mRNA_Ecto-sp13_S_contig14011.3132.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig14011.3132.1 vs. uniprot
Match: D7G7L9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7L9_ECTSI) HSP 1 Score: 138 bits (347), Expect = 4.780e-34 Identity = 68/69 (98.55%), Postives = 69/69 (100.00%), Query Frame = 3
Query: 288 MSRMETGMVEWVNTFELSSRCSSLSDLADGVALSEVLLGIAPGLFDPSAIKRDVGDNWALKLNNLKKVS 494
MSRMETGMVEWVNTFELSSRCSSLSDLADGVALSEVLLGIAPGLFDPSAIKRDVGDNWALKLNNLKK+S
Sbjct: 1 MSRMETGMVEWVNTFELSSRCSSLSDLADGVALSEVLLGIAPGLFDPSAIKRDVGDNWALKLNNLKKMS 69
BLAST of mRNA_Ecto-sp13_S_contig14011.3132.1 vs. uniprot
Match: A0A7S2YS32_9STRA (Hypothetical protein (Fragment) n=1 Tax=Amphiprora paludosa TaxID=265537 RepID=A0A7S2YS32_9STRA) HSP 1 Score: 106 bits (265), Expect = 3.220e-24 Identity = 58/125 (46.40%), Postives = 81/125 (64.80%), Query Frame = 3
Query: 309 MVEWVNTFE--LSSRCSSLSDLADGVALSEVLLGIAPGLFDPSAIKRDVGDNWALKLNNLKKVSFNLESFYREGL--GFEYPEIDLDLTSVARTADADGIAAMVQLLVGAAVSCQGKADYIQAIM 671
M+E+V TF S +L+DL+DGV L E L IAP FDP+ I R +GDNWALK +NL+K+ NLE +Y EGL ++ I LT++A+ +D + IA +V+LL AAV+C K Y+Q I+
Sbjct: 101 MIEFVGTFASLTGSAPETLADLSDGVTLFEALSEIAPVYFDPTTIARHLGDNWALKSSNLRKLIRNLEDYYHEGLFKDADFGAIQNSLTAIAKESDTEAIANLVELLAAAAVTCADKGTYVQRIL 225
BLAST of mRNA_Ecto-sp13_S_contig14011.3132.1 vs. uniprot
Match: A0A1Z5KLR0_FISSO (Uncharacterized protein n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5KLR0_FISSO) HSP 1 Score: 108 bits (269), Expect = 1.610e-23 Identity = 58/138 (42.03%), Postives = 86/138 (62.32%), Query Frame = 3
Query: 264 DQRNWGRVMSRMETGMVEWVNTFELSSRC-SSLSDLADGVALSEVLLGIAPGLFDPSAIKRDVGDNWALKLNNLKKVSFNLESFYREGLGFEYPEIDLDLTSVARTADADGIAAMVQLLVGAAVSCQGKADYIQAIMQ 674
DQRN M+E++ +F S+ + +S+L+DGV + E L IAP FDP+ I R +G+NW LK +N++K+ NL+ F++E L +D T +AR ADAD +A++V+L+ AAV+C K DYIQ IMQ
Sbjct: 4 DQRN---------LAMIEFLASFSTVSQAPADISELSDGVVVFEALSEIAPSYFDPTTIARHLGENWVLKSSNIRKLVRNLQQFFQEDLKKTADFAAIDQTKIAREADADAVASLVELVAAAAVTCSSKGDYIQRIMQ 132
BLAST of mRNA_Ecto-sp13_S_contig14011.3132.1 vs. uniprot
Match: A0A7S2IHL6_9STRA (Hypothetical protein n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2IHL6_9STRA) HSP 1 Score: 101 bits (252), Expect = 3.360e-21 Identity = 54/109 (49.54%), Postives = 73/109 (66.97%), Query Frame = 3
Query: 351 SSLSDLADGVALSEVLLGIAPGLFDPSAIKRDVGDNWALKLNNLKKVSFNLESFYREGLG--FEYPEIDLDLTSVARTADADGIAAMVQLLVGAAVSCQGKADYIQAIM 671
S+LS+L DGV L E L IAP FDP+ I RD+GDNWALK +NL+K+ NLES+Y E LG ++ I ++S+AR D +GI +V+L+ GA V C+ K +I IM
Sbjct: 29 STLSELGDGVCLFEALSEIAPDHFDPTTIARDLGDNWALKSSNLRKLCRNLESYYHEILGKDADFDSIGSSISSIARHGDHEGITVLVELVAGAVVHCEDKDVFIGRIM 137
BLAST of mRNA_Ecto-sp13_S_contig14011.3132.1 vs. uniprot
Match: A0A7S2SH48_9STRA (Hypothetical protein (Fragment) n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2SH48_9STRA) HSP 1 Score: 96.7 bits (239), Expect = 4.090e-21 Identity = 53/125 (42.40%), Postives = 80/125 (64.00%), Query Frame = 3
Query: 309 MVEWVNTFELSS--RCSSLSDLADGVALSEVLLGIAPGLFDPSAIKRDVGDNWALKLNNLKKVSFNLESFYREGLG--FEYPEIDLDLTSVARTADADGIAAMVQLLVGAAVSCQGKADYIQAIM 671
M+++V F S + +S +L DGV L E L I+P FDPS I R +GDNWALK +NL+K+ NLE++Y E L + ++ + S++R +D D IA +V+L+ AAV+C+ +ADY+ IM
Sbjct: 13 MLDFVGCFPTISGLQPTSFEELGDGVMLFEALSHISPRDFDPSTIARGLGDNWALKSSNLRKLVRNLETYYHEVLQKTANFEDVAASIPSISRNSDKDAIAKIVELVAAAAVTCENRADYVGWIM 137
BLAST of mRNA_Ecto-sp13_S_contig14011.3132.1 vs. uniprot
Match: A0A1E7FVU8_9STRA (Uncharacterized protein n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FVU8_9STRA) HSP 1 Score: 101 bits (251), Expect = 4.400e-21 Identity = 57/135 (42.22%), Postives = 83/135 (61.48%), Query Frame = 3
Query: 285 VMSRMETGMVEWVNTFELSSRCS--SLSDLADGVALSEVLLGIAPGLFDPSAIKRDVGDNWALKLNNLKKVSFNLESFYREGLGFE----YPEIDLDLTSVARTADADGIAAMVQLLVGAAVSCQGKADYIQAIM 671
V + + MVE++ TF S LSDL+DGVAL EVL IAP FDP+ I R +GDNWALK +NL+K+ NL+ +Y E L + + E+ +L+ ++RT D I +V+L+ AAV+C K +++ IM
Sbjct: 4 VNAARQRAMVEFLGTFPTLSGAPPLELSDLSDGVALFEVLSEIAPNHFDPTTIARQLGDNWALKSSNLRKLVRNLQYYYHEDLQKDAAESFREVSSNLSKISRTGDTHAIEPLVELVAAAAVTCPQKTEFVGRIM 138
BLAST of mRNA_Ecto-sp13_S_contig14011.3132.1 vs. uniprot
Match: HOOK_BRAFL (Protein Hook homolog n=10 Tax=Branchiostoma TaxID=7737 RepID=HOOK_BRAFL) HSP 1 Score: 101 bits (251), Expect = 4.880e-21 Identity = 53/125 (42.40%), Postives = 80/125 (64.00%), Query Frame = 3
Query: 309 MVEWVNTFELSSRCSSLSDLADGVALSEVLLGIAPGLFDPS---AIKRDVGDNWALKLNNLKKVSFNLESFYREGLGFEYPEIDL-DLTSVARTADADGIAAMVQLLVGAAVSCQGKADYIQAIM 671
+V+W+ TF L++ ++ DL DGVA+SE L IAP F S IK+D G+NW L+++NLKKV + +Y E LG + + L D+TS+A D + + ++QL++G AV+C K +YIQ IM
Sbjct: 10 LVQWLQTFNLNAPHKTVEDLGDGVAMSEALCQIAPDYFSESWFGKIKQDAGENWRLRMSNLKKVLTGVLDYYSEVLGQQINDFTLPDVTSIAENYDVEEMGRLLQLILGCAVNCDRKQEYIQNIM 134
BLAST of mRNA_Ecto-sp13_S_contig14011.3132.1 vs. uniprot
Match: A0A8B7Y442_ACAPL (protein Hook homolog 3-like isoform X1 n=6 Tax=Acanthaster planci TaxID=133434 RepID=A0A8B7Y442_ACAPL) HSP 1 Score: 100 bits (248), Expect = 1.230e-20 Identity = 52/125 (41.60%), Postives = 80/125 (64.00%), Query Frame = 3
Query: 309 MVEWVNTFELSSRCSSLSDLADGVALSEVLLGIAPGLFDP---SAIKRDVGDNWALKLNNLKKVSFNLESFYREGLGFEYPEIDL-DLTSVARTADADGIAAMVQLLVGAAVSCQGKADYIQAIM 671
++ WV TF L S+++L DGVALS++L IAP F+ S IK++VGDNW ++++NLKKV + FY + LG + + L D+T +A D D + ++QL++G AV+C+ K +YI IM
Sbjct: 10 LLTWVQTFNLDCSPESVAELTDGVALSQILRQIAPTFFNTGWYSRIKKEVGDNWRIRVSNLKKVLEGILDFYNDVLGQQICDFKLPDVTKIAERRDLDELGRLLQLVLGCAVNCEHKEEYINVIM 134
BLAST of mRNA_Ecto-sp13_S_contig14011.3132.1 vs. uniprot
Match: A0A7S1GI83_CYCTE (Hypothetical protein (Fragment) n=1 Tax=Cyclophora tenuis TaxID=216820 RepID=A0A7S1GI83_CYCTE) HSP 1 Score: 98.2 bits (243), Expect = 4.910e-20 Identity = 56/128 (43.75%), Postives = 80/128 (62.50%), Query Frame = 3
Query: 309 MVEWVNTFELSSRC--SSLSDLADGVALSEVLLGIAPGLFDPSAIKRDVGDNWALKLNNLKKVSFNLESFYREGLGFEYPEIDLDLTS-----VARTADADGIAAMVQLLVGAAVSCQGKADYIQAIM 671
MVE+V +F S S +++L DGVAL E L IAP FDP+ I R +GDNWALK +NL+K+ NLE FY E LG + D DL + +AR++D IA + +L+ AAV+C+ + +++ IM
Sbjct: 17 MVEFVGSFPTLSGPPPSDIAELGDGVALFEALSEIAPDYFDPTTIARHLGDNWALKSSNLRKLLRNLEQFYHESLG---KDADFDLQTSKVGAIARSSDRGAIAELFELVAAAAVTCENRGEFVGRIM 141
BLAST of mRNA_Ecto-sp13_S_contig14011.3132.1 vs. uniprot
Match: A0A8C7MFZ7_ONCKI (Protein Hook homolog 1 n=9 Tax=Salmoninae TaxID=504568 RepID=A0A8C7MFZ7_ONCKI) HSP 1 Score: 98.2 bits (243), Expect = 5.610e-20 Identity = 52/125 (41.60%), Postives = 75/125 (60.00%), Query Frame = 3
Query: 309 MVEWVNTFELSSRCSSLSDLADGVALSEVLLGIAPGLFDPS---AIKRDVGDNWALKLNNLKKVSFNLESFYREGLGFEYPEIDL-DLTSVARTADADGIAAMVQLLVGAAVSCQGKADYIQAIM 671
++ W+ TF S C+++++L GVA+S+ L I P F S IK DVGDNW LK+NNLKK+ + +Y E L + E L DL VA +D + ++QL++G AV C+ K +YIQ IM
Sbjct: 12 LIIWLQTFNTGSPCTAVAELTTGVAMSQALHQIDPAWFSKSWLGRIKEDVGDNWRLKMNNLKKILQMMVDYYNEALSQQIQEFPLPDLVKVAEHSDRVELGRLLQLILGCAVKCERKQEYIQVIM 136 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig14011.3132.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig14011.3132.1 >prot_Ecto-sp13_S_contig14011.3132.1 ID=prot_Ecto-sp13_S_contig14011.3132.1|Name=mRNA_Ecto-sp13_S_contig14011.3132.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=129bp MSRMETGMVEWVNTFELSSRCSSLSDLADGVALSEVLLGIAPGLFDPSAIback to top mRNA from alignment at Ecto-sp13_S_contig14011:205..4306- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig14011.3132.1 ID=mRNA_Ecto-sp13_S_contig14011.3132.1|Name=mRNA_Ecto-sp13_S_contig14011.3132.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=4102bp|location=Sequence derived from alignment at Ecto-sp13_S_contig14011:205..4306- (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig14011:205..4306- >mRNA_Ecto-sp13_S_contig14011.3132.1 ID=mRNA_Ecto-sp13_S_contig14011.3132.1|Name=mRNA_Ecto-sp13_S_contig14011.3132.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=387bp|location=Sequence derived from alignment at Ecto-sp13_S_contig14011:205..4306- (Ectocarpus species13 EcNAP12_S_4_19m)back to top |