mRNA_Ecto-sp13_S_contig1393.3068.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig1393.3068.1
Unique NamemRNA_Ecto-sp13_S_contig1393.3068.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1393.3068.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig1393contigEcto-sp13_S_contig1393:1374..1871 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size498
Hectar predicted targeting categoryother localisation
Exons1
Cds size357
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462743.341855-UTR-Ecto-sp13_S_contig1393:1373..15141681462743.341855-UTR-Ecto-sp13_S_contig1393:1373..1514Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig1393 1374..1514 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462743.3508055-CDS-Ecto-sp13_S_contig1393:1514..18711681462743.3508055-CDS-Ecto-sp13_S_contig1393:1514..1871Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1393 1515..1871 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig1393.3068.1prot_Ecto-sp13_S_contig1393.3068.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig1393 1515..1871 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig1393.3068.1

>prot_Ecto-sp13_S_contig1393.3068.1 ID=prot_Ecto-sp13_S_contig1393.3068.1|Name=mRNA_Ecto-sp13_S_contig1393.3068.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=119bp
MGNQRNHARTYQTPAQMIGACFHSAAGASQRYQHHRVVQERRARTPSPTN
HKQRSVVSQGYDALTAKKTPTTSLARTHEGTGLSNRSCDLSATLVSAIIT
TSVERGLAFAGRRVNDHTG
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mRNA from alignment at Ecto-sp13_S_contig1393:1374..1871+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig1393.3068.1 ID=mRNA_Ecto-sp13_S_contig1393.3068.1|Name=mRNA_Ecto-sp13_S_contig1393.3068.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=498bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1393:1374..1871+ (Ectocarpus species13 EcNAP12_S_4_19m)
AGCGACTGCATATCGTAAAACCAAACAATACCGGAGGCCAGGTTCTTCTC
CCCAAGTACCAAACTCTACAATCACACGAGATTCCTGCGGTAAGGCGCCG
CACACCGACATGCATACTTCGTTGAGTTCGTTCTCCGTCGCATGGGCAAC
CAAAGGAATCACGCCCGGACCTATCAGACCCCCGCCCAAATGATCGGCGC
TTGTTTCCATTCCGCGGCGGGGGCTTCGCAACGCTACCAGCATCATCGTG
TTGTACAAGAACGGCGCGCGCGAACACCATCGCCAACCAACCACAAGCAG
CGCTCCGTTGTCTCCCAAGGATACGACGCGCTCACTGCCAAAAAAACACC
AACTACTAGCCTTGCACGCACGCACGAAGGGACGGGCCTTTCGAATCGAT
CTTGCGATCTGTCCGCAACCCTCGTGTCCGCTATAATCACAACTTCTGTG
GAACGCGGGCTTGCATTCGCAGGTAGGCGCGTGAACGACCACACCGGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1393:1374..1871+

>mRNA_Ecto-sp13_S_contig1393.3068.1 ID=mRNA_Ecto-sp13_S_contig1393.3068.1|Name=mRNA_Ecto-sp13_S_contig1393.3068.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=357bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1393:1374..1871+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGGCAACCAAAGGAATCACGCCCGGACCTATCAGACCCCCGCCCAAAT
GATCGGCGCTTGTTTCCATTCCGCGGCGGGGGCTTCGCAACGCTACCAGC
ATCATCGTGTTGTACAAGAACGGCGCGCGCGAACACCATCGCCAACCAAC
CACAAGCAGCGCTCCGTTGTCTCCCAAGGATACGACGCGCTCACTGCCAA
AAAAACACCAACTACTAGCCTTGCACGCACGCACGAAGGGACGGGCCTTT
CGAATCGATCTTGCGATCTGTCCGCAACCCTCGTGTCCGCTATAATCACA
ACTTCTGTGGAACGCGGGCTTGCATTCGCAGGTAGGCGCGTGAACGACCA
CACCGGA
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