVTAAAAIRGNPAVAAAC ARMTPSAALPA CA+DD GGTANTSTASFLSTGQASHG E G DPGYDRRKGSA RRKTL NATST EAS+EKFDSNGTSAVKPP LGG
Sbjct:    1 MRERPFVRQKWLKRLRHETAINIESDHRDASSAAFSPSNTTSTPASARAPAFSSGQEDVHTPPSALTRVGREHVRSVVELALSEARVNAFVVISSLEGLLSVATERLGREGSVGTPNSLHDVSQAGRRSEGGDETNRTGESSQYSAAKLGGRSTKLYSGAGRNDSGSEDGSLRRAQRGHPTTPSSTKGSSPGIGESGAALCVRLGAVPAVLGCLEEHAGHKTIEPLAVRLLWVFASEVTAAAAIRGNPAVAAACAARMTPSAALPATCAIDDNGGTANTSTASFLSTGQASHGREVGDDPGYDRRKGSAGRRKTLGNATSTMEASAEKFDSNGTSAVKPPGLGG 344
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BLAST of mRNA_Ecto-sp13_S_contig14016.3136.1 vs. uniprot
Match: D7FKN6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FKN6_ECTSI)

HSP 1 Score: 509 bits (1311), Expect = 1.770e-172
Identity = 288/344 (83.72%), Postives = 298/344 (86.63%), Query Frame = 2 
Query:  263 LRERPFVRQKWLKRLRHQTAINIESDHRDASSVAFSPSNTTSAPASARAPASSSGQEDVYTPPSALTRVGREHVRSVVELALSEARVNAFVVISSLEGLLSVATERLGREGSVGTPKSLHDVSQAGGRSEGGDKTNRTGQSSQDSAAKLGGRSTKLYPGPGRNDSGSEDGSLRRAQRGHPTKPPSTKGSSPGRGESGAALCVRLGAVPAVLGCLEEHAGHKKIEPLAVRLLWVFASEVTAAAAIRGNPAVAAACVARMTPSAALPAACAVDDKGGTANTSTASFLSTGQASHGGEAGGDPGYDRRKGSASRRKTLVNATSTTEASSEKFDSNGTSAVKPPDLGG 1294
            +RERPFVRQKWLKRLRHQTAINIESDHRDASS A SPSNTTS PASARAPA SSGQED +TPPSALTRVGREHVRSVV+LALSEARVNAFVVISSLEGLLSVA ER+GREG VGTP SL +VSQAGGRSEGG+K  R G+SSQD AA LGGR+TKLYPGPGRNDSGSEDGSLRRA RGHPT P ST GSS GRGESGAALCVRL AVPAVLGCLEEHAGHKKIEPLAVRLLWVFASEVTAAAAIRGNPAVAAAC ARMTPS              TAN STASFLSTGQAS GG  G DPGYD RKGSA  RKTL NATSTTEAS+EK DSNGTSA+KP DLGG
Sbjct:    1 MRERPFVRQKWLKRLRHQTAINIESDHRDASSAALSPSNTTSTPASARAPAFSSGQEDAHTPPSALTRVGREHVRSVVQLALSEARVNAFVVISSLEGLLSVAAERIGREGPVGTPSSLREVSQAGGRSEGGNKKKRIGESSQDPAANLGGRATKLYPGPGRNDSGSEDGSLRRAHRGHPTTPSSTNGSSTGRGESGAALCVRLEAVPAVLGCLEEHAGHKKIEPLAVRLLWVFASEVTAAAAIRGNPAVAAACAARMTPS------------DNTANASTASFLSTGQASDGGGVGDDPGYDGRKGSAGGRKTLGNATSTTEASAEKVDSNGTSAMKPLDLGG 332
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig14016.3136.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JF41_9PHAE2.320e-19691.57Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FKN6_ECTSI1.770e-17283.72Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig14016contigEcto-sp13_S_contig14016:2907..4492 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size1296
Hectar predicted targeting categoryother localisation
Exons2
Cds size261
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462748.8905325-UTR-Ecto-sp13_S_contig14016:2906..29851681462748.8905325-UTR-Ecto-sp13_S_contig14016:2906..2985Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig14016 2907..2985 +
1681462748.9017825-UTR-Ecto-sp13_S_contig14016:3277..42311681462748.9017825-UTR-Ecto-sp13_S_contig14016:3277..4231Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig14016 3278..4231 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462748.9098225-CDS-Ecto-sp13_S_contig14016:4231..44921681462748.9098225-CDS-Ecto-sp13_S_contig14016:4231..4492Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14016 4232..4492 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig14016.3136.1prot_Ecto-sp13_S_contig14016.3136.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig14016 4232..4492 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig14016.3136.1

>prot_Ecto-sp13_S_contig14016.3136.1 ID=prot_Ecto-sp13_S_contig14016.3136.1|Name=mRNA_Ecto-sp13_S_contig14016.3136.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=87bp
MTPSAALPAACAVDDKGGTANTSTASFLSTGQASHGGEAGGDPGYDRRKG
SASRRKTLVNATSTTEASSEKFDSNGTSAVKPPDLGG
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mRNA from alignment at Ecto-sp13_S_contig14016:2907..4492+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig14016.3136.1 ID=mRNA_Ecto-sp13_S_contig14016.3136.1|Name=mRNA_Ecto-sp13_S_contig14016.3136.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1586bp|location=Sequence derived from alignment at Ecto-sp13_S_contig14016:2907..4492+ (Ectocarpus species13 EcNAP12_S_4_19m)
CGGGACGTTGGATACCGGCAGAGTATGCCATCTCCAAACAACTGCAGTGG
ACCGGATACTGGACCTGCTGTAGGAACAAGTGAGAATGAGTCCCAAGGAG
GTGATGAGAGAGAAAAAGACATGCGTTGACATCTCCACCGTCTGAGCTAC
AGTCATCCATATACAGGAGCGGTTGGCTCGTGGAACCAGCGTCGGTGGTG
CGTGCTCTTGGTTTCGCGTTTCGTGGGTGCAGCTACTACAACTGTCAATA
CCTCTGCACCTGGCTGTTTTTTCTGGCCTAACTCTGAACTCGTCTCAACT
GCGAATCGCTGTTGAACCGCAGAACGGCTTATACCACACATTGCCTCGAT
TTCGACGCTCGCGTAAGGCAGCGGGAAGCCGAACACCAGCGCATCTCAGC
CGAAAAGCTAAACGGCGCAAGGCGCCCGGTGGCGGAAAAATTTCGAGCTC
AGTGGGAAAGGACGGGGAACACTGCTTCACCATCCTACCCACTGGGTGAT
GTTGTTTGTGGTGGTAGCAGAGGCAGCACATCCTCTAGAGGGGTCTACCA
GCCGTTGCGGGAGAGACCGTTCGTACGACAAAAGTGGTTGAAGCGGCTTC
GACATCAGACCGCCATAAACATTGAATCAGACCACCGGGACGCTTCTTCT
GTTGCGTTTTCCCCTTCCAACACTACCTCCGCTCCCGCTTCAGCTCGTGC
CCCCGCGTCATCTTCCGGTCAAGAAGATGTCTATACGCCTCCCTCGGCGT
TGACTCGTGTGGGGAGGGAGCACGTCCGGAGCGTAGTGGAGCTGGCGCTG
TCGGAAGCGCGGGTCAACGCATTCGTCGTGATCAGCTCCCTCGAGGGGCT
CTTGTCGGTGGCAACGGAACGGTTAGGACGGGAGGGATCAGTCGGAACTC
CTAAAAGCCTCCACGATGTCAGCCAAGCCGGCGGCAGAAGTGAAGGTGGA
GACAAAACAAACCGCACCGGCCAGTCTTCACAAGACTCTGCTGCAAAGCT
TGGCGGAAGGTCTACCAAGCTCTACCCCGGCCCCGGACGTAACGACAGCG
GCAGTGAAGATGGTTCTCTTCGGCGCGCACAGCGCGGCCACCCGACCAAG
CCCCCCTCGACAAAGGGCAGCAGCCCTGGCAGAGGAGAGAGCGGTGCTGC
TCTGTGCGTAAGGCTCGGGGCGGTTCCCGCCGTGCTTGGCTGTCTGGAGG
AGCACGCCGGCCACAAGAAGATCGAGCCCCTGGCGGTCCGGCTCCTGTGG
GTGTTTGCGAGCGAGGTCACAGCCGCTGCGGCTATCAGAGGGAACCCCGC
CGTAGCCGCTGCTTGCGTCGCCAGAATGACACCGTCAGCGGCTCTCCCTG
CTGCGTGTGCCGTCGACGACAAAGGCGGCACGGCGAACACATCCACAGCA
AGCTTCCTGTCGACAGGACAAGCTTCGCATGGAGGAGAGGCAGGAGGTGA
TCCGGGTTACGATCGGAGGAAGGGAAGCGCCAGCAGAAGAAAGACTCTGG
TAAATGCGACATCGACCACGGAAGCGTCTTCTGAAAAGTTCGACAGCAAC
GGCACGTCGGCGGTGAAGCCCCCTGACCTTGGTGGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig14016:2907..4492+

>mRNA_Ecto-sp13_S_contig14016.3136.1 ID=mRNA_Ecto-sp13_S_contig14016.3136.1|Name=mRNA_Ecto-sp13_S_contig14016.3136.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=261bp|location=Sequence derived from alignment at Ecto-sp13_S_contig14016:2907..4492+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGACACCGTCAGCGGCTCTCCCTGCTGCGTGTGCCGTCGACGACAAAGG
CGGCACGGCGAACACATCCACAGCAAGCTTCCTGTCGACAGGACAAGCTT
CGCATGGAGGAGAGGCAGGAGGTGATCCGGGTTACGATCGGAGGAAGGGA
AGCGCCAGCAGAAGAAAGACTCTGGTAAATGCGACATCGACCACGGAAGC
GTCTTCTGAAAAGTTCGACAGCAACGGCACGTCGGCGGTGAAGCCCCCTG
ACCTTGGTGGA
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