mRNA_Ecto-sp13_S_contig13940.3079.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig13940.3079.1 vs. uniprot
Match: D7FTL4_ECTSI (Similar to Retinol dehydrogenase 12 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTL4_ECTSI) HSP 1 Score: 409 bits (1050), Expect = 8.230e-141 Identity = 198/206 (96.12%), Postives = 202/206 (98.06%), Query Frame = 3
Query: 150 MAIPTEERTVDGLEKQIGVNHFGTHLLTRLMEKQIIDGGRVVFLSSVAHKHGGWDWDNVNYTKPDEYVPMIAYGRSKLANILDAKAFAGRLSDRRINTYALHPGVVNTDLFRNATDGRLISRVFRVVKSLGAFVLASPLTGSLTTLRCAIDPALAGPEFSGKYWSHMKQVKPSALASDPANPPRLWEITEELLETKLGKKIEELLK 767
MAIPTEERTVDGLEKQIGVNHFGTHLLTRLMEKQIIDGGRVVFLSSVAHKHGGWDWDNVNYTKP++YVPMIAYGRSKLAN+LDAKAFAG LSDRRINTYALHPGVVNTDLFRN TDGRLISRVFRV KSLGAFVLASPLTGSLTTLRCAIDPALAGPEFSGKYWSHMKQV+PSALASDPANPPRLWEITEELLETKLGKKIE LLK
Sbjct: 1 MAIPTEERTVDGLEKQIGVNHFGTHLLTRLMEKQIIDGGRVVFLSSVAHKHGGWDWDNVNYTKPNKYVPMIAYGRSKLANVLDAKAFAGHLSDRRINTYALHPGVVNTDLFRNVTDGRLISRVFRVAKSLGAFVLASPLTGSLTTLRCAIDPALAGPEFSGKYWSHMKQVQPSALASDPANPPRLWEITEELLETKLGKKIENLLK 206
BLAST of mRNA_Ecto-sp13_S_contig13940.3079.1 vs. uniprot
Match: D8LPM3_ECTSI (Short-chain dehydrogenase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LPM3_ECTSI) HSP 1 Score: 356 bits (913), Expect = 5.110e-118 Identity = 176/260 (67.69%), Postives = 208/260 (80.00%), Query Frame = 3
Query: 3 GVDLLEGLSDVDVQVEVLDLGVLKSVVSFAQRLKSSGQKIDVLINNAGIMAIPTEERTVDGLEKQIGVNHFGTHLLTRLMEKQIIDGGRVVFLSSVAHKHGGW------DWDNVNYTKPDEYVPMIAYGRSKLANILDAKAFAGRLSDRRINTYALHPGVVNTDLFRNATDGRLISRVFRVVKSLGAFVLASPLTGSLTTLRCAIDPALAGPEFSGKYWSHMKQVKPSALASDPANPPRLWEITEELLETKLGKKIEELL 764
GVDLLEGL+DVDV++EVLDLG L+SV++FAQR K+SG K+DVLINNAGIMAIP TVDGLE QIGVNHFG HLLTRLME + DGGRV+FLSS+ H+ D+DNVNY KPD Y +AYGRSKLANILDAK FA RL R I+TYA HPG+VNT+L RN TD L+SRV R+ L F+LA+PLTG+LTT+RCA+DP+LAGPEFSGKYW +MK+ PS LA DPANPPRLWE+TE +LE KLGK +++LL
Sbjct: 76 GVDLLEGLTDVDVRLEVLDLGSLQSVIAFAQRFKASGTKVDVLINNAGIMAIPERRETVDGLEMQIGVNHFGGHLLTRLMEPLMNDGGRVIFLSSLGHRQPPGQAKVTLDFDNVNYEKPDTYNSWMAYGRSKLANILDAKEFAKRLEARGISTYACHPGIVNTELMRNMTDSSLMSRVTRLTAPLSRFILATPLTGALTTIRCAVDPSLAGPEFSGKYWGNMKEETPSELALDPANPPRLWEVTESVLEAKLGKNVDDLL 335
BLAST of mRNA_Ecto-sp13_S_contig13940.3079.1 vs. uniprot
Match: A0A6H5JGN4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGN4_9PHAE) HSP 1 Score: 316 bits (810), Expect = 1.990e-104 Identity = 159/176 (90.34%), Postives = 169/176 (96.02%), Query Frame = 3
Query: 3 GVDLLEGLSDVDVQVEVLDLGVLKSVVSFAQRLKSSGQKIDVLINNAGIMAIPTEERTVDGLEKQIGVNHFGTHLLTRLMEKQIIDGGRVVFLSSVAHKHGGWDWDNVNYTKPDEYVPMIAYGRSKLANILDAKAFAGRLSDRRINTYALHPGVVNTDLFRNATDGRLISRVFRVV 530
GVDLLEGLSDVDVQVEVLDLGVL+SVVSFAQRLKSSGQKIDVLI+NAGIMAIPTE+R+VDGLEKQIGVNHF THLL+RLM KQIIDGGRVVF SSVAHKHGG DWDNVNYTKP+E+ PMIAYGRSKLAN+LDAK FAG LSDRRINTYALHPGVVNTDLFRNATDGRLISR+F+VV
Sbjct: 29 GVDLLEGLSDVDVQVEVLDLGVLQSVVSFAQRLKSSGQKIDVLIDNAGIMAIPTEKRSVDGLEKQIGVNHFVTHLLSRLMGKQIIDGGRVVFFSSVAHKHGGCDWDNVNYTKPNEHGPMIAYGRSKLANVLDAKGFAGHLSDRRINTYALHPGVVNTDLFRNATDGRLISRMFQVV 204
BLAST of mRNA_Ecto-sp13_S_contig13940.3079.1 vs. uniprot
Match: A0A6H5JP92_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JP92_9PHAE) HSP 1 Score: 310 bits (795), Expect = 3.570e-100 Identity = 154/260 (59.23%), Postives = 190/260 (73.08%), Query Frame = 3
Query: 3 GVDLLEGLSDVDVQVEVLDLGVLKSVVSFAQRLKSSGQKIDVLINNAGIMAIPTEERTVDGLEKQIGVNHFGTHLLTRLMEKQIIDGGRVVFLSSVAHKHGG------WDWDNVNYTKPDEYVPMIAYGRSKLANILDAKAFAGRLSDRRINTYALHPGVVNTDLFRNATDGRLISRVFRV-VKSLGAFVLASPLTGSLTTLRCAIDPALAGPEFSGKYWSHMKQVKPSALASDPANPPRLWEITEELLETKLGKKIEEL 761
GVDLL+GL++VDV++EVLDLG L+SV++FAQ K+SG K+DVL+NNAGI +P T DGLE IGVNHFG HLLTRLME I DGGRV+FLSS+ H WDWDN+N+ KP Y + AY RSKLANI DAK FA RL+ R INTYA+ PG+V T++ R G+LI + +LG L PL G+LTT+RCA+DP LAGPE SGKYW +MK+ PS LA DPANPPRLWEITE +LE KLGK+++++
Sbjct: 78 GVDLLDGLTEVDVRLEVLDLGSLRSVIAFAQGFKASGTKVDVLVNNAGIFGVPNRRETADGLEMHIGVNHFGGHLLTRLMEPSINDGGRVLFLSSLTHSRPPGMPKTTWDWDNMNFDKPKTYDRLSAYCRSKLANIWDAKEFAKRLAARSINTYAVQPGLVKTEIHRGIGGGKLIMPIVNAGYAALGWVWLKGPLDGALTTIRCAVDPCLAGPELSGKYWGNMKEETPSELALDPANPPRLWEITESVLEDKLGKRVDDV 337
BLAST of mRNA_Ecto-sp13_S_contig13940.3079.1 vs. uniprot
Match: D8LP30_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LP30_ECTSI) HSP 1 Score: 315 bits (807), Expect = 5.360e-100 Identity = 156/261 (59.77%), Postives = 195/261 (74.71%), Query Frame = 3
Query: 3 GVDLLEGLSDVDVQVEVLDLGVLKSVVSFAQRLKSSGQKIDVLINNAGIMAIPTEERTVDGLEKQIGVNHFGTHLLTRLMEKQIIDGGRVVFLSSVAHKHGG------WDWDNVNYTKPDEYVPMIAYGRSKLANILDAKAFAGRLSDRRINTYALHPGVVNTDLFRNATDGRLISRVFRV-VKSLGAFVLASPLTGSLTTLRCAIDPALAGPEFSGKYWSHMKQVKPSALASDPANPPRLWEITEELLETKLGKKIEELL 764
GVDLL+GL++VDV++EVLDLG L+SVV+FAQR K+SG K+DVL+NNAGI +P T DGLE QIGVNHFG HLLTRLME + DGGRV+FLSS+AH WDWDNVN+ KP Y + AY RSKLANI DAK FA RL+ R INTYA+ PG+V T++ R G+L+ + +LG L PL G+LTT+RCA+DP+LAGPE SGKYW +MK+ PS LA DPANPPRLWE+TE +LE KLGK++++++
Sbjct: 225 GVDLLDGLTEVDVRLEVLDLGSLQSVVAFAQRFKASGTKVDVLVNNAGIFGVPNRRETADGLEMQIGVNHFGGHLLTRLMEPSMNDGGRVLFLSSLAHSRPPGMPKTTWDWDNVNFDKPKTYDRLSAYCRSKLANIWDAKEFAKRLAARSINTYAVQPGLVKTEIHRGIGGGKLMMPIVNAGYVALGWVWLKGPLDGALTTVRCAVDPSLAGPELSGKYWGNMKEETPSELALDPANPPRLWEVTESVLEEKLGKRVDDVV 485
BLAST of mRNA_Ecto-sp13_S_contig13940.3079.1 vs. uniprot
Match: A0A433SZU2_ELYCH (Uncharacterized protein n=1 Tax=Elysia chlorotica TaxID=188477 RepID=A0A433SZU2_ELYCH) HSP 1 Score: 177 bits (448), Expect = 1.830e-48 Identity = 100/247 (40.49%), Postives = 145/247 (58.70%), Query Frame = 3
Query: 9 DLLEGLSDVDVQVEVLDLGVLKSVVSFAQRLKSSGQKIDVLINNAGIMAIPTEERTVDGLEKQIGVNHFGTHLLTRLMEKQI--IDGGRVVFLSSVAHKHGGWDWDNVNYTKPDEYVPMIAYGRSKLANILDAKAFAGRLSDRRINTYALHPGVVNTDLFRNATDGRLISRVFRVVKSLGAFVLASPLTGSLTTLRCAIDPALAGPEFSGKYWSHMKQVKPSALASDPANPPRLWEITEELLETKLG 743
+++E + DV V+ LDL +S+ +FA++ + ++D+LINNAG+MA P + T DGLE QIG NHFG LLT L+ ++ R+V LSS+AH WD++N K +Y AYG+SKLANIL + RL + ++HPG VNTDL R+ G +F+++K L +P+ G+ TTL CA+ P L E SGKY+ K+ PS A+ RLWE+TEE+++ KL
Sbjct: 56 EIVEETKNEDVVVQELDLASFESIQNFAKKFNETETRLDILINNAGVMACP-KTLTKDGLEMQIGTNHFGHFLLTNLLLDKLKACSPSRIVILSSMAHAFASIKWDDINSDK--KYGDWAAYGQSKLANILHCLELSNRLKGTGVTVNSVHPGGVNTDLQRHTNRG-----IFKLLKPLSKLFFKTPVDGAQTTLYCALSPDLE--EVSGKYFVDCKEKAPSRRGQSEADAKRLWELTEEIIQQKLS 292
BLAST of mRNA_Ecto-sp13_S_contig13940.3079.1 vs. uniprot
Match: A0A8K0JWE7_LADFU (Uncharacterized protein n=1 Tax=Ladona fulva TaxID=123851 RepID=A0A8K0JWE7_LADFU) HSP 1 Score: 165 bits (418), Expect = 5.710e-44 Identity = 106/238 (44.54%), Postives = 146/238 (61.34%), Query Frame = 3
Query: 39 VQVEVLDLGVLKSVVSFAQRLKSSGQKIDVLINNAG---IMAIPTEERTVDGLEKQIGVNHFGTHLLTRLMEKQIIDGG--RVVFLSSVAHKHGGWDWDNVNYTKPDEYVPMIAYGRSKLANILDAKAFAGRLSDRRINTYALHPGVVNTDLFRNATDGRLISRVFRVVKSLGAFVLASPLTGSLTTLRCAIDPALAGPEFSGKYWSHMKQVKPSALASDPANPPRLWEITEELLETK 737
V+V LDL L SV FAQ++ ++ +I++LINNAG IMA P + +T DG E Q+GVNH G LLT L+ +I R+V +SS+AHK G +++D++NY K Y +AY RSKLANIL K A RL + TYALHPGVV T+L R+ D L+ + + +++G V SP+ GS TT+ CA+D A +G Y+S + PSA A DPA RLWE + + +E K
Sbjct: 93 VEVYHLDLTSLDSVRQFAQKILATESEINLLINNAGEEGIMACP-QGKTKDGHELQLGVNHLGHFLLTCLLINRICASREPRIVNVSSMAHKWGDFNFDDINYEKTP-YSATMAYSRSKLANILFTKELAKRLQGTGVRTYALHPGVVATELGRHL-DSTLLPGMSWIFRNVGKVVAKSPVQGSQTTIYCAVDEKTANE--TGLYYSDCRVKTPSAKAKDPALASRLWEESLKWVELK 325
BLAST of mRNA_Ecto-sp13_S_contig13940.3079.1 vs. uniprot
Match: A0A6A4VL08_AMPAM (Retinol dehydrogenase 12 n=2 Tax=Amphibalanus amphitrite TaxID=1232801 RepID=A0A6A4VL08_AMPAM) HSP 1 Score: 161 bits (407), Expect = 3.600e-42 Identity = 102/246 (41.46%), Postives = 148/246 (60.16%), Query Frame = 3
Query: 54 LDLGVLKSVVSFAQRLKSSGQKIDVLINNAGIMAIPTEERTVDGLEKQIGVNHFGTHLLTRLMEKQIIDGG--RVVFLSSVAHKHGGWDWDNVNYTKPDEYVPMIAYGRSKLANILDAKAFAGRLSDRRINTYALHPGVVNTDLFRN-ATDGRLISRVFRVVKSLGAFVLASPLTGSLTTLRCAIDPALAGPEFSGKYWSHMKQVKPSALASDPANPPRLWEITEELLETKL-GKKIEELLK*SAS 779
LDL L+SV FAQ + + KI++LINNAG+MA P E T +G E Q+GVNH G LLT L+ +++++ R+V LSS+AH G +D++ + Y AY +SKLAN+L + A RL R+ TYA+HPG+V TDL+R+ RL+ +F+ +P G+ TTL CA+ P LA SG+Y+S K+ +PSA A + + RLWEI+EEL+ L G + +L + SA+
Sbjct: 78 LDLASLQSVRDFAQEVLAQADKINLLINNAGVMACPRAE-TKEGFEMQLGVNHLGHFLLTLLLLERLVNSAPSRIVNLSSLAHTRGKMHFDDLMLKRG--YGDWKAYYQSKLANVLFTRELARRLLGTRVTTYAVHPGIVRTDLWRHQGCFDRLLQPMFK-----------TPEQGAQTTLYCALAPELA--TLSGRYYSDCKEKQPSARARNDEDAARLWEISEELVGVGLQGNSVTQLRQGSAT 307
BLAST of mRNA_Ecto-sp13_S_contig13940.3079.1 vs. uniprot
Match: A0A553N7Y6_TIGCA (Uncharacterized protein n=1 Tax=Tigriopus californicus TaxID=6832 RepID=A0A553N7Y6_TIGCA) HSP 1 Score: 160 bits (405), Expect = 3.690e-42 Identity = 97/239 (40.59%), Postives = 143/239 (59.83%), Query Frame = 3
Query: 39 VQVEVLDLGVLKSVVSFAQRLKSSGQKIDVLINNAGIMAIPTEERTVDGLEKQIGVNHFGTHLLTR----LMEKQIIDG--GRVVFLSSVAHKHGGWDWDNVNYTKPDEYVPMIAYGRSKLANILDAKAFAGRLSDRRINTYALHPGVVNTDLFRNATDGRLISRVFRVVKSLGAFVLASPLTGSLTTLRCAIDPALAGPEFSGKYWSHMKQVKPSALASDPANPPRLWEITEELLETK 737
V+V LDL LKSV A+ L +S KID+LINNAG+M P +T DG + Q G NH G LLT L+ K G R++ LSS+AHK +WD++NY K Y + AY +SKLAN+L AK A RLSD I+ YA+HPG V+T+L R+ + + +++F K + + P+ G+ TTL CA+D ++A SGKY++ ++ +P + A + RLW+++E+ + K
Sbjct: 99 VEVRRLDLASLKSVRECAEALVASEDKIDILINNAGVMLCP-HWKTEDGFDMQFGTNHLGHFLLTEMLMPLIRKSEASGFHPRIIILSSLAHKGAPINWDDINYEK--SYSAIAAYAQSKLANVLHAKELAERLSDTEISVYAVHPGAVDTELGRHFYN-KWWAKLF---KPCASRLFKQPIHGAQTTLYCALDDSVAND--SGKYYADCRETRPHSRALRKEDQKRLWDLSEKFVGLK 328
BLAST of mRNA_Ecto-sp13_S_contig13940.3079.1 vs. uniprot
Match: A0A1B6KSJ8_9HEMI (Uncharacterized protein n=5 Tax=Cicadellinae TaxID=33370 RepID=A0A1B6KSJ8_9HEMI) HSP 1 Score: 159 bits (403), Expect = 5.230e-42 Identity = 100/232 (43.10%), Postives = 134/232 (57.76%), Query Frame = 3
Query: 36 DVQVEVLDLGVLKSVVSFAQRLKSSGQKIDVLINNAGIMAIPTEERTVDGLEKQIGVNHFGTHLLTRLMEKQIIDGG--RVVFLSSVAHKHGGWDWDNVNYTKPDEYVPMIAYGRSKLANILDAKAFAGRLSDRRINTYALHPGVVNTDLFRNATDGRLISRVFRVVKSLGAFVLASPLTGSLTTLRCAIDPALAGPEFSGKYWSHMKQVKPSALASDPANPPRLWEITEEL 725
+V V+ LDL L SV A+ L + + ID+LINNAG+M P T DG E Q G NH G L T L+ +II R++ LSSVAH G D+D++N+ K Y PM AYG+SKLAN+L +K A RL DR++ TYALHPGV+ T+L R+ D ++ +LG F + G+ TTL CA+D L +G Y+S +PSA+A D RLWE + L
Sbjct: 74 EVVVQKLDLSSLTSVRECAKILLETERHIDILINNAGVMMCPYAS-TEDGFEMQFGTNHLGHFLFTCLLLPRIISSAPSRIITLSSVAHARGQIDFDDLNWKKRS-YSPMAAYGQSKLANVLFSKELARRLGDRKVTTYALHPGVIRTELGRHM-DSVYFKGSRQLAATLGYFFYKTLDQGAQTTLHCALDQDLGSQ--TGLYYSDCITKEPSAVAKDEEVARRLWEESARL 300 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig13940.3079.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig13940.3079.1 >prot_Ecto-sp13_S_contig13940.3079.1 ID=prot_Ecto-sp13_S_contig13940.3079.1|Name=mRNA_Ecto-sp13_S_contig13940.3079.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=207bp MAIPTEERTVDGLEKQIGVNHFGTHLLTRLMEKQIIDGGRVVFLSSVAHKback to top mRNA from alignment at Ecto-sp13_S_contig13940:87..1324+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig13940.3079.1 ID=mRNA_Ecto-sp13_S_contig13940.3079.1|Name=mRNA_Ecto-sp13_S_contig13940.3079.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1238bp|location=Sequence derived from alignment at Ecto-sp13_S_contig13940:87..1324+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig13940:87..1324+ >mRNA_Ecto-sp13_S_contig13940.3079.1 ID=mRNA_Ecto-sp13_S_contig13940.3079.1|Name=mRNA_Ecto-sp13_S_contig13940.3079.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=621bp|location=Sequence derived from alignment at Ecto-sp13_S_contig13940:87..1324+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top |