prot_Ecto-sp13_S_contig13926.3066.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig13926.3066.1
Unique Nameprot_Ecto-sp13_S_contig13926.3066.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length166
Homology
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BLAST of mRNA_Ecto-sp13_S_contig13926.3066.1 vs. uniprot
Match: A0A6H5KV10_9PHAE (Bromo domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KV10_9PHAE)

HSP 1 Score: 95.9 bits (237), Expect = 6.990e-20
Identity = 56/72 (77.78%), Postives = 57/72 (79.17%), Query Frame = 0 
Query:   73 EAKDAGSDQRQERRRQREETLAAQAFYAELLRLPGISSKKEARRMLKDAIPSMADVPSPPPXXXXXXXXKRG 144
            E KDAGSDQ       REETLAAQAFYAELLRLPG+SSKKEARRMLKDAIPSMADVPSPPP XX     K G
Sbjct: 1531 EPKDAGSDQXXXXXXXREETLAAQAFYAELLRLPGMSSKKEARRMLKDAIPSMADVPSPPPSXXSAALSKHG 1602
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig13926.3066.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KV10_9PHAE6.990e-2077.78Bromo domain-containing protein n=1 Tax=Ectocarpus... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig13926contigEcto-sp13_S_contig13926:591..1724 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig13926.3066.1mRNA_Ecto-sp13_S_contig13926.3066.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig13926 589..1724 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig13926.3066.1 ID=prot_Ecto-sp13_S_contig13926.3066.1|Name=mRNA_Ecto-sp13_S_contig13926.3066.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=166bp
LRDEGLGLQSKATKQPAAGGSSSRSGSPTSAATAAAGATGTIKLKLVIGG
GGTGGGGGPATGDGGSSNGRGDEAKDAGSDQRQERRRQREETLAAQAFYA
ELLRLPGISSKKEARRMLKDAIPSMADVPSPPPSPSSAALSKRGREQGPA
EGSAEGSAERDPADSA
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