mRNA_Ecto-sp13_S_contig13979.3100.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig13979.3100.1
Unique NamemRNA_Ecto-sp13_S_contig13979.3100.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig13979.3100.1 vs. uniprot
Match: D7FGX5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FGX5_ECTSI)

HSP 1 Score: 286 bits (732), Expect = 2.920e-93
Identity = 131/135 (97.04%), Postives = 133/135 (98.52%), Query Frame = 1 
Query:  253 LQIRSSPWTRREQEVTFHRNGTMSSNEGNKGEWWFDVGGLYWDVNTTIRAAPTVLHHKAELHWNVFGSQPRMFRGTITRDRLPNSPLPPWLFRPVVGSFIGSGVGDDTADTSYRHRQTGTSEQASPPPPRKTDRY 657
            LQIRSSPWTRREQEVTFHRNGTMSSN+GNKGEWWFDVGGLYWDVNTTIRAAPTVLHHKAELHWNVFGSQPRMFRGTITRDRLPNSPLPPWLFRPVVGSFIGSGVGDDTADTSYRHRQTGTSEQA  PPPR+TDRY
Sbjct:   74 LQIRSSPWTRREQEVTFHRNGTMSSNDGNKGEWWFDVGGLYWDVNTTIRAAPTVLHHKAELHWNVFGSQPRMFRGTITRDRLPNSPLPPWLFRPVVGSFIGSGVGDDTADTSYRHRQTGTSEQAGAPPPRRTDRY 208
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BLAST of mRNA_Ecto-sp13_S_contig13979.3100.1 vs. uniprot
Match: A0A835YRW5_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YRW5_9STRA)

HSP 1 Score: 150 bits (379), Expect = 3.590e-41
Identity = 62/109 (56.88%), Postives = 84/109 (77.06%), Query Frame = 1 
Query:  280 RREQEVTFHRNGTMSSNEGNKGEWWFDVGGLYWDVNTTIRAAPTVLHHKAELHWNVFGSQPRMFRGTITRDRLPNSPLPPWLFRPVVGSFIGSGVGDDTADTSYRHRQT 606
            R ++  TFH++GT+ S     G WWFDVGGL+W++      + T  H++AELHWN+FG+QPRMFRGT+TRDR P+S +PPWL RPV+ +F G G+GDDTADT+Y+HRQ+
Sbjct:   28 REDEYFTFHKDGTVESPGKADGRWWFDVGGLHWELK---EPSATATHYRAELHWNIFGTQPRMFRGTVTRDRSPSSFMPPWLLRPVISTFTGYGIGDDTADTTYKHRQS 133
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BLAST of mRNA_Ecto-sp13_S_contig13979.3100.1 vs. uniprot
Match: A0A0G4EMR7_VITBC (Uncharacterized protein n=2 Tax=Vitrella brassicaformis TaxID=1169539 RepID=A0A0G4EMR7_VITBC)

HSP 1 Score: 113 bits (282), Expect = 2.310e-26
Identity = 58/120 (48.33%), Postives = 79/120 (65.83%), Query Frame = 1 
Query:  253 LQIRSSPWTRR-EQEVTFHRNGTMSSNEGNKGEWWFDVGGLYWDV---NTTIRAAPTVLHHKAELHWNVFGSQPRMFRGTITRDRLPNSPLPPWLFRPVVGSFIGSGVGDDTADTSYRHR 600
            L++R   + RR E  + F R+G++ +++G+KGEW  D  G+ W+    NTT R       + AE+HWNVFGSQPRM++G ITRDR   +P+   LFRPV+G+F G G G DTAD SYR R
Sbjct:   70 LRVRRGLFRRRSEMRINFRRDGSLQTSDGHKGEWRLDKFGVMWEFLVDNTTHR-------YMAEVHWNVFGSQPRMYKGVITRDR--RAPIRADLFRPVIGTFTGIGCGTDTADVSYRDR 180
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BLAST of mRNA_Ecto-sp13_S_contig13979.3100.1 vs. uniprot
Match: A0A7S1BFC3_9STRA (Hypothetical protein n=2 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1BFC3_9STRA)

HSP 1 Score: 115 bits (289), Expect = 3.460e-26
Identity = 53/108 (49.07%), Postives = 74/108 (68.52%), Query Frame = 1 
Query:  301 FHRNGTMSSNEGN--KGEWWFDVGGLYWDVNTTI---RAAPTVLHHKAELHWNVFGSQPRMFRGTITRDRLPNSPLPPWLFRPVVGSFIGSGVGDDTADTSYRHRQTG 609
            F+R+G +S ++G+   GEWWFD GG+ WD++ T     A  T  H+ A++H N FG +PRM++G +TRDR  NS LPP LFRPV+ +F   GVG DT DT+Y++R  G
Sbjct:  168 FNRSGKVSMHDGSGVTGEWWFDQGGISWDMDITDVDNNAKKTTYHYHADIHMNKFGERPRMYKGVVTRDRYKNSFLPPSLFRPVIATFSAQGVGKDTRDTTYKNRLLG 275
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BLAST of mRNA_Ecto-sp13_S_contig13979.3100.1 vs. uniprot
Match: A0A7S2V1B7_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V1B7_9STRA)

HSP 1 Score: 86.7 bits (213), Expect = 3.090e-16
Identity = 43/105 (40.95%), Postives = 60/105 (57.14%), Query Frame = 1 
Query:  280 RREQEVTFHRNG------TMSSNEGNKGEWWFDVGGLYWDVNTTIRAAPTVLHHKAELHWNVFGSQPRMFRGTITRDRLPNSPLPPWLFRPVVGSFIGSGVGDDT 576
            R++  + F+  G       + ++EG  G+W  +  GL W     IR       + A +H N FG+ P+MFRG + RDR  +S LPPWLFRPVV +F G GVG+DT
Sbjct:   95 RKQSSIQFYHTGGEDDKGDLRTDEGETGDWAMEKLGLQWQ----IRRNGVAYTYYALVHHNTFGAAPKMFRGVVVRDRFASSFLPPWLFRPVVATFHGHGVGEDT 195
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BLAST of mRNA_Ecto-sp13_S_contig13979.3100.1 vs. uniprot
Match: A0A4D9CXA1_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CXA1_9STRA)

HSP 1 Score: 77.0 bits (188), Expect = 2.870e-13
Identity = 37/79 (46.84%), Postives = 49/79 (62.03%), Query Frame = 1 
Query:  340 KGEWWFDVGGLYWDVNTTIRAAPTVLHHKAELHWNVFGSQPRMFRGTITRDRLPNSPLPPWLFRPVVGSFIGSGVGDDT 576
            +G+W +D  GL W++           +H AEL W+ FG +P+M  G + R+R P SPLPPWL RPVVG+F G G G DT
Sbjct:   69 QGKWKYDKYGLNWELE---EGGLRYFYH-AELIWHSFGDRPKMHCGVVVRNRGPGSPLPPWLLRPVVGTFSGLGNGTDT 143
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig13979.3100.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
D7FGX5_ECTSI2.920e-9397.04Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A835YRW5_9STRA3.590e-4156.88Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A0G4EMR7_VITBC2.310e-2648.33Uncharacterized protein n=2 Tax=Vitrella brassicaf... [more]
A0A7S1BFC3_9STRA3.460e-2649.07Hypothetical protein n=2 Tax=Corethron hystrix Tax... [more]
A0A7S2V1B7_9STRA3.090e-1640.95Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A4D9CXA1_9STRA2.870e-1346.84Uncharacterized protein n=1 Tax=Nannochloropsis sa... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig13979contigEcto-sp13_S_contig13979:1097..2972 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score288.1
Seed ortholog evalue2.4e-75
Seed eggNOG ortholog2880.D7FGX5
Model size1094
Hectar predicted targeting categoryother localisation
Exons2
EggNOG OGs2ETV3@1,2SW48@2759
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-11_000990.1
Cds size468
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462745.864585-UTR-Ecto-sp13_S_contig13979:1096..12881681462745.864585-UTR-Ecto-sp13_S_contig13979:1096..1288Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig13979 1097..1288 +
1681462745.9023676-UTR-Ecto-sp13_S_contig13979:2538..29721681462745.9023676-UTR-Ecto-sp13_S_contig13979:2538..2972Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig13979 2539..2972 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462745.8829544-CDS-Ecto-sp13_S_contig13979:1288..14741681462745.8829544-CDS-Ecto-sp13_S_contig13979:1288..1474Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13979 1289..1474 +
1681462745.8945885-CDS-Ecto-sp13_S_contig13979:2256..25381681462745.8945885-CDS-Ecto-sp13_S_contig13979:2256..2538Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13979 2257..2538 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig13979.3100.1prot_Ecto-sp13_S_contig13979.3100.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig13979 1289..2538 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig13979.3100.1

>prot_Ecto-sp13_S_contig13979.3100.1 ID=prot_Ecto-sp13_S_contig13979.3100.1|Name=mRNA_Ecto-sp13_S_contig13979.3100.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=156bp
MIRTAGNRDAFMFSPSIVPNLQIRSSPWTRREQEVTFHRNGTMSSNEGNK
GEWWFDVGGLYWDVNTTIRAAPTVLHHKAELHWNVFGSQPRMFRGTITRD
RLPNSPLPPWLFRPVVGSFIGSGVGDDTADTSYRHRQTGTSEQASPPPPR
KTDRY*
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mRNA from alignment at Ecto-sp13_S_contig13979:1097..2972+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig13979.3100.1 ID=mRNA_Ecto-sp13_S_contig13979.3100.1|Name=mRNA_Ecto-sp13_S_contig13979.3100.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1876bp|location=Sequence derived from alignment at Ecto-sp13_S_contig13979:1097..2972+ (Ectocarpus species13 EcNAP12_S_4_19m)
CCCATGCGACGCGGGCGGTGCGAAGTCTGTGAGTTTTGTCCACGCCACCG
TCTTTCGTAGTTCCCTCTCTGCTTGCCGACATAACCTTTGTTTGTCACTC
CTACAAATTACCTGCTTAGCCTTTCGACTGTCATGTCCCTCTACGTTGCT
CCTACGTTTTCTTGAGTATTGAATGCTGCTGTCCTGCGTTGTATGATACG
AACCGCTGGTAATCGTGATGCTTTTATGTTTTCCCCGTCTATTGTTCCGA
ACTTGCAGATTCGTTCAAGCCCGTGGACCCGACGAGAGCAGGAGGTGACA
TTCCATCGCAATGGCACCATGTCGAGCAATGAAGGCAACAAGGGAGAATG
GTGGTTCGATGTCGGTGGACTCTATTGGGTACGTACAGTACAGATAGCAG
AGACAGTACATCCCAGAGATATACAGTCTTGTTTGTATTCGTATGCCATT
GCAATAGGCGATATGAGGGACTTCATGGCGAAACACCTAAAGACACCCAG
CGCGTGCCACTCGCACGCACACAGCAACAGCGGCTTGTACTCGTGGCCGT
CCATCGTATCCAGCAGACGCGCTGCGCCGTCTCTTGATTTGCGAACCGCC
TTCTGGACGGATACCATGTCGTGCAACACGCCGAGAGCCTTTATCAGGCG
GAATAATTGTACATCCCAAGAGAAACTCTCGTCCATAGCCGTCGTTTTTT
TTTAAGAAACTAGGTGAACGGGCCGAAGCCAGGGCAACATGAGAAAAGTT
GTGAAGGGGGTAAGCGGAGGCGATGTGTTCCGTGGGCAAAGATGTACTCC
CTTGATACCAGCCGGACGGAGAGTCGCAGATTCTTGATAACGCATGCCGT
CTAGGAGGCAATGAATTTTGCTCATTTTCTCCAAGCCCAGCAGTTGCGCG
GCGCCTGTCCGACCTCTTGTCTCCTATTATCTTGCAGGTAGTGCCTGACA
ATGTGGGTGTTGTTCCCGATGCGTGTGCGAATCGATGTCATCGATGCAAT
GAGATCGTGAAGGGACCGCATCGTACCTTCTCATGGTGTCATATTTGTTG
TTACGTGAATACTCACAACTTTCCATGTGCAAACTGGCACCATGCTTCAA
ACTGCACCTCCCTCTCCTCTCGTCGTTTGATCACTTTTGTATTTACGCCC
GCAACAACAGGACGTGAACACCACAATTCGAGCTGCTCCAACAGTGCTCC
ACCATAAGGCTGAGCTGCACTGGAATGTCTTTGGTTCGCAACCTCGAATG
TTCAGAGGCACCATCACCCGGGATCGCCTCCCCAATTCACCACTGCCACC
GTGGCTGTTTCGACCTGTTGTCGGCTCATTTATAGGATCAGGTGTCGGTG
ATGACACCGCCGACACGTCGTATAGGCACCGACAAACAGGAACGAGCGAG
CAAGCGAGTCCACCCCCCCCGAGAAAAACGGATCGCTACTAACGACTTCA
TGGCCAGCAATTGCTGGTTAGAGACTCTACCATGGTAGTCGGACACATTT
ATTTCCAGTAGGGTTCCCATGGTTTGCAGCGAGTGTGTCGAGTGAGGTGG
TCGTGTCTTTCTGGTCCATCGTTTTGTGTTACGGCTGAACGATGTGGTTG
GAAATGGGTAGACTGGACAGGACCACCTAGCCTGCGGACAGAACCACCAA
GTATTTTGATCGCAGAGAGCGCGGACGCCGATGCCGCTCATAAGATCCCG
CGCGGAATTGGGGTTTATGTACAGTGTCGGGGCTCTTACCCTGCAACATG
CACAATTGCGTCACCCCACCCAGTTTGAACTGAATGCCTAGACTACCGGA
CGGACACCCGTTTTGTAGGTGTGTTCGCTGTGGCGCACGCGGGAAAGTAG
GACACGACCCGTCGCCCCACGTGGTT
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig13979:1097..2972+

>mRNA_Ecto-sp13_S_contig13979.3100.1 ID=mRNA_Ecto-sp13_S_contig13979.3100.1|Name=mRNA_Ecto-sp13_S_contig13979.3100.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=468bp|location=Sequence derived from alignment at Ecto-sp13_S_contig13979:1097..2972+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGATACGAACCGCTGGTAATCGTGATGCTTTTATGTTTTCCCCGTCTAT
TGTTCCGAACTTGCAGATTCGTTCAAGCCCGTGGACCCGACGAGAGCAGG
AGGTGACATTCCATCGCAATGGCACCATGTCGAGCAATGAAGGCAACAAG
GGAGAATGGTGGTTCGATGTCGGTGGACTCTATTGGGACGTGAACACCAC
AATTCGAGCTGCTCCAACAGTGCTCCACCATAAGGCTGAGCTGCACTGGA
ATGTCTTTGGTTCGCAACCTCGAATGTTCAGAGGCACCATCACCCGGGAT
CGCCTCCCCAATTCACCACTGCCACCGTGGCTGTTTCGACCTGTTGTCGG
CTCATTTATAGGATCAGGTGTCGGTGATGACACCGCCGACACGTCGTATA
GGCACCGACAAACAGGAACGAGCGAGCAAGCGAGTCCACCCCCCCCGAGA
AAAACGGATCGCTACTAA
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