mRNA_Ecto-sp13_S_contig13897.3043.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig13897.3043.1
Unique NamemRNA_Ecto-sp13_S_contig13897.3043.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig13897.3043.1 vs. uniprot
Match: D7G690_ECTSI (NOT2_3_5 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G690_ECTSI)

HSP 1 Score: 225 bits (573), Expect = 3.070e-69
Identity = 105/115 (91.30%), Postives = 108/115 (93.91%), Query Frame = 1 
Query:   10 QVLYASFASPWAEEPATPEPQFTLPSCYYLQPPPLKPMHLKNFQLETLFYIFYSMPQDVLQASSLFLAYAAQELHAREWRFQSVMKLWLKRVGPADGNVPPNVDYIYFDHNEWQR 354
            +VLYASFASPWAEEPATPEPQFTLPSCYYLQPPPLKPMHLKNFQLETLFYIFYSMPQDVLQA      YAAQELHAREWRFQSV+KLW KRVGPADGNVPPNV+YIYFDHNEWQR
Sbjct:  392 EVLYASFASPWAEEPATPEPQFTLPSCYYLQPPPLKPMHLKNFQLETLFYIFYSMPQDVLQA------YAAQELHAREWRFQSVLKLWFKRVGPADGNVPPNVEYIYFDHNEWQR 500
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BLAST of mRNA_Ecto-sp13_S_contig13897.3043.1 vs. uniprot
Match: A0A6U3ZWB8_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6U3ZWB8_9STRA)

HSP 1 Score: 152 bits (383), Expect = 1.410e-41
Identity = 72/116 (62.07%), Postives = 85/116 (73.28%), Query Frame = 1 
Query:   16 LYASFASPWAEEPATPEPQFTLPSCYYLQPPPLKPMHLKNFQLETLFYIFYSMPQDVLQASSLFLAYAAQELHAREWRFQSVMKLWLKRVGPADG---NVPPNVDYIYFDHNEWQR 354
            LY++FASPW+E P T EPQ+ LP CYY+QPP LK  HL  FQLETLFYIFY++P+DVLQA      YAAQEL++REWR+   +KLW KR GPADG   N    V YIYFD N W+R
Sbjct:  342 LYSTFASPWSESPTTREPQYQLPMCYYMQPPALKTGHLSKFQLETLFYIFYALPKDVLQA------YAAQELYSREWRYHVELKLWFKRAGPADGVANNAGSGVQYIYFDINSWER 451
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BLAST of mRNA_Ecto-sp13_S_contig13897.3043.1 vs. uniprot
Match: A0A836CGQ9_9STRA (NOT2_3_5 domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CGQ9_9STRA)

HSP 1 Score: 143 bits (361), Expect = 5.040e-41
Identity = 68/115 (59.13%), Postives = 82/115 (71.30%), Query Frame = 1 
Query:   10 QVLYASFASPWAEEPATPEPQFTLPSCYYLQPPPLKPMHLKNFQLETLFYIFYSMPQDVLQASSLFLAYAAQELHAREWRFQSVMKLWLKRVGPADGNVPPNVDYIYFDHNEWQR 354
            +VLYA+FA PWAE P++ EPQF LP CYY+QPP LK  H   F LETLFYIFY+MP D+LQA      YAAQEL+ R+WRF + +KLWLKR   AD      V +I+FDHN W+R
Sbjct:   59 EVLYATFAGPWAEGPSSGEPQFQLPQCYYMQPPSLKTTHFSKFTLETLFYIFYAMPSDILQA------YAAQELYLRDWRFHADLKLWLKRATAADSAA--QVRFIFFDHNVWER 165
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BLAST of mRNA_Ecto-sp13_S_contig13897.3043.1 vs. uniprot
Match: A0A7S2EBZ5_TRICV (Hypothetical protein n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S2EBZ5_TRICV)

HSP 1 Score: 144 bits (364), Expect = 4.120e-39
Identity = 69/116 (59.48%), Postives = 83/116 (71.55%), Query Frame = 1 
Query:   16 LYASFASPWAEEPATPEPQFTLPSCYYLQPPPLKPMHLKNFQLETLFYIFYSMPQDVLQASSLFLAYAAQELHAREWRFQSVMKLWLKRVGPADG---NVPPNVDYIYFDHNEWQR 354
            LY++FASPW+E P T EPQ+ LP CYY+QPP LK  HL  FQLETLFYIFY++P+DVLQA      YAAQEL++REWR+   +KLW KR GP+DG          YIYFD N W+R
Sbjct:  299 LYSTFASPWSESPTTREPQYQLPMCYYMQPPALKTGHLSKFQLETLFYIFYALPRDVLQA------YAAQELYSREWRYHVDLKLWFKRAGPSDGLTATANGGNQYIYFDVNTWER 408
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BLAST of mRNA_Ecto-sp13_S_contig13897.3043.1 vs. uniprot
Match: A0A7S0C8Q4_9STRA (Hypothetical protein n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0C8Q4_9STRA)

HSP 1 Score: 141 bits (356), Expect = 6.510e-39
Identity = 65/113 (57.52%), Postives = 80/113 (70.80%), Query Frame = 1 
Query:   16 LYASFASPWAEEPATPEPQFTLPSCYYLQPPPLKPMHLKNFQLETLFYIFYSMPQDVLQASSLFLAYAAQELHAREWRFQSVMKLWLKRVGPADGNVPPNVDYIYFDHNEWQR 354
            LY++FASPW++ P T EPQ+ LP CYY+QPP LK  HL  FQLETLFYIFY++P+DVLQA      YAAQEL++R+WR+   +KLW KR  P D        YIYFD N W+R
Sbjct:  186 LYSTFASPWSDSPTTREPQYQLPMCYYMQPPALKTGHLSKFQLETLFYIFYALPKDVLQA------YAAQELYSRDWRYHVDLKLWFKRASPVDVPNANGTQYIYFDINSWER 292
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BLAST of mRNA_Ecto-sp13_S_contig13897.3043.1 vs. uniprot
Match: A0A7R9W176_9STRA (Hypothetical protein n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9W176_9STRA)

HSP 1 Score: 142 bits (359), Expect = 2.010e-38
Identity = 68/116 (58.62%), Postives = 83/116 (71.55%), Query Frame = 1 
Query:   16 LYASFASPWAEEPATPEPQFTLPSCYYLQPPPLKPMHLKNFQLETLFYIFYSMPQDVLQASSLFLAYAAQELHAREWRFQSVMKLWLKRVGPADG---NVPPNVDYIYFDHNEWQR 354
            LY++FASPW+E P T EPQ+ LP CYY+QPP LK  HL  FQLETLFYIFY++P+DVLQA      YAAQEL++REWR+   +KLW KR G +DG        + YIYFD N W+R
Sbjct:  293 LYSTFASPWSESPTTREPQYQLPMCYYMQPPALKTGHLSKFQLETLFYIFYALPKDVLQA------YAAQELYSREWRYHVDLKLWFKRGGASDGLAATANGGIQYIYFDVNTWER 402
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BLAST of mRNA_Ecto-sp13_S_contig13897.3043.1 vs. uniprot
Match: A0A7S2YKN9_9STRA (Hypothetical protein n=1 Tax=Amphiprora paludosa TaxID=265537 RepID=A0A7S2YKN9_9STRA)

HSP 1 Score: 132 bits (332), Expect = 9.280e-37
Identity = 63/126 (50.00%), Postives = 85/126 (67.46%), Query Frame = 1 
Query:    1 GREQVLYASFASPWAEEPATP---EPQFTLPSCYYLQPPPLKPMHLKNFQLETLFYIFYSMPQDVLQASSLFLAYAAQELHAREWRFQSVMKLWLKRVGPADGNVPPNV-----DYIYFDHNEWQR 354
            G  + +Y++F+SPW+   +T    +P + LPSCYY+QPP LK  HL  FQLETLFYIFY++P+DVLQA      Y+AQEL++REWR+   +KLW KR GP+DG    +       Y+YFD N W+R
Sbjct:   42 GSAEHIYSTFSSPWSSTDSTQPTKDPHYQLPSCYYMQPPALKTGHLSKFQLETLFYIFYALPKDVLQA------YSAQELYSREWRYHGELKLWFKRAGPSDGLAASSAASAAGQYLYFDINTWER 161
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BLAST of mRNA_Ecto-sp13_S_contig13897.3043.1 vs. uniprot
Match: B7FQW3_PHATC (Predicted protein n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7FQW3_PHATC)

HSP 1 Score: 138 bits (348), Expect = 1.390e-36
Identity = 64/121 (52.89%), Postives = 85/121 (70.25%), Query Frame = 1 
Query:    1 GREQVLYASFASPWAEEPATPEPQFTLPSCYYLQPPPLKPMHLKNFQLETLFYIFYSMPQDVLQASSLFLAYAAQELHAREWRFQSVMKLWLKRVGPADG---NVPPNVDYIYFDHNEWQR 354
            G  + +Y++F+SPW++  AT EP + LP CYY+QPP LK  HL  FQLETLFYIFY++P+DVLQA      YAAQEL++REWR+   +KLW KR  P+DG   +   +  Y+YFD N W+R
Sbjct:  322 GSTEQIYSTFSSPWSDNVATKEPHYQLPVCYYMQPPALKTGHLSKFQLETLFYIFYALPKDVLQA------YAAQELYSREWRYHGELKLWFKRASPSDGVSSSSSGSPQYLYFDINSWER 436
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BLAST of mRNA_Ecto-sp13_S_contig13897.3043.1 vs. uniprot
Match: A0A7S2XLH6_9STRA (Hypothetical protein (Fragment) n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2XLH6_9STRA)

HSP 1 Score: 137 bits (345), Expect = 4.870e-36
Identity = 65/116 (56.03%), Postives = 81/116 (69.83%), Query Frame = 1 
Query:   16 LYASFASPWAEEPATPEPQFTLPSCYYLQPPPLKPMHLKNFQLETLFYIFYSMPQDVLQASSLFLAYAAQELHAREWRFQSVMKLWLKRVGPADG---NVPPNVDYIYFDHNEWQR 354
            LY++FA PW+E P T EPQ+ LP CYY+QPP LK  HL  F LETLFYIFY++P+DVLQA      YAAQEL++REWR+   +KLW KR GP DG   N      +++FD N W+R
Sbjct:  349 LYSTFAGPWSENPTTREPQYQLPMCYYMQPPALKTGHLSKFALETLFYIFYALPKDVLQA------YAAQELYSREWRYHVDLKLWFKRAGPNDGVGNNGGAGNQFLFFDINTWER 458
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BLAST of mRNA_Ecto-sp13_S_contig13897.3043.1 vs. uniprot
Match: A0A8J2SZ99_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SZ99_9STRA)

HSP 1 Score: 138 bits (347), Expect = 7.150e-36
Identity = 69/121 (57.02%), Postives = 82/121 (67.77%), Query Frame = 1 
Query:   10 QVLYASFASPWAEEPATPEPQFTLPSCYYLQPPPLKPM-------HLKNFQLETLFYIFYSMPQDVLQASSLFLAYAAQELHAREWRFQSVMKLWLKRVGPADGNVPPNVDYIYFDHNEWQ 351
            + LY++FASPWAE P T EPQF+LP CYY+QPPPLK         HL  FQLETLFYIFY+MP+DVLQA      YAAQEL+ REW++   +KLW KR   ADG    N  YI+FD   W+
Sbjct:  439 ECLYSTFASPWAEAPITREPQFSLPLCYYMQPPPLKTQYLSQNKSHLSKFQLETLFYIFYAMPKDVLQA------YAAQELYNREWQYHQDLKLWFKRSSSADGLNFSNNQYIFFDIKTWE 553
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig13897.3043.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G690_ECTSI3.070e-6991.30NOT2_3_5 domain-containing protein n=2 Tax=Ectocar... [more]
A0A6U3ZWB8_9STRA1.410e-4162.07Hypothetical protein n=1 Tax=Ditylum brightwellii ... [more]
A0A836CGQ9_9STRA5.040e-4159.13NOT2_3_5 domain-containing protein n=1 Tax=Tribone... [more]
A0A7S2EBZ5_TRICV4.120e-3959.48Hypothetical protein n=1 Tax=Trieres chinensis Tax... [more]
A0A7S0C8Q4_9STRA6.510e-3957.52Hypothetical protein n=1 Tax=Proboscia inermis Tax... [more]
A0A7R9W176_9STRA2.010e-3858.62Hypothetical protein n=1 Tax=Pseudictyota dubia Ta... [more]
A0A7S2YKN9_9STRA9.280e-3750.00Hypothetical protein n=1 Tax=Amphiprora paludosa T... [more]
B7FQW3_PHATC1.390e-3652.89Predicted protein n=2 Tax=Phaeodactylum tricornutu... [more]
A0A7S2XLH6_9STRA4.870e-3656.03Hypothetical protein (Fragment) n=1 Tax=Attheya se... [more]
A0A8J2SZ99_9STRA7.150e-3657.02Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig13897contigEcto-sp13_S_contig13897:677..1284 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score224.2
Seed ortholog evalue3.3e-56
Seed eggNOG ortholog2880.D7G690
Preferred nameCDC36
Model size354
KEGG koko:K12605
KEGG Pathwayko03018,map03018
Hectar predicted targeting categoryother localisation
GOsGO:0000288,GO:0000289,GO:0000290,GO:0000749,GO:0000932,GO:0000956,GO:0003674,GO:0003676,GO:0003723,GO:0003729,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0006139,GO:0006259,GO:0006351,GO:0006354,GO:0006355,GO:0006357,GO:0006366,GO:0006368,GO:0006401,GO:0006402,GO:0006417,GO:0006464,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009058,GO:0009059,GO:0009889,GO:0009890,GO:0009891,GO:0009892,GO:0009893,GO:0009987,GO:0010033,GO:0010467,GO:0010468,GO:0010556,GO:0010557,GO:0010558,GO:0010604,GO:0010605,GO:0010608,GO:0010628,GO:0010629,GO:0015074,GO:0016070,GO:0016071,GO:0016567,GO:0017148,GO:0018130,GO:0019219,GO:0019222,GO:0019236,GO:0019438,GO:0019439,GO:0019538,GO:0030014,GO:0030015,GO:0031086,GO:0031087,GO:0031136,GO:0031137,GO:0031139,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031327,GO:0031328,GO:0032268,GO:0032269,GO:0032446,GO:0032774,GO:0032784,GO:0032786,GO:0032968,GO:0032991,GO:0034243,GO:0034248,GO:0034249,GO:0034641,GO:0034645,GO:0034654,GO:0034655,GO:0035770,GO:0036211,GO:0036464,GO:0042221,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043412,GO:0043900,GO:0043902,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044260,GO:0044265,GO:0044267,GO:0044270,GO:0044271,GO:0044424,GO:0044444,GO:0044464,GO:0045893,GO:0045935,GO:0045944,GO:0046483,GO:0046700,GO:0046999,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0050789,GO:0050794,GO:0050896,GO:0051171,GO:0051172,GO:0051173,GO:0051246,GO:0051248,GO:0051252,GO:0051254,GO:0051716,GO:0051726,GO:0060255,GO:0065007,GO:0070647,GO:0070887,GO:0071310,GO:0071444,GO:0071704,GO:0080090,GO:0090304,GO:0090305,GO:0097159,GO:0097659,GO:1901360,GO:1901361,GO:1901362,GO:1901363,GO:1901564,GO:1901575,GO:1901576,GO:1902680,GO:1903506,GO:1903508,GO:1990904,GO:2000112,GO:2000113,GO:2000241,GO:2000243,GO:2001141
Exons2
EggNOG free text desc.nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay
EggNOG OGsCOG5601@1,KOG2151@2759
Cds size354
COG Functional cat.K
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03019
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462741.2930632-CDS-Ecto-sp13_S_contig13897:676..8861681462741.2930632-CDS-Ecto-sp13_S_contig13897:676..886Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13897 677..886 +
1681462741.3055315-CDS-Ecto-sp13_S_contig13897:1140..12841681462741.3055315-CDS-Ecto-sp13_S_contig13897:1140..1284Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13897 1141..1284 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig13897.3043.1prot_Ecto-sp13_S_contig13897.3043.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig13897 677..1284 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig13897.3043.1

>prot_Ecto-sp13_S_contig13897.3043.1 ID=prot_Ecto-sp13_S_contig13897.3043.1|Name=mRNA_Ecto-sp13_S_contig13897.3043.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=118bp
GREQVLYASFASPWAEEPATPEPQFTLPSCYYLQPPPLKPMHLKNFQLET
LFYIFYSMPQDVLQASSLFLAYAAQELHAREWRFQSVMKLWLKRVGPADG
NVPPNVDYIYFDHNEWQR
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mRNA from alignment at Ecto-sp13_S_contig13897:677..1284+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig13897.3043.1 ID=mRNA_Ecto-sp13_S_contig13897.3043.1|Name=mRNA_Ecto-sp13_S_contig13897.3043.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=608bp|location=Sequence derived from alignment at Ecto-sp13_S_contig13897:677..1284+ (Ectocarpus species13 EcNAP12_S_4_19m)
GGGCGCGAACAGGTGTTGTACGCGTCGTTCGCGAGTCCGTGGGCAGAGGA
GCCGGCGACACCAGAACCCCAGTTCACCCTTCCGTCGTGCTACTACCTAC
AGCCGCCGCCGTTGAAACCTATGCACTTGAAGAACTTCCAGCTCGAGACG
TTGTTCTACATCTTCTACTCTATGCCGCAGGACGTGTTGCAGGCGAGTTC
TCTCTTTCTAGTTCGTCGTCTTGGTTTTTTTTTCCGGTTTCGATTACTGC
TGAGGGGAAAGAAGCTAAGTGCTCTTGTGAGAGCGTCATACCAACACCGA
CACTCAGTTTCCAACCCCCCCCCGCCTCTTGCATGCTCGGTCCTCACGAG
GACGTGTGGCCAATGGCCCATAACCGCTAACGCGAGCAAAATATGATAAG
AGTACGCCCGCCCCCCCCCCGCTCTCGCCTCTGATATATTTTATATATAT
TTGCTATCCCACAGGCATACGCGGCGCAGGAGTTGCACGCCCGCGAATGG
CGGTTTCAATCCGTGATGAAGCTGTGGTTGAAGAGGGTCGGGCCCGCGGA
TGGGAACGTGCCCCCCAACGTGGATTACATCTACTTCGACCATAACGAGT
GGCAGCGC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig13897:677..1284+

>mRNA_Ecto-sp13_S_contig13897.3043.1 ID=mRNA_Ecto-sp13_S_contig13897.3043.1|Name=mRNA_Ecto-sp13_S_contig13897.3043.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=354bp|location=Sequence derived from alignment at Ecto-sp13_S_contig13897:677..1284+ (Ectocarpus species13 EcNAP12_S_4_19m)
GGGCGCGAACAGGTGTTGTACGCGTCGTTCGCGAGTCCGTGGGCAGAGGA
GCCGGCGACACCAGAACCCCAGTTCACCCTTCCGTCGTGCTACTACCTAC
AGCCGCCGCCGTTGAAACCTATGCACTTGAAGAACTTCCAGCTCGAGACG
TTGTTCTACATCTTCTACTCTATGCCGCAGGACGTGTTGCAGGCGAGTTC
TCTCTTTCTAGCATACGCGGCGCAGGAGTTGCACGCCCGCGAATGGCGGT
TTCAATCCGTGATGAAGCTGTGGTTGAAGAGGGTCGGGCCCGCGGATGGG
AACGTGCCCCCCAACGTGGATTACATCTACTTCGACCATAACGAGTGGCA
GCGC
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