mRNA_Ecto-sp13_S_contig13914.3057.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig13914.3057.1
Unique NamemRNA_Ecto-sp13_S_contig13914.3057.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig13914.3057.1 vs. uniprot
Match: D7FUQ6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUQ6_ECTSI)

HSP 1 Score: 152 bits (385), Expect = 1.820e-40
Identity = 84/91 (92.31%), Postives = 86/91 (94.51%), Query Frame = -2 
Query:    3 GRSRSIADETAGMSSAANDLAREVDELLRASGSGARGDSSGASGMVTGDASGPWRTRGSGRRLGTATAEGEGLEEKAEASSLGWGDLEGMA 275
            GRS SIADETAG+SSAANDLAREVDELLRASGSGARGDSSGASGM TGDASG WRTRG+GR LGTA AEGEGLEEKAEASSLGWGDLEGMA
Sbjct: 1652 GRSSSIADETAGLSSAANDLAREVDELLRASGSGARGDSSGASGMATGDASGLWRTRGTGRPLGTAMAEGEGLEEKAEASSLGWGDLEGMA 1742
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BLAST of mRNA_Ecto-sp13_S_contig13914.3057.1 vs. uniprot
Match: A0A6H5JRR9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRR9_9PHAE)

HSP 1 Score: 152 bits (384), Expect = 2.490e-40
Identity = 83/92 (90.22%), Postives = 86/92 (93.48%), Query Frame = -2 
Query:    3 AGRSRSIADETAGMSSAANDLAREVDELLRASGSGARGDSSGASGMVTGDASGPWRTRGSGRRLGTATAEGEGLEEKAEASSLGWGDLEGMA 278
            AGRSR+IADETAGMSSAANDLARE+DELLRASGSGARGDSSGASGMVTGD SG WRTRGSG RLGTA AEGEGLEE AE SS+GWGDLEGMA
Sbjct: 1794 AGRSRNIADETAGMSSAANDLAREIDELLRASGSGARGDSSGASGMVTGDVSGRWRTRGSGCRLGTAMAEGEGLEEMAEVSSVGWGDLEGMA 1885
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig13914.3057.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FUQ6_ECTSI1.820e-4092.31Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JRR9_9PHAE2.490e-4090.22Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig13914contigEcto-sp13_S_contig13914:3589..3966 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size380
Hectar predicted targeting categoryother localisation
Exons1
Cds size378
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462742.4075768-CDS-Ecto-sp13_S_contig13914:3588..39661681462742.4075768-CDS-Ecto-sp13_S_contig13914:3588..3966Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13914 3589..3966 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig13914.3057.1prot_Ecto-sp13_S_contig13914.3057.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig13914 3589..3966 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig13914.3057.1

>prot_Ecto-sp13_S_contig13914.3057.1 ID=prot_Ecto-sp13_S_contig13914.3057.1|Name=mRNA_Ecto-sp13_S_contig13914.3057.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=126bp
CAIPSRSPHPKELASAFSSNPSPSAVAVPNRRPLPRVLQGPEASPVTMPL
APLLSPRAPLPLARRSSSTSLARSLAALDIPAVSSAMLLLRPAAAPPAVA
PAPPPDEELTRRDDGPEVKKPPLLLP
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mRNA from alignment at Ecto-sp13_S_contig13914:3589..3966+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig13914.3057.1 ID=mRNA_Ecto-sp13_S_contig13914.3057.1|Name=mRNA_Ecto-sp13_S_contig13914.3057.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=378bp|location=Sequence derived from alignment at Ecto-sp13_S_contig13914:3589..3966+ (Ectocarpus species13 EcNAP12_S_4_19m)
TGCGCCATCCCCTCCAGGTCTCCCCACCCCAAAGAGCTGGCTTCTGCCTT
TTCCTCCAACCCTTCGCCTTCCGCCGTAGCGGTGCCCAACCGGCGGCCGC
TGCCGCGGGTTCTCCAAGGGCCGGAGGCGTCGCCCGTTACCATGCCGCTA
GCACCGCTGCTGTCTCCACGCGCCCCGCTACCGCTTGCCCGCAGGAGCTC
GTCGACCTCCCTGGCGAGGTCGTTGGCAGCGCTAGACATTCCGGCGGTCT
CGTCCGCGATGCTCCTGCTACGGCCGGCAGCAGCACCACCAGCGGTGGCC
CCGGCACCTCCTCCCGATGAAGAGCTCACGAGAAGAGACGACGGCCCGGA
GGTAAAAAAACCGCCGCTGCTGCTGCCG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig13914:3589..3966+

>mRNA_Ecto-sp13_S_contig13914.3057.1 ID=mRNA_Ecto-sp13_S_contig13914.3057.1|Name=mRNA_Ecto-sp13_S_contig13914.3057.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=378bp|location=Sequence derived from alignment at Ecto-sp13_S_contig13914:3589..3966+ (Ectocarpus species13 EcNAP12_S_4_19m)
TGCGCCATCCCCTCCAGGTCTCCCCACCCCAAAGAGCTGGCTTCTGCCTT
TTCCTCCAACCCTTCGCCTTCCGCCGTAGCGGTGCCCAACCGGCGGCCGC
TGCCGCGGGTTCTCCAAGGGCCGGAGGCGTCGCCCGTTACCATGCCGCTA
GCACCGCTGCTGTCTCCACGCGCCCCGCTACCGCTTGCCCGCAGGAGCTC
GTCGACCTCCCTGGCGAGGTCGTTGGCAGCGCTAGACATTCCGGCGGTCT
CGTCCGCGATGCTCCTGCTACGGCCGGCAGCAGCACCACCAGCGGTGGCC
CCGGCACCTCCTCCCGATGAAGAGCTCACGAGAAGAGACGACGGCCCGGA
GGTAAAAAAACCGCCGCTGCTGCTGCCG
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