mRNA_Ecto-sp13_S_contig1385.3011.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig1385.3011.1
Unique NamemRNA_Ecto-sp13_S_contig1385.3011.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig1385.3011.1 vs. uniprot
Match: D7G006_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G006_ECTSI)

HSP 1 Score: 63.2 bits (152), Expect = 4.310e-9
Identity = 27/31 (87.10%), Postives = 28/31 (90.32%), Query Frame = -1 
Query: 2552 NGVRRGCYDRWLLAVA*GLDAHSVMLGNKRE 2644
            NGVRRGCYDRWLLAV  GLDA SVMLG+KRE
Sbjct:   14 NGVRRGCYDRWLLAVVKGLDADSVMLGSKRE 44
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1385.3011.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G006_ECTSI4.310e-987.10Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig1385contigEcto-sp13_S_contig1385:14869..17512 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size2644
Hectar predicted targeting categoryother localisation
Exons1
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-22_003410.1
Cds size363
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462738.7743082-UTR-Ecto-sp13_S_contig1385:14868..154871681462738.7743082-UTR-Ecto-sp13_S_contig1385:14868..15487Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig1385 14869..15487 +
1681462738.798531-UTR-Ecto-sp13_S_contig1385:15850..175121681462738.798531-UTR-Ecto-sp13_S_contig1385:15850..17512Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig1385 15851..17512 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462738.7882967-CDS-Ecto-sp13_S_contig1385:15487..158501681462738.7882967-CDS-Ecto-sp13_S_contig1385:15487..15850Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1385 15488..15850 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig1385.3011.1prot_Ecto-sp13_S_contig1385.3011.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig1385 15488..15850 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig1385.3011.1

>prot_Ecto-sp13_S_contig1385.3011.1 ID=prot_Ecto-sp13_S_contig1385.3011.1|Name=mRNA_Ecto-sp13_S_contig1385.3011.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=121bp
MLHVKDNTRKTKTHRVRRSLPLVGKLPVDTSSSSKKRTIFLHQRKPDQVV
GHVAQDRAREDATRLREHHVGVGIASLLGACRPRAQHLFGRKHHSVVVWQ
SSTHSSCRSCANSQTRNMLN*
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mRNA from alignment at Ecto-sp13_S_contig1385:14869..17512+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig1385.3011.1 ID=mRNA_Ecto-sp13_S_contig1385.3011.1|Name=mRNA_Ecto-sp13_S_contig1385.3011.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2644bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1385:14869..17512+ (Ectocarpus species13 EcNAP12_S_4_19m)
GTTGAGGGAGGGAGGCGAGGATGGTTGTTATCGGGCAACATGCATGTATG
TAATCTGGGCGCCTGAGCTTACAGCACTATAACAACAACAGAAGTATCCA
GTACTCTCGAGGTTGCTTGGCGTCGAGTTCGTTCTGTACAATACGAGGGG
TGCAAAGTGATAGCAGCAGCAGCAGCAGCCGTATGGTGACAGGCAAGGAA
GGGCCGATCGCAACACAAAATGTGTGGTAGGCATCATGTGTATGTGTGCC
AAATACGACCGCTCACGACAGCAATAGGCATCATGCACTCACAAGTGCAC
CACAATTAAAGCTAGAAAGCTGTGTCGCGCGGATTATTATCACCCATGTT
GGTTGTGCGTGGGTGGTTTGTAATTACAGCGCCCACCGGACCGAGTGGTA
TGAAGTATATGCTAATGGTATCATTATATTGTTGTTGTTGTTACTTGCCC
GGAGCGTGAGACAAAAAGAGAATACATACTTGGCTAACGTTTAAAGCTGA
GTTGCAACCAAACGCACCTCTAAAACGCGCCTCCAACGCCCTCCTCTCTC
CTTAACCTAGCTGCCGTAGTTACTCTCACCAAACAACAGACAATATCATG
AAAGTATGTGCACGCTAAGATGTTGCATGTAAAAGATAATACCAGGAAAA
CAAAAACACACCGTGTCAGGCGCTCGTTGCCACTGGTTGGTAAGCTACCT
GTAGATACCTCGTCCTCGTCGAAGAAAAGAACAATCTTCCTGCACCAACG
CAAACCCGACCAAGTGGTAGGACACGTCGCTCAAGATCGGGCACGAGAAG
ATGCAACTAGGCTACGAGAACATCACGTCGGTGTGGGTATTGCATCACTC
TTGGGGGCATGTAGACCACGCGCACAACATCTATTCGGGCGAAAACACCA
CTCTGTTGTCGTCTGGCAGAGCAGCACTCACTCCTCCTGCAGAAGCTGCG
CTAATAGCCAGACGCGAAACATGCTGAATTGATGTGCACGCGCGCCCCTG
GCGTGCTTGCTGAACACCTAGTTTGGGTTGGAAGAACGACATTAAACAAC
CAGACAGAGAGACGAAACCCGCCGCCAAACATTCAGTCAGGTACATGGTA
AGCAAAGTATACTCTATCGGGGGCTAAACAATTCATAAGTAGCGCCTTAA
CGCAACGACTCCTCCTTTCCTGCAAGTAGACCGAACGACCACCGACGGGT
AGCGAAACAGAGAACGTCAGTCTGCGATCTTTGACTACATGCGGCGGCAA
AGGACCTGCGTTTATGCCGTCGAAAGTCGCCAGGAACAAACAAAAACATG
AACCGACAAAAGAAAGTCCGAAGAGTACCGGGAAAAAAAAGAGCTGCTAC
TGCTGGTTCGCACCTAAATTCGTCGCTGCCGTTATCACTAATATTCTAAA
ACATCTTGCCCGCCACACATACGCACATTGGTTGAAGTCAACACCTTTAC
CACGTATAATAGTGTTGACGGGTGCTCGCACACGGCAGACTAAACGTTTA
AGAAAAGACTTCTGTCGGGGCGCCCAGGACAAGCAAGGTAGAGACCAACT
CCTCCTCTCCCAGTCAGTCATGGGCAAGACACCAATCATTACCACTTGTC
GCGAGGAATCATAACACACGCTTGGCACGCACGGCTGGGCAGACGCGAGA
GGGGGGCGAGAGACACGCGCACACCCTACTCACGCAATCACCTAAACTCA
GGCTGGACATCCGTGGCCACGACCACCTCCCCCACGTGCTCACAACACCC
ATAACGCCAACCACGACAAGTCGACCGCGAGAGGGCGCATCAGTTCGGGA
TGATACCACACAATCCCCGCCGACACTTCTGTCTATCGAACCTCCTACCA
AGGGTCGCTCCATGTACCTCCTTGCCCTACCATTGCCGTATGTACCACCT
GTCTGCAGGCCCCCCGCCAGAAACGATTACACAGCAGCAGCGCATGTCAA
AATTGCTCATGGGCATCATGCCATATATGTGTCCACCGCAGCCAACCAAT
CCACCCTCGGATAATTCAGCAGGCTGTGTACTGTCAACACCTCAGATCGG
ATCAGAGACCAAACGAGCCTGATGGGCGATAAGCGAATGGTCTAAGCAAA
AACATCCACACGTATCACGACGCGACTAGTGTCCGTCTCTCAACCCTTTA
TCCAATAAATTTGCCCCGAAACCCACAAGCATCATCACTTTCCATCTGCC
CCTATCTTAGAACGACATCATCCGTTCTTGCCATGCGACGTAGGGGGTGT
AGCGCCTAGCAGGTCGGGTGCCAGCCACCCCCCACCCCTGACGGCATCCC
TCCGAGTGCGGCAGACACACTTGCAGCAGTGGCTGAAAAAAGCAGCCAGC
AATGACCTAAACCACCCGACCCGCTCTGGTCAACACCCCCGGGCACCAAT
AATTCTTTCCGGGAAGCGTTCCTTAGCGTGGTGGGCGAAATCAATCCCAA
ACCTCGCCTGCCGACTACATCGCGTCGCACGGTCGCGAGTATGAGTGGAA
ACGCCTGAACGGGAACCAAAGGGTTACGCACCTTCTCGTGTAGGTCCAGG
GCTCTCTTTTGTTTCCAAGCATGACGGAGTGAGCATCGAGACCTTAAGCT
ACCGCTAACAGCCATCGGTCATAGCACCCACGCCGAACCCCGTT
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1385:14869..17512+

>mRNA_Ecto-sp13_S_contig1385.3011.1 ID=mRNA_Ecto-sp13_S_contig1385.3011.1|Name=mRNA_Ecto-sp13_S_contig1385.3011.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=363bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1385:14869..17512+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTTGCATGTAAAAGATAATACCAGGAAAACAAAAACACACCGTGTCAG
GCGCTCGTTGCCACTGGTTGGTAAGCTACCTGTAGATACCTCGTCCTCGT
CGAAGAAAAGAACAATCTTCCTGCACCAACGCAAACCCGACCAAGTGGTA
GGACACGTCGCTCAAGATCGGGCACGAGAAGATGCAACTAGGCTACGAGA
ACATCACGTCGGTGTGGGTATTGCATCACTCTTGGGGGCATGTAGACCAC
GCGCACAACATCTATTCGGGCGAAAACACCACTCTGTTGTCGTCTGGCAG
AGCAGCACTCACTCCTCCTGCAGAAGCTGCGCTAATAGCCAGACGCGAAA
CATGCTGAATTGA
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