mRNA_Ecto-sp13_S_contig1393.3069.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig1393.3069.1
Unique NamemRNA_Ecto-sp13_S_contig1393.3069.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig1393.3069.1 vs. uniprot
Match: A0A6H5KQV5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQV5_9PHAE)

HSP 1 Score: 76.3 bits (186), Expect = 6.720e-14
Identity = 38/43 (88.37%), Postives = 38/43 (88.37%), Query Frame = -2 
Query:  204 GVVNHPAEPCDDSGGESRFNDGAITAADSDDDISLLRSSLTLV 332
            GVVNHPAEPCDDS GESRFNDGA   ADS DDISLLRSSLTLV
Sbjct:  680 GVVNHPAEPCDDSEGESRFNDGATMTADSGDDISLLRSSLTLV 722
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1393.3069.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KQV5_9PHAE6.720e-1488.37Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig1393contigEcto-sp13_S_contig1393:3631..3964 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size336
Hectar predicted targeting categoryother localisation
Exons1
Cds size333
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462743.3794332-CDS-Ecto-sp13_S_contig1393:3630..39631681462743.3794332-CDS-Ecto-sp13_S_contig1393:3630..3963Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1393 3631..3963 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig1393.3069.1prot_Ecto-sp13_S_contig1393.3069.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig1393 3631..3963 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig1393.3069.1

>prot_Ecto-sp13_S_contig1393.3069.1 ID=prot_Ecto-sp13_S_contig1393.3069.1|Name=mRNA_Ecto-sp13_S_contig1393.3069.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=111bp
TLDCPWREGGGMSRRQHHRRRERDRSPASFELVSHIKIRKSICRAPSHGV
VGADDDAPPRPRACVRFYTRVNEERKSEMSSSLSAAVIAPSLNLLSPPLS
SQGSAGWLTTP
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mRNA from alignment at Ecto-sp13_S_contig1393:3631..3964+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig1393.3069.1 ID=mRNA_Ecto-sp13_S_contig1393.3069.1|Name=mRNA_Ecto-sp13_S_contig1393.3069.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=334bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1393:3631..3964+ (Ectocarpus species13 EcNAP12_S_4_19m)
ACGCTCGATTGCCCTTGGAGGGAGGGAGGAGGTATGTCTAGGCGGCAACA
TCACCGCAGGCGTGAAAGAGATCGAAGCCCAGCCTCTTTCGAATTGGTTT
CTCACATCAAAATACGCAAGTCAATTTGTCGTGCTCCGTCTCACGGCGTT
GTGGGCGCTGATGATGACGCCCCCCCGCGCCCGCGCGCTTGCGTCCGTTT
CTACACAAGGGTCAACGAGGAACGCAAGAGCGAGATGTCGTCGTCGCTGT
CTGCGGCCGTGATAGCGCCGTCGTTAAACCTGCTCTCGCCCCCGCTGTCG
TCGCAGGGCTCCGCTGGGTGGTTAACAACACCCT
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1393:3631..3964+

>mRNA_Ecto-sp13_S_contig1393.3069.1 ID=mRNA_Ecto-sp13_S_contig1393.3069.1|Name=mRNA_Ecto-sp13_S_contig1393.3069.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=333bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1393:3631..3964+ (Ectocarpus species13 EcNAP12_S_4_19m)
ACGCTCGATTGCCCTTGGAGGGAGGGAGGAGGTATGTCTAGGCGGCAACA
TCACCGCAGGCGTGAAAGAGATCGAAGCCCAGCCTCTTTCGAATTGGTTT
CTCACATCAAAATACGCAAGTCAATTTGTCGTGCTCCGTCTCACGGCGTT
GTGGGCGCTGATGATGACGCCCCCCCGCGCCCGCGCGCTTGCGTCCGTTT
CTACACAAGGGTCAACGAGGAACGCAAGAGCGAGATGTCGTCGTCGCTGT
CTGCGGCCGTGATAGCGCCGTCGTTAAACCTGCTCTCGCCCCCGCTGTCG
TCGCAGGGCTCCGCTGGGTGGTTAACAACACCC
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