mRNA_Ecto-sp13_S_contig13889.3040.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig13889.3040.1
Unique NamemRNA_Ecto-sp13_S_contig13889.3040.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig13889.3040.1 vs. uniprot
Match: D8LML3_ECTSI (Imidazole glycerol phosphate synthase hisHF n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LML3_ECTSI)

HSP 1 Score: 134 bits (337), Expect = 2.720e-35
Identity = 66/71 (92.96%), Postives = 68/71 (95.77%), Query Frame = 1 
Query:    1 KVIVFPGVGSFGSAMETLNGKGFTEALTEYIKQDRAFFGICLGMQTLFDGSEETPGLKGLGVIPGMVASFD 213
            +VIVFPGVGSFGSAMETLN KGFT  LTEYIKQDRAFFGICLGMQTLFDGS+ETPGLKGLGVIPGMVASFD
Sbjct:   59 QVIVFPGVGSFGSAMETLNDKGFTGPLTEYIKQDRAFFGICLGMQTLFDGSDETPGLKGLGVIPGMVASFD 129
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BLAST of mRNA_Ecto-sp13_S_contig13889.3040.1 vs. uniprot
Match: A0A7S1XZU5_9STRA (Imidazole glycerol phosphate synthase hisHF n=2 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XZU5_9STRA)

HSP 1 Score: 108 bits (270), Expect = 5.630e-26
Identity = 49/71 (69.01%), Postives = 60/71 (84.51%), Query Frame = 1 
Query:    1 KVIVFPGVGSFGSAMETLNGKGFTEALTEYIKQDRAFFGICLGMQTLFDGSEETPGLKGLGVIPGMVASFD 213
            +VIVFPGVG+FGSAME+L+  G+TE L EY++  R +FGICLGMQTLF+GSEE+PGL GLG+IPG V  FD
Sbjct:   72 RVIVFPGVGAFGSAMESLDSHGYTEPLKEYLRSGRPYFGICLGMQTLFEGSEESPGLSGLGIIPGQVTKFD 142
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BLAST of mRNA_Ecto-sp13_S_contig13889.3040.1 vs. uniprot
Match: A0A835ZC23_9STRA (Imidazole glycerol phosphate synthase hisHF n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZC23_9STRA)

HSP 1 Score: 103 bits (258), Expect = 2.350e-24
Identity = 48/71 (67.61%), Postives = 58/71 (81.69%), Query Frame = 1 
Query:    1 KVIVFPGVGSFGSAMETLNGKGFTEALTEYIKQDRAFFGICLGMQTLFDGSEETPGLKGLGVIPGMVASFD 213
            +VI+FPGVGSFG+AM+TL GKG+TE L  Y+  +R FFGICLGMQTLF+ SEE+P  KGLG+IPG V  FD
Sbjct:   45 EVIIFPGVGSFGNAMDTLEGKGYTEPLKAYLAANRPFFGICLGMQTLFESSEESPEHKGLGIIPGAVTQFD 115
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BLAST of mRNA_Ecto-sp13_S_contig13889.3040.1 vs. uniprot
Match: A0A5A8EEQ6_CAFRO (Imidazole glycerol phosphate synthase hisHF n=2 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8EEQ6_CAFRO)

HSP 1 Score: 102 bits (255), Expect = 6.200e-24
Identity = 47/70 (67.14%), Postives = 56/70 (80.00%), Query Frame = 1 
Query:    1 KVIVFPGVGSFGSAMETLNGKGFTEALTEYIKQDRAFFGICLGMQTLFDGSEETPGLKGLGVIPGMVASF 210
            KV+VFPGVG+FGSAMETL  +GF E L EY+  DR F GIC+GMQTLF+ SEE+PG+ GLGVIPG +  F
Sbjct:   52 KVLVFPGVGAFGSAMETLTARGFAEPLKEYLAADRPFLGICIGMQTLFEASEESPGVAGLGVIPGTITRF 121
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BLAST of mRNA_Ecto-sp13_S_contig13889.3040.1 vs. uniprot
Match: A0A5A8CIG5_CAFRO (Acetyl-CoA hydrolase n=4 Tax=Sar TaxID=2698737 RepID=A0A5A8CIG5_CAFRO)

HSP 1 Score: 102 bits (255), Expect = 6.840e-24
Identity = 47/70 (67.14%), Postives = 56/70 (80.00%), Query Frame = 1 
Query:    1 KVIVFPGVGSFGSAMETLNGKGFTEALTEYIKQDRAFFGICLGMQTLFDGSEETPGLKGLGVIPGMVASF 210
            KV+VFPGVG+FGSAMETL  +GF E L EY+  DR F GIC+GMQTLF+ SEE+PG+ GLGVIPG +  F
Sbjct:   52 KVLVFPGVGAFGSAMETLTARGFAEPLKEYLAADRPFLGICIGMQTLFEASEESPGVAGLGVIPGTITRF 121
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BLAST of mRNA_Ecto-sp13_S_contig13889.3040.1 vs. uniprot
Match: A0A7S1HV96_9EUGL (Imidazole glycerol phosphate synthase hisHF n=1 Tax=Eutreptiella gymnastica TaxID=73025 RepID=A0A7S1HV96_9EUGL)

HSP 1 Score: 101 bits (252), Expect = 1.480e-23
Identity = 45/71 (63.38%), Postives = 57/71 (80.28%), Query Frame = 1 
Query:    1 KVIVFPGVGSFGSAMETLNGKGFTEALTEYIKQDRAFFGICLGMQTLFDGSEETPGLKGLGVIPGMVASFD 213
            K ++FPGVG+FGS ME LN  GFTE L EYI+  + +FGICLG+QTLF+GS+E+PG  GLG+IPG+V  FD
Sbjct:   42 KKLIFPGVGAFGSCMERLNSLGFTEPLKEYIRSGKPYFGICLGLQTLFEGSDESPGTTGLGIIPGLVTLFD 112
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BLAST of mRNA_Ecto-sp13_S_contig13889.3040.1 vs. uniprot
Match: A0A7S0HSR2_9CRYP (Hypothetical protein (Fragment) n=1 Tax=Hanusia phi TaxID=3032 RepID=A0A7S0HSR2_9CRYP)

HSP 1 Score: 97.4 bits (241), Expect = 1.600e-23
Identity = 42/69 (60.87%), Postives = 56/69 (81.16%), Query Frame = 1 
Query:    4 VIVFPGVGSFGSAMETLNGKGFTEALTEYIKQDRAFFGICLGMQTLFDGSEETPGLKGLGVIPGMVASF 210
            +++FPGVGSFG  ++ L+ KGF E L  Y+K  RAF+GICLGMQ+LF+GSEETPG+ GLG++PG+V  F
Sbjct:   46 ILIFPGVGSFGVCIDNLHKKGFFEPLKAYLKSGRAFYGICLGMQSLFEGSEETPGVAGLGIVPGVVGKF 114
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BLAST of mRNA_Ecto-sp13_S_contig13889.3040.1 vs. uniprot
Match: A0A7S3X8S4_9SPIT (Hypothetical protein (Fragment) n=1 Tax=Strombidinopsis acuminata TaxID=141414 RepID=A0A7S3X8S4_9SPIT)

HSP 1 Score: 96.7 bits (239), Expect = 1.610e-23
Identity = 41/69 (59.42%), Postives = 57/69 (82.61%), Query Frame = 1 
Query:    7 IVFPGVGSFGSAMETLNGKGFTEALTEYIKQDRAFFGICLGMQTLFDGSEETPGLKGLGVIPGMVASFD 213
            +VFPGVG+FG+ ++ L  +G+ +AL +Y++ DR FFGICLGMQTLF+GSEE+PG +GLGV+PG V  F+
Sbjct:   30 LVFPGVGAFGACVDALKSRGYFDALKQYLQDDRPFFGICLGMQTLFEGSEESPGYEGLGVLPGKVTRFE 98
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BLAST of mRNA_Ecto-sp13_S_contig13889.3040.1 vs. uniprot
Match: A0A7S2WYD5_9CHLO (Hypothetical protein (Fragment) n=1 Tax=Chloropicon primus TaxID=1764295 RepID=A0A7S2WYD5_9CHLO)

HSP 1 Score: 99.0 bits (245), Expect = 3.200e-23
Identity = 45/69 (65.22%), Postives = 57/69 (82.61%), Query Frame = 1 
Query:    7 IVFPGVGSFGSAMETLNGKGFTEALTEYIKQDRAFFGICLGMQTLFDGSEETPGLKGLGVIPGMVASFD 213
            +VFPGVG+FGSAM  LN +G+ EAL EYIK DR FFGIC+GMQ L++GSEE+ G++GLGV+ G+V  FD
Sbjct:  101 LVFPGVGAFGSAMGELNRRGYVEALREYIKSDRPFFGICIGMQVLYEGSEESDGVEGLGVLKGVVKKFD 169
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BLAST of mRNA_Ecto-sp13_S_contig13889.3040.1 vs. uniprot
Match: A0A4D9DC80_9STRA (GATase domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9DC80_9STRA)

HSP 1 Score: 100 bits (249), Expect = 4.010e-23
Identity = 47/71 (66.20%), Postives = 56/71 (78.87%), Query Frame = 1 
Query:    1 KVIVFPGVGSFGSAMETLNGKGFTEALTEYIKQDRAFFGICLGMQTLFDGSEETPGLKGLGVIPGMVASFD 213
            +VIVFPGVGSFGSAME L  +GFT+ L +YI  DR +FGICLGMQTLF+ SEE PG+ GLG+I G +  FD
Sbjct:   67 EVIVFPGVGSFGSAMEVLETRGFTQPLRDYILADRPYFGICLGMQTLFEASEECPGVAGLGIIKGTIKGFD 137
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig13889.3040.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LML3_ECTSI2.720e-3592.96Imidazole glycerol phosphate synthase hisHF n=2 Ta... [more]
A0A7S1XZU5_9STRA5.630e-2669.01Imidazole glycerol phosphate synthase hisHF n=2 Ta... [more]
A0A835ZC23_9STRA2.350e-2467.61Imidazole glycerol phosphate synthase hisHF n=1 Ta... [more]
A0A5A8EEQ6_CAFRO6.200e-2467.14Imidazole glycerol phosphate synthase hisHF n=2 Ta... [more]
A0A5A8CIG5_CAFRO6.840e-2467.14Acetyl-CoA hydrolase n=4 Tax=Sar TaxID=2698737 Rep... [more]
A0A7S1HV96_9EUGL1.480e-2363.38Imidazole glycerol phosphate synthase hisHF n=1 Ta... [more]
A0A7S0HSR2_9CRYP1.600e-2360.87Hypothetical protein (Fragment) n=1 Tax=Hanusia ph... [more]
A0A7S3X8S4_9SPIT1.610e-2359.42Hypothetical protein (Fragment) n=1 Tax=Strombidin... [more]
A0A7S2WYD5_9CHLO3.200e-2365.22Hypothetical protein (Fragment) n=1 Tax=Chloropico... [more]
A0A4D9DC80_9STRA4.010e-2366.20GATase domain-containing protein n=1 Tax=Nannochlo... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig13889contigEcto-sp13_S_contig13889:3538..4387 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score135.2
Seed ortholog evalue1.2e-29
Seed eggNOG ortholog2880.D8LML3
Preferred nameHIS7
Model size213
KEGG rclassRC00010,RC00074,RC01190,RC01943
KEGG koko:K01493,ko:K01663
KEGG ReactionR01663,R04558
KEGG Pathwayko00240,ko00340,ko01100,ko01110,ko01230,map00240,map00340,map01100,map01110,map01230
KEGG ModuleM00026,M00429
Hectar predicted targeting categoryother localisation
GOsGO:0000105,GO:0000107,GO:0003674,GO:0003824,GO:0004359,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006082,GO:0006520,GO:0006547,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009507,GO:0009532,GO:0009536,GO:0009570,GO:0009987,GO:0016053,GO:0016740,GO:0016757,GO:0016763,GO:0016787,GO:0016810,GO:0016811,GO:0018130,GO:0019438,GO:0019752,GO:0034641,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464,GO:0046394,GO:0046483,GO:0052803,GO:0071704,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607
Exons2
EggNOG free text desc.imidazoleglycerol-phosphate synthase activity
EggNOG OGsCOG0107@1,KOG0623@2759
EC3.5.4.12
Cds size213
COG Functional cat.E
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko02044
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462741.1043103-CDS-Ecto-sp13_S_contig13889:3537..36721681462741.1043103-CDS-Ecto-sp13_S_contig13889:3537..3672Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13889 3538..3672 +
1681462741.1173775-CDS-Ecto-sp13_S_contig13889:4309..43871681462741.1173775-CDS-Ecto-sp13_S_contig13889:4309..4387Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13889 4310..4387 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig13889.3040.1prot_Ecto-sp13_S_contig13889.3040.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig13889 3538..4387 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig13889.3040.1

>prot_Ecto-sp13_S_contig13889.3040.1 ID=prot_Ecto-sp13_S_contig13889.3040.1|Name=mRNA_Ecto-sp13_S_contig13889.3040.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=71bp
KVIVFPGVGSFGSAMETLNGKGFTEALTEYIKQDRAFFGICLGMQTLFDG
SEETPGLKGLGVIPGMVASFD
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mRNA from alignment at Ecto-sp13_S_contig13889:3538..4387+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig13889.3040.1 ID=mRNA_Ecto-sp13_S_contig13889.3040.1|Name=mRNA_Ecto-sp13_S_contig13889.3040.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=850bp|location=Sequence derived from alignment at Ecto-sp13_S_contig13889:3538..4387+ (Ectocarpus species13 EcNAP12_S_4_19m)
AAGGTGATCGTGTTCCCCGGTGTGGGATCGTTCGGCAGCGCGATGGAAAC
CCTCAACGGCAAGGGCTTCACGGAGGCCCTGACGGAGTACATCAAGCAGG
ACCGGGCTTTCTTCGGCATCTGCCTGGGCATGCAGGTGCGATGCTGGTGC
TGGCCCACCAACTCGCCTTCTTTCTTTCTTGTTTTTGTGCGGATTGAATC
GATTGGTTTATGGAGCCTGTCGCAATTTCCGTCTGACTGCAAAGAACGGC
CTTTGGAAGCAAACTGTAGAGATGGTCCCCTCTTCCCCCCCTCCCCTTCT
AGTATTTCCAACCCCGGGTTTCGTGCTGTCTCGATCTTTGAAGTAGGTCA
TCGACTGAAAGCTGCCGGTTGTGTTTCACCATGACGATGCTGTGTATGAT
TTTGAACGGCCTTGTCGAAGAAGGTGGATCGTGTGTTGTCAACTCAATCG
TTGGCGTTCGCTTAGGGAGATGCTCTACACGACTGGTCCTCTCCTTGCCT
CCGGCGAGATGCTCACACCTGCATGCGACTGGAGCTGCGAGCTCGCTGTC
TTGCCAGCCCTCCACGCGTGCTGGTAACGGCTGTTGATGCCGAGTCTACT
CCTGGATGCTCGGACGTCCTTGTTTGTCGTTTACGTCTTGTTCTTGTTGT
TGTTGTTGTGGTGGTCATCAAGTCTCGTTTCGATGACAGCCGAAATAACG
TCCCTTTATGTCGTGGTTTGCTTTCTTTATCGGTTCATGTCGTCGTGCCT
TGTTATCGCTGTGGCCACCAAGACACTTTTCGATGGCAGCGAGGAGACCC
CCGGGCTGAAAGGGCTGGGCGTCATCCCGGGCATGGTCGCAAGCTTCGAC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig13889:3538..4387+

>mRNA_Ecto-sp13_S_contig13889.3040.1 ID=mRNA_Ecto-sp13_S_contig13889.3040.1|Name=mRNA_Ecto-sp13_S_contig13889.3040.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=213bp|location=Sequence derived from alignment at Ecto-sp13_S_contig13889:3538..4387+ (Ectocarpus species13 EcNAP12_S_4_19m)
AAGGTGATCGTGTTCCCCGGTGTGGGATCGTTCGGCAGCGCGATGGAAAC
CCTCAACGGCAAGGGCTTCACGGAGGCCCTGACGGAGTACATCAAGCAGG
ACCGGGCTTTCTTCGGCATCTGCCTGGGCATGCAGACACTTTTCGATGGC
AGCGAGGAGACCCCCGGGCTGAAAGGGCTGGGCGTCATCCCGGGCATGGT
CGCAAGCTTCGAC
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