mRNA_Ecto-sp13_S_contig13776.2965.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig13776.2965.1
Unique NamemRNA_Ecto-sp13_S_contig13776.2965.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig13776.2965.1 vs. uniprot
Match: A0A6H5L369_9PHAE (Protein kinase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L369_9PHAE)

HSP 1 Score: 289 bits (739), Expect = 1.180e-87
Identity = 141/153 (92.16%), Postives = 143/153 (93.46%), Query Frame = 1 
Query:    1 FDKAHASPERIQAALDDVPCPAEIADDAWGLGTTIYWLLTGREDYVPGVRVHSTWGGHEVNSNYESPAPAHGNREQSPTREDGVPTCAGTVCSALPDLLSLDPGRRESALALAARHAQLVHTRTFGSPSSSPGGNPPFLTAAISPNKGTRSSP 459
            FDKAHASPERIQAALDDVPCPAEIADDAWGLGTTIYWLLTGREDYVPG RVHSTWGG EVNS YESPA AHGNR+QSPTREDGVPTC GTVCSALPDLLSLDP RRE+ALALAARHAQLVHTRTFGSPSSSPGGNPPFLTAA  PNKGT S P
Sbjct: 1040 FDKAHASPERIQAALDDVPCPAEIADDAWGLGTTIYWLLTGREDYVPGARVHSTWGGDEVNSGYESPASAHGNRKQSPTREDGVPTCTGTVCSALPDLLSLDPKRRETALALAARHAQLVHTRTFGSPSSSPGGNPPFLTAASLPNKGTGSCP 1192
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BLAST of mRNA_Ecto-sp13_S_contig13776.2965.1 vs. uniprot
Match: D8LDX9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDX9_ECTSI)

HSP 1 Score: 239 bits (610), Expect = 1.420e-73
Identity = 116/130 (89.23%), Postives = 122/130 (93.85%), Query Frame = 1 
Query:   70 IADDAWGLGTTIYWLLTGREDYVPGVRVHSTWGGHEVNSNYESPAPAHGNREQSPTREDGVPTCAGTVCSALPDLLSLDPGRRESALALAARHAQLVHTRTFGSPSSSPGGNPPFLTAAISPNKGTRSSP 459
            +ADDAWGLGTTIYWLLTGREDYVPG +V STWGG EV+ +YESPAPAHGNREQS TREDG PTCAGTVCSALPDLLSLDPGRRE+ALA+AARHAQLVHTRTFGSPSSSPGGNPPFLTAA SPNKGT SSP
Sbjct:    1 MADDAWGLGTTIYWLLTGREDYVPGAQVQSTWGGDEVDIDYESPAPAHGNREQSQTREDGAPTCAGTVCSALPDLLSLDPGRRETALAMAARHAQLVHTRTFGSPSSSPGGNPPFLTAASSPNKGTGSSP 130
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig13776.2965.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5L369_9PHAE1.180e-8792.16Protein kinase domain-containing protein n=1 Tax=E... [more]
D8LDX9_ECTSI1.420e-7389.23Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig13776contigEcto-sp13_S_contig13776:2008..2942 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size461
Hectar predicted targeting categoryother localisation
Exons2
Cds size459
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462735.3990166-CDS-Ecto-sp13_S_contig13776:2007..22201681462735.3990166-CDS-Ecto-sp13_S_contig13776:2007..2220Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13776 2008..2220 +
1681462735.4088235-CDS-Ecto-sp13_S_contig13776:2695..29411681462735.4088235-CDS-Ecto-sp13_S_contig13776:2695..2941Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13776 2696..2941 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig13776.2965.1prot_Ecto-sp13_S_contig13776.2965.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig13776 2008..2941 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig13776.2965.1

>prot_Ecto-sp13_S_contig13776.2965.1 ID=prot_Ecto-sp13_S_contig13776.2965.1|Name=mRNA_Ecto-sp13_S_contig13776.2965.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=153bp
FDKAHASPERIQAALDDVPCPAEIADDAWGLGTTIYWLLTGREDYVPGVR
VHSTWGGHEVNSNYESPAPAHGNREQSPTREDGVPTCAGTVCSALPDLLS
LDPGRRESALALAARHAQLVHTRTFGSPSSSPGGNPPFLTAAISPNKGTR
SSP
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mRNA from alignment at Ecto-sp13_S_contig13776:2008..2942+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig13776.2965.1 ID=mRNA_Ecto-sp13_S_contig13776.2965.1|Name=mRNA_Ecto-sp13_S_contig13776.2965.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=935bp|location=Sequence derived from alignment at Ecto-sp13_S_contig13776:2008..2942+ (Ectocarpus species13 EcNAP12_S_4_19m)
TTCGACAAGGCTCACGCCTCCCCAGAGCGGATCCAAGCGGCGCTTGACGA
CGTCCCGTGCCCCGCCGAGATAGCCGACGACGCGTGGGGTCTGGGCACCA
CCATCTATTGGTTGCTGACCGGGCGGGAGGACTACGTGCCGGGAGTCCGA
GTGCACAGCACGTGGGGTGGACACGAGGTCAACAGCAACTACGAGAGTCC
TGCTCCCGCCCATGTCAGTGCTCCCACCACTGGGAAGGGGGCGTCGTGGT
GTTGTCGAGGGGTAGGGGTGTAGACAATGGCGGTGCTGGCAGGGGTACGC
GGTGGTGATGGTTCACGGGACAACGGGGGGGGGAGGACCACAAAAAACAT
CGTGAAACGGATAGGCCGTCACTCCGTGGTGGAACGCAAAAACATCTCAC
GCGATGGCGGCGCGAGACTTCGGATCAGCCTTCCCCGTTTGTGTGTCCGT
GGAAGAAACAAACGACACAGTCAGAGAGATCCTCCCACAGCGCAGCCGCT
GAACCTACACCCTCAAAGCATGTGCTATACCAAAGCGAGCGGTGAAAGCG
TGTTGACGCCATCCCTACCTCCCGCCTGCGGTCACTATCGAGAGGCTTTT
GTCGTTGGCTACAAGCCAACCCGCCACCGACTCTCTTACTCCGTGTCCCC
TCGCTCGGCGATTCTCCCTCCGCCGCTTTTACTCACAGGGAAACCGCGAA
CAATCCCCAACAAGAGAGGACGGCGTACCAACTTGTGCCGGGACGGTGTG
CTCCGCCTTGCCGGACCTCCTCTCCCTGGACCCCGGGAGGCGAGAGAGTG
CGCTCGCTCTAGCAGCAAGGCATGCACAACTCGTCCACACCAGAACCTTC
GGGTCGCCGTCGTCGTCCCCCGGGGGTAACCCTCCCTTCCTTACCGCCGC
GATCTCACCCAACAAGGGTACGAGGTCATCCCCCC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig13776:2008..2942+

>mRNA_Ecto-sp13_S_contig13776.2965.1 ID=mRNA_Ecto-sp13_S_contig13776.2965.1|Name=mRNA_Ecto-sp13_S_contig13776.2965.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=459bp|location=Sequence derived from alignment at Ecto-sp13_S_contig13776:2008..2942+ (Ectocarpus species13 EcNAP12_S_4_19m)
TTCGACAAGGCTCACGCCTCCCCAGAGCGGATCCAAGCGGCGCTTGACGA
CGTCCCGTGCCCCGCCGAGATAGCCGACGACGCGTGGGGTCTGGGCACCA
CCATCTATTGGTTGCTGACCGGGCGGGAGGACTACGTGCCGGGAGTCCGA
GTGCACAGCACGTGGGGTGGACACGAGGTCAACAGCAACTACGAGAGTCC
TGCTCCCGCCCATGGAAACCGCGAACAATCCCCAACAAGAGAGGACGGCG
TACCAACTTGTGCCGGGACGGTGTGCTCCGCCTTGCCGGACCTCCTCTCC
CTGGACCCCGGGAGGCGAGAGAGTGCGCTCGCTCTAGCAGCAAGGCATGC
ACAACTCGTCCACACCAGAACCTTCGGGTCGCCGTCGTCGTCCCCCGGGG
GTAACCCTCCCTTCCTTACCGCCGCGATCTCACCCAACAAGGGTACGAGG
TCATCCCCC
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