prot_Ecto-sp13_S_contig13993.3111.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig13993.3111.1
Unique Nameprot_Ecto-sp13_S_contig13993.3111.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length210
Homology
BLAST of mRNA_Ecto-sp13_S_contig13993.3111.1 vs. uniprot
Match: A0A6H5JEB4_9PHAE (AAA domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JEB4_9PHAE)

HSP 1 Score: 402 bits (1032), Expect = 3.650e-139
Identity = 207/209 (99.04%), Postives = 208/209 (99.52%), Query Frame = 0
Query:    1 MTPDAQSALRRTMETYSTVTRFCLICNYVTRIIEPLASRCAKFRFSALGQGAMLDRLSYISREEDVKITADGLQAIVDLSGGDMRKAVTAMQSASQFYAGAEVTPEVLVDIAGKIPAEVKDALWSAIKSGSYNKIVAAVDDFMSSGYPLSTLLEDMQEATVADTTIPDHKKADICRRIAEADRCLIDGCNEELQLLDLASVAARSCCSQ 209
            MTPDAQSALRRTMETYSTVTRFCLICNYVTRIIEPLASRCAKFRFSALGQGAMLDRLSYISREEDVKITADGLQAIVDLSGGDMRKAVTAMQSASQFYAGAEVTPEVLVDIAGKIPAEVKDALWSAIKSGSY+KIVAAVDDFMSSGYPLSTLLEDMQEATVADTTIPDH KADICRRIAEADRCLIDGCNEELQLLDLASVAARSCCSQ
Sbjct:  146 MTPDAQSALRRTMETYSTVTRFCLICNYVTRIIEPLASRCAKFRFSALGQGAMLDRLSYISREEDVKITADGLQAIVDLSGGDMRKAVTAMQSASQFYAGAEVTPEVLVDIAGKIPAEVKDALWSAIKSGSYHKIVAAVDDFMSSGYPLSTLLEDMQEATVADTTIPDHNKADICRRIAEADRCLIDGCNEELQLLDLASVAARSCCSQ 354          
BLAST of mRNA_Ecto-sp13_S_contig13993.3111.1 vs. uniprot
Match: A0A836CA10_9STRA (P-loop containing nucleoside triphosphate hydrolase protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CA10_9STRA)

HSP 1 Score: 227 bits (579), Expect = 1.760e-70
Identity = 118/206 (57.28%), Postives = 149/206 (72.33%), Query Frame = 0
Query:    1 MTPDAQSALRRTMETYSTVTRFCLICNYVTRIIEPLASRCAKFRFSALGQGAMLDRLSYISREEDVKITADGLQAIVDLSGGDMRKAVTAMQSASQFYAGA--EVTPEVLVDIAGKIPAEVKDALWSAIKSGSYNKIVAAVDDFMSSGYPLSTLLEDMQEATVADTTIPDHKKADICRRIAEADRCLIDGCNEELQLLDLASVAAR 204
            MTPDAQ+ALRRTMETY+ VTRFCLICNYVTRIIEPLASRCAKFRF AL    ML RL +I+  E V I+A G QA++ L+GGDMRKAVT +QSA Q Y G+  E+T E L +++G++   + + +W A++SG +  +  AVD FM  G PLS+LL  + E T+AD  IPD  KA IC++I+EAD  L+ G NEELQLLD+     R
Sbjct:  140 MTPDAQAALRRTMETYTKVTRFCLICNYVTRIIEPLASRCAKFRFRALSNETMLTRLDHIAAAEHVSISAAGKQAVIGLAGGDMRKAVTTLQSAHQLYGGSGTEITAEALAEVSGRVSPALVEQIWLAVRSGDFRTLTDAVDAFMFEGSPLSSLLTTLLEDTLADDAIPDVTKAAICKKISEADYSLLLGANEELQLLDVGGFMMR 345          
BLAST of mRNA_Ecto-sp13_S_contig13993.3111.1 vs. uniprot
Match: A0A1Y1HK96_KLENI (Replication factor C subunit RFC4 n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1HK96_KLENI)

HSP 1 Score: 210 bits (535), Expect = 5.010e-64
Identity = 104/208 (50.00%), Postives = 147/208 (70.67%), Query Frame = 0
Query:    1 MTPDAQSALRRTMETYSTVTRFCLICNYVTRIIEPLASRCAKFRFSALGQGAMLDRLSYISREEDVKITADGLQAIVDLSGGDMRKAVTAMQSASQFYAGAEVTPEVLVDIAGKIPAEVKDALWSAIKSGSYNKIVAAVDDFMSSGYPLSTLLEDMQEATVADTTIPDHKKADICRRIAEADRCLIDGCNEELQLLDLASVAARSCCS 208
            MT DAQ+ALRRTMETYS VTRFC ICNY++RIIEPLASRCAKFRF  LG+  M DR+ YI REE + +  + L  +  +SGGDMR+A+T +QSAS+ + G+ ++ E ++ ++G +P +V + L ++ +SG Y+K    V D ++ GY +S +L  + +  V    + D +KA IC R+AEAD+CLIDG +E LQLLD+AS   R+ C+
Sbjct:  126 MTEDAQNALRRTMETYSKVTRFCFICNYISRIIEPLASRCAKFRFKPLGREIMTDRIQYICREEGLSLDDEALNTLGKVSGGDMRRAITCLQSASRLF-GSRISSENIISVSGVVPDDVIEKLLTSCRSGDYDKAQGTVTDIIADGYAVSQILSQLHDEVVRAEDVTDEQKARICERVAEADKCLIDGGDEYLQLLDVASNTMRALCN 332          
BLAST of mRNA_Ecto-sp13_S_contig13993.3111.1 vs. uniprot
Match: A9NSN9_PICSI (AAA domain-containing protein n=2 Tax=Pinidae TaxID=3313 RepID=A9NSN9_PICSI)

HSP 1 Score: 199 bits (506), Expect = 1.120e-59
Identity = 103/208 (49.52%), Postives = 143/208 (68.75%), Query Frame = 0
Query:    1 MTPDAQSALRRTMETYSTVTRFCLICNYVTRIIEPLASRCAKFRFSALGQGAMLDRLSYISREEDVKITADGLQAIVDLSGGDMRKAVTAMQSASQFYAGAEVTPEVLVDIAGKIPAEVKDALWSAIKSGSYNKIVAAVDDFMSSGYPLSTLLEDMQEATVADTTIPDHKKADICRRIAEADRCLIDGCNEELQLLDLASVAARSCCS 208
            MT DAQ+ALRRTMETYS VTRFC ICNYV+RIIEPLASRCAKFRF  L +  M  R+ +I +EE V + +D L  +  +S GD+R+A+T +QSA++ Y G+ ++   L+ ++G +P EV  +L+ A K+G ++     V D ++ G+P S +   + +  V  T I D  KA I +R+AEAD+CLIDG +E LQLLD+AS A RS C+
Sbjct:  126 MTEDAQNALRRTMETYSKVTRFCFICNYVSRIIEPLASRCAKFRFKPLVEDIMTGRILHICKEEGVHLDSDALTMLSSISEGDLRRAITYLQSAARLY-GSSISSNNLISVSGIVPKEVVQSLYQACKTGQFDLAQKEVSDIIAEGHPASQIFSQLYDMVVQATDISDETKARISQRLAEADKCLIDGADEYLQLLDVASNAMRSLCN 332          
BLAST of mRNA_Ecto-sp13_S_contig13993.3111.1 vs. uniprot
Match: B7FK39_MEDTR (Putative DNA polymerase III, subunit gamma/ tau, P-loop containing nucleoside triphosphate hydrolase n=10 Tax=Fabaceae TaxID=3803 RepID=B7FK39_MEDTR)

HSP 1 Score: 198 bits (504), Expect = 2.240e-59
Identity = 99/208 (47.60%), Postives = 150/208 (72.12%), Query Frame = 0
Query:    1 MTPDAQSALRRTMETYSTVTRFCLICNYVTRIIEPLASRCAKFRFSALGQGAMLDRLSYISREEDVKITADGLQAIVDLSGGDMRKAVTAMQSASQFYAGAEVTPEVLVDIAGKIPAEVKDALWSAIKSGSYNKIVAAVDDFMSSGYPLSTLLEDMQEATVADTTIPDHKKADICRRIAEADRCLIDGCNEELQLLDLASVAARSCCS 208
            MT DAQ+ALRRTMETYS VTRF  ICNY++RIIEPLASRCAKFRF  L +  M  R+ YI +EE + + A+GL  + ++S GD+R+A+T +QSA++ + G+ ++ + L+ ++G +PAEV +AL  A +SG+++     V++F++ GYP+S +L  + EA V +  I D +KA I +++ EAD+CL+DG +E LQLLD+ S   ++ C+
Sbjct:  127 MTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLTEEIMSSRIVYICKEEGIYLDAEGLSTLSNISQGDLRRAITYLQSAARLF-GSSISSKDLISVSGIVPAEVVEALLKACRSGNFDLANKEVNNFIAEGYPVSQMLTQLFEAIVEENDISDEQKARISKKLGEADKCLVDGADEYLQLLDVVSNTIQALCN 333          
BLAST of mRNA_Ecto-sp13_S_contig13993.3111.1 vs. uniprot
Match: W1NMK0_AMBTC (AAA domain-containing protein (Fragment) n=3 Tax=Amborella trichopoda TaxID=13333 RepID=W1NMK0_AMBTC)

HSP 1 Score: 198 bits (503), Expect = 3.340e-59
Identity = 102/208 (49.04%), Postives = 146/208 (70.19%), Query Frame = 0
Query:    1 MTPDAQSALRRTMETYSTVTRFCLICNYVTRIIEPLASRCAKFRFSALGQGAMLDRLSYISREEDVKITADGLQAIVDLSGGDMRKAVTAMQSASQFYAGAEVTPEVLVDIAGKIPAEVKDALWSAIKSGSYNKIVAAVDDFMSSGYPLSTLLEDMQEATVADTTIPDHKKADICRRIAEADRCLIDGCNEELQLLDLASVAARSCCS 208
            MT DAQ+ALRRT+ETYS VTRFC ICNYV+RIIEPLASRCAKFRF  L +  M  R+S+I R+E + + ++ L  +  +S GD+R+A+T +QSA++ + G+ ++ + L+ ++G IP +V ++  SA +SGS+ K    V++  + GYP+S LL  + +  V  T I D +KA I  RIAEAD+ LIDG +E LQLLD+AS   R+ C+
Sbjct:  128 MTEDAQNALRRTLETYSKVTRFCFICNYVSRIIEPLASRCAKFRFKPLSEEIMSSRISHICRQESLNLDSEALATLSSISDGDLRRAITYLQSAARLF-GSSISAKNLISVSGVIPQDVVESFLSACRSGSFEKANKEVENITAEGYPVSQLLSQLFDMVVGTTDISDEQKARIFNRIAEADKYLIDGADEYLQLLDVASNTMRAICN 334          
BLAST of mRNA_Ecto-sp13_S_contig13993.3111.1 vs. uniprot
Match: A0A388K568_CHABU (AAA domain-containing protein n=1 Tax=Chara braunii TaxID=69332 RepID=A0A388K568_CHABU)

HSP 1 Score: 196 bits (499), Expect = 1.190e-58
Identity = 102/208 (49.04%), Postives = 144/208 (69.23%), Query Frame = 0
Query:    1 MTPDAQSALRRTMETYSTVTRFCLICNYVTRIIEPLASRCAKFRFSALGQGAMLDRLSYISREEDVKITADGLQAIVDLSGGDMRKAVTAMQSASQFYAGAEVTPEVLVDIAGKIPAEVKDALWSAIKSGSYNKIVAAVDDFMSSGYPLSTLLEDMQEATVADTTIPDHKKADICRRIAEADRCLIDGCNEELQLLDLASVAARSCCS 208
            MT DAQ+ALRRTMETY+ VTRFC ICNY++RIIEPLASRCAKFRF  L    M+ R+SYI  +E + +  + +  +  ++ GDMR+A+T++QSAS+ Y    +  ++L +++G +P EV   L +  KSG +++  AAV +  + GYP+S +L  MQ+  V    + D +KA IC RIAEAD+CLIDG +E LQLLD+AS   R+ C+
Sbjct:  123 MTEDAQNALRRTMETYTKVTRFCFICNYISRIIEPLASRCAKFRFKPLVSDIMVKRISYICDQEGLTLQPEAMDTLCRIADGDMRRAITSLQSASRRYGHCLMKKDIL-NVSGVVPDEVVADLLTTCKSGVFDRAQAAVTNVAAEGYPVSQILAQMQDRAVVAQDMTDEQKARICLRIAEADKCLIDGADEFLQLLDVASCTMRALCN 329          
BLAST of mRNA_Ecto-sp13_S_contig13993.3111.1 vs. uniprot
Match: A0A6P6US56_COFAR (replication factor C subunit 2 isoform X3 n=2 Tax=Coffea arabica TaxID=13443 RepID=A0A6P6US56_COFAR)

HSP 1 Score: 194 bits (492), Expect = 2.260e-58
Identity = 97/208 (46.63%), Postives = 146/208 (70.19%), Query Frame = 0
Query:    1 MTPDAQSALRRTMETYSTVTRFCLICNYVTRIIEPLASRCAKFRFSALGQGAMLDRLSYISREEDVKITADGLQAIVDLSGGDMRKAVTAMQSASQFYAGAEVTPEVLVDIAGKIPAEVKDALWSAIKSGSYNKIVAAVDDFMSSGYPLSTLLEDMQEATVADTTIPDHKKADICRRIAEADRCLIDGCNEELQLLDLASVAARSCCS 208
            MT DAQ+ALRRTMETYS VTRF  ICNY++RIIEPLASRCAKFRF  L +  M +R+ YI +EE + + +D L  +  +S GD+R+A+T +QSA++ + G+ ++   L+ ++G IP +V  AL+SA +SG+++     V + ++ GYP+S +L  + +  V    I D +KA IC+++ EAD+CL+DG +E LQLLD+AS   ++ C+
Sbjct:   59 MTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLTEDIMSNRILYICQEEGLSLDSDALATLSSISQGDLRRAITYLQSAARLF-GSSISSRDLISVSGVIPEDVVQALYSACRSGNFDLADKEVKNVIAEGYPVSQMLSQLFDLVVEADDISDEQKARICKKLGEADKCLVDGADEYLQLLDVASKTMQALCN 265          
BLAST of mRNA_Ecto-sp13_S_contig13993.3111.1 vs. uniprot
Match: A0A485KYI3_9STRA (Aste57867_13395 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485KYI3_9STRA)

HSP 1 Score: 195 bits (495), Expect = 3.720e-58
Identity = 102/205 (49.76%), Postives = 142/205 (69.27%), Query Frame = 0
Query:    1 MTPDAQSALRRTMETYSTVTRFCLICNYVTRIIEPLASRCAKFRFSALGQGAMLDRLSYISREEDVKITADGLQAIVDLSGGDMRKAVTAMQSASQFYAGAEVTPEVLVDIAGKIPAEVKDALWSAIKSGSYNKIVAAVDDFMSSGYPLSTLLEDMQEATVADTTIPDHKKADICRRIAEADRCLIDGCNEELQLLDLASVAARS 205
            MT DAQSALRR ME YS VTRFCLICNYV+RIIEP+ASRCAKFR+  L + +M  R+ ++S EE V I+ D +  ++++SGGD+RKA+  +QSA+Q   G E+T + ++ IAG  P E+ D LW  +   SY+K+   VDD + SG+P+ T+L  + +  V   ++   KKA +C RIAEAD+ L DG +E +QL+D+AS   RS
Sbjct:  122 MTNDAQSALRRMMENYSKVTRFCLICNYVSRIIEPVASRCAKFRYQPLEKLSMTARIHHVSAEEQVAISDDAVTTLLEVSGGDLRKAINYLQSANQLN-GDEITQDDILAIAGVAPKELFDKLWQHVAKNSYDKLKDEVDDIIYSGFPVLTILHQLTDEVVQHPSMNQFKKAKVCLRIAEADKKLGDGASEYMQLMDVASFLMRS 325          
BLAST of mRNA_Ecto-sp13_S_contig13993.3111.1 vs. uniprot
Match: UPI001B7DA897 (replication factor C subunit 2 isoform X4 n=1 Tax=Juglans microcarpa x Juglans regia TaxID=2249226 RepID=UPI001B7DA897)

HSP 1 Score: 193 bits (490), Expect = 4.650e-58
Identity = 97/208 (46.63%), Postives = 144/208 (69.23%), Query Frame = 0
Query:    1 MTPDAQSALRRTMETYSTVTRFCLICNYVTRIIEPLASRCAKFRFSALGQGAMLDRLSYISREEDVKITADGLQAIVDLSGGDMRKAVTAMQSASQFYAGAEVTPEVLVDIAGKIPAEVKDALWSAIKSGSYNKIVAAVDDFMSSGYPLSTLLEDMQEATVADTTIPDHKKADICRRIAEADRCLIDGCNEELQLLDLASVAARSCCS 208
            MT DAQ+ALRRTMETYS VTRF  ICNY++RIIEPLASRCAKFRF  L +  M  R+ +I +EE + + A+ L  +  +S GD+R+A+T +QSA++ + G+ ++ + L+ ++G IP E+  A     KSG+++     V+D ++ GYP+S +L  + E  V    + D +KA IC+++AEAD+CL+DG +E LQLLD+AS   R+ C+
Sbjct:   60 MTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEIMSSRILHICKEERLNLDAEALSTLSSISQGDLRRAITYLQSAARLF-GSSISSKDLISVSGVIPQEIVKAFLVTCKSGNFDVANKEVNDIIAEGYPVSQMLYQLLELVVEADDVSDEQKARICKKLAEADKCLVDGADEYLQLLDVASNTMRALCN 266          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig13993.3111.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JEB4_9PHAE3.650e-13999.04AAA domain-containing protein n=2 Tax=Ectocarpus T... [more]
A0A836CA10_9STRA1.760e-7057.28P-loop containing nucleoside triphosphate hydrolas... [more]
A0A1Y1HK96_KLENI5.010e-6450.00Replication factor C subunit RFC4 n=1 Tax=Klebsorm... [more]
A9NSN9_PICSI1.120e-5949.52AAA domain-containing protein n=2 Tax=Pinidae TaxI... [more]
B7FK39_MEDTR2.240e-5947.60Putative DNA polymerase III, subunit gamma/ tau, P... [more]
W1NMK0_AMBTC3.340e-5949.04AAA domain-containing protein (Fragment) n=3 Tax=A... [more]
A0A388K568_CHABU1.190e-5849.04AAA domain-containing protein n=1 Tax=Chara brauni... [more]
A0A6P6US56_COFAR2.260e-5846.63replication factor C subunit 2 isoform X3 n=2 Tax=... [more]
A0A485KYI3_9STRA3.720e-5849.76Aste57867_13395 protein n=1 Tax=Aphanomyces stella... [more]
UPI001B7DA8974.650e-5846.63replication factor C subunit 2 isoform X4 n=1 Tax=... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D1.10.8.60coord: 49..114
e-value: 2.3E-17
score: 64.0
NoneNo IPR availableGENE3D1.20.272.10coord: 115..203
e-value: 4.9E-23
score: 83.3
NoneNo IPR availableGENE3D3.40.50.300coord: 1..47
e-value: 7.5E-13
score: 50.8
NoneNo IPR availablePANTHERPTHR11669:SF20REPLICATION FACTOR C SUBUNIT 4coord: 1..204
NoneNo IPR availablePANTHERPTHR11669REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNITcoord: 1..204
IPR013748Replication factor C, C-terminalPFAMPF08542Rep_fac_Ccoord: 121..199
e-value: 2.0E-12
score: 47.3
IPR008921DNA polymerase III, clamp loader complex, gamma/delta/delta subunit, C-terminalSUPERFAMILY48019post-AAA+ oligomerization domain-likecoord: 116..200
IPR027417P-loop containing nucleoside triphosphate hydrolaseSUPERFAMILY52540P-loop containing nucleoside triphosphate hydrolasescoord: 1..98

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig13993contigEcto-sp13_S_contig13993:6..3302 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig13993.3111.1mRNA_Ecto-sp13_S_contig13993.3111.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig13993 3..3302 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig13993.3111.1 ID=prot_Ecto-sp13_S_contig13993.3111.1|Name=mRNA_Ecto-sp13_S_contig13993.3111.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=210bp
MTPDAQSALRRTMETYSTVTRFCLICNYVTRIIEPLASRCAKFRFSALGQ
GAMLDRLSYISREEDVKITADGLQAIVDLSGGDMRKAVTAMQSASQFYAG
AEVTPEVLVDIAGKIPAEVKDALWSAIKSGSYNKIVAAVDDFMSSGYPLS
TLLEDMQEATVADTTIPDHKKADICRRIAEADRCLIDGCNEELQLLDLAS
VAARSCCSQ*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013748Rep_factorC_C
IPR008921DNA_pol3_clamp-load_cplx_C
IPR027417P-loop_NTPase