mRNA_Ecto-sp13_S_contig10291.296.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig10291.296.1
Unique NamemRNA_Ecto-sp13_S_contig10291.296.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig10291.296.1 vs. uniprot
Match: A0A6H5LPB6_9PHAE (Na_H_Exchanger domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5LPB6_9PHAE)

HSP 1 Score: 230 bits (587), Expect = 6.700e-71
Identity = 119/119 (100.00%), Postives = 119/119 (100.00%), Query Frame = 1
Query:    1 IHMDPRILQIVFFPILIFVSAFNAQFHILERRLGQIIFLAGPGVILGAGLTAVFMKFVLPYDWDWNLSMVFGSMVAATDPVAVVALLEELGVSEKLGTLIEGESLLNDGSAIVVFEVFL 357
            IHMDPRILQIVFFPILIFVSAFNAQFHILERRLGQIIFLAGPGVILGAGLTAVFMKFVLPYDWDWNLSMVFGSMVAATDPVAVVALLEELGVSEKLGTLIEGESLLNDGSAIVVFEVFL
Sbjct:   94 IHMDPRILQIVFFPILIFVSAFNAQFHILERRLGQIIFLAGPGVILGAGLTAVFMKFVLPYDWDWNLSMVFGSMVAATDPVAVVALLEELGVSEKLGTLIEGESLLNDGSAIVVFEVFL 212          
BLAST of mRNA_Ecto-sp13_S_contig10291.296.1 vs. uniprot
Match: A0A835Z7P1_9STRA (Cation/H+ exchanger n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z7P1_9STRA)

HSP 1 Score: 140 bits (354), Expect = 1.290e-38
Identity = 70/119 (58.82%), Postives = 96/119 (80.67%), Query Frame = 1
Query:    1 IHMDPRILQIVFFPILIFVSAFNAQFHILERRLGQIIFLAGPGVILGAGLTAVFMKFVLPYDWDWNLSMVFGSMVAATDPVAVVALLEELGVSEKLGTLIEGESLLNDGSAIVVFEVFL 357
            I++DP  L  VF P+LIFVSA++   H+L+R++ QI++LA P V++G  LTA F+K+VL YDWDW   ++ G++V++TDPVA VALL+E GVS+KL TLIEGESL NDGSA+V+FE+FL
Sbjct:   77 INLDPTALFTVFLPVLIFVSAWSMHIHMLQRQIWQILWLAFPAVVVGTALTATFLKYVL-YDWDWLPCLLLGTIVSSTDPVATVALLKEQGVSDKLSTLIEGESLFNDGSALVLFELFL 194          
BLAST of mRNA_Ecto-sp13_S_contig10291.296.1 vs. uniprot
Match: A0A7S4DK55_9EUKA (Hypothetical protein n=1 Tax=Lotharella globosa TaxID=91324 RepID=A0A7S4DK55_9EUKA)

HSP 1 Score: 136 bits (342), Expect = 2.390e-37
Identity = 68/116 (58.62%), Postives = 89/116 (76.72%), Query Frame = 1
Query:    7 MDPRILQIVFFPILIFVSAFNAQFHILERRLGQIIFLAGPGVILGAGLTAVFMKFVLPYDWDWNLSMVFGSMVAATDPVAVVALLEELGVSEKLGTLIEGESLLNDGSAIVVFEVF 354
            +DP +L  +F P LIF SAF++ FHI++R LGQ + LAGPGV +   L AV   ++ PY+W W  ++VFGS+++ATDPVAVVALL ELGVS+KL TLIEGESL NDG+A V+F V+
Sbjct:  127 IDPHLLLGIFLPALIFESAFSSSFHIIKRELGQALLLAGPGVAISMILAAVVGVYIFPYNWSWWAALVFGSILSATDPVAVVALLRELGVSKKLATLIEGESLFNDGTAYVMFLVW 242          
BLAST of mRNA_Ecto-sp13_S_contig10291.296.1 vs. uniprot
Match: A0A7S2SQN5_9STRA (Hypothetical protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SQN5_9STRA)

HSP 1 Score: 138 bits (347), Expect = 3.660e-37
Identity = 64/117 (54.70%), Postives = 89/117 (76.07%), Query Frame = 1
Query:    7 MDPRILQIVFFPILIFVSAFNAQFHILERRLGQIIFLAGPGVILGAGLTAVFMKFVLPYDWDWNLSMVFGSMVAATDPVAVVALLEELGVSEKLGTLIEGESLLNDGSAIVVFEVFL 357
            + P ++   F PIL+F S+F+   HI+     Q++FLAGPGVI+   LTA+F+K+V  Y W W L ++FGSM++ATDPVAVVAL ++LGV+++LGTLIEGE L+NDGSAIV+F + L
Sbjct:  131 VSPEVILFAFIPILLFESSFSTDVHIIRHEALQVLFLAGPGVIVSTFLTALFVKYVFNYGWSWTLCLLFGSMMSATDPVAVVALFKDLGVNQRLGTLIEGEGLMNDGSAIVIFNICL 247          
BLAST of mRNA_Ecto-sp13_S_contig10291.296.1 vs. uniprot
Match: A0A6H5L0H9_9PHAE (Na_H_Exchanger domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0H9_9PHAE)

HSP 1 Score: 142 bits (359), Expect = 4.130e-37
Identity = 71/116 (61.21%), Postives = 86/116 (74.14%), Query Frame = 1
Query:    7 MDPRILQIVFFPILIFVSAFNAQFHILERRLGQIIFLAGPGVILGAGLTAVFMKFVLPYDWDWNLSMVFGSMVAATDPVAVVALLEELGVSEKLGTLIEGESLLNDGSAIVVFEVF 354
            MDP I+     PILIF SAF    HI  R + Q++ LAGPGV+    + AVF K+V PYDWDWN  + FG+M +ATDPVAVVAL++ELGVSE+L  LIEGESLLNDG++IVVF VF
Sbjct:  112 MDPEIIFYALLPILIFESAFFTDVHIFLREMWQVLVLAGPGVMAATIMMAVFSKYVFPYDWDWNTCLFFGAMTSATDPVAVVALMKELGVSERLAVLIEGESLLNDGTSIVVFSVF 227          
BLAST of mRNA_Ecto-sp13_S_contig10291.296.1 vs. uniprot
Match: UPI001C7B9F2A (Uncharacterized protein n=1 Tax=Carya illinoinensis TaxID=32201 RepID=UPI001C7B9F2A)

HSP 1 Score: 131 bits (330), Expect = 1.380e-36
Identity = 61/117 (52.14%), Postives = 89/117 (76.07%), Query Frame = 1
Query:    4 HMDPRILQIVFFPILIFVSAFNAQFHILERRLGQIIFLAGPGVILGAGLTAVFMKFVLPYDWDWNLSMVFGSMVAATDPVAVVALLEELGVSEKLGTLIEGESLLNDGSAIVVFEVF 354
            ++DP +L  VF P L+F S+F+ + H ++R L Q+IFLAGPGV++        +KF  PYDW W  S++ G +++ATDPVAVVALL++LG S+KL T+IEGES++NDG+AIVV+++F
Sbjct:   26 NIDPDLLLAVFLPALLFESSFSMEVHQIKRCLAQMIFLAGPGVLISTFCLGSALKFTFPYDWSWKTSLLLGGLLSATDPVAVVALLKDLGASKKLTTIIEGESMMNDGTAIVVYQLF 142          
BLAST of mRNA_Ecto-sp13_S_contig10291.296.1 vs. uniprot
Match: D7G372_ECTSI (Sodium/hydrogen exchanger family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G372_ECTSI)

HSP 1 Score: 141 bits (355), Expect = 1.580e-36
Identity = 70/116 (60.34%), Postives = 86/116 (74.14%), Query Frame = 1
Query:    7 MDPRILQIVFFPILIFVSAFNAQFHILERRLGQIIFLAGPGVILGAGLTAVFMKFVLPYDWDWNLSMVFGSMVAATDPVAVVALLEELGVSEKLGTLIEGESLLNDGSAIVVFEVF 354
            M+P I+     PILIF SAF    HI  R + Q++ LAGPGV+    + AVF K+V PYDWDWN  + FG+M +ATDPVAVVAL++ELGVSE+L  LIEGESLLNDG++IVVF VF
Sbjct:   45 MNPEIIFYALLPILIFESAFFTDVHIFLREMWQVLVLAGPGVLAATIMMAVFSKYVFPYDWDWNTCLFFGAMTSATDPVAVVALMKELGVSERLAVLIEGESLLNDGTSIVVFSVF 160          
BLAST of mRNA_Ecto-sp13_S_contig10291.296.1 vs. uniprot
Match: E3WCX4_EUTHA (Salt overly sensitive 1 short form n=2 Tax=Brassicaceae TaxID=3700 RepID=E3WCX4_EUTHA)

HSP 1 Score: 137 bits (346), Expect = 3.180e-36
Identity = 65/118 (55.08%), Postives = 90/118 (76.27%), Query Frame = 1
Query:    4 HMDPRILQIVFFPILIFVSAFNAQFHILERRLGQIIFLAGPGVILGAGLTAVFMKFVLPYDWDWNLSMVFGSMVAATDPVAVVALLEELGVSEKLGTLIEGESLLNDGSAIVVFEVFL 357
             ++P +L  VF P L+F SAF+ + H ++R LGQ++ LAGPGV++     A  +K   PYDWDW  S++ G +++ATDPVAVVALL+ELG S+KL T+IEGESL+NDG+AIVVF++FL
Sbjct:   89 EINPELLLAVFLPALLFESAFSMEVHQIKRCLGQMVLLAGPGVLISTFCLASLVKLTFPYDWDWKTSLLLGGLLSATDPVAVVALLKELGASKKLSTVIEGESLMNDGTAIVVFQLFL 206          
BLAST of mRNA_Ecto-sp13_S_contig10291.296.1 vs. uniprot
Match: A0A836CJL4_9STRA (Cation/H+ exchanger (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CJL4_9STRA)

HSP 1 Score: 131 bits (330), Expect = 7.490e-36
Identity = 65/115 (56.52%), Postives = 87/115 (75.65%), Query Frame = 1
Query:   13 PRILQIVFFPILIFVSAFNAQFHILERRLGQIIFLAGPGVILGAGLTAVFMKFVLPYDWDWNLSMVFGSMVAATDPVAVVALLEELGVSEKLGTLIEGESLLNDGSAIVVFEVFL 357
            P++L  VF PIL+FVSA+    H+L R++ Q+++LA P VI+ AGLTA F+K+ LPY W W L ++ GS+++ TDPVA VALL+ELGVSE L TL+E  SL NDGSA V+F +FL
Sbjct:    1 PQVLLTVFIPILVFVSAWTVHGHLLWRQIWQVLWLAFPAVIISAGLTAAFVKYALPYRWSWLLCLLLGSILSLTDPVATVALLKELGVSESLSTLVEAVSLFNDGSAFVLFLMFL 115          
BLAST of mRNA_Ecto-sp13_S_contig10291.296.1 vs. uniprot
Match: UPI001C7AB77F (Uncharacterized protein n=2 Tax=Carya illinoinensis TaxID=32201 RepID=UPI001C7AB77F)

HSP 1 Score: 131 bits (330), Expect = 7.680e-36
Identity = 61/117 (52.14%), Postives = 89/117 (76.07%), Query Frame = 1
Query:    4 HMDPRILQIVFFPILIFVSAFNAQFHILERRLGQIIFLAGPGVILGAGLTAVFMKFVLPYDWDWNLSMVFGSMVAATDPVAVVALLEELGVSEKLGTLIEGESLLNDGSAIVVFEVF 354
            ++DP +L  VF P L+F S+F+ + H ++R L Q+IFLAGPGV++        +KF  PYDW W  S++ G +++ATDPVAVVALL++LG S+KL T+IEGES++NDG+AIVV+++F
Sbjct:   89 NIDPDLLLAVFLPALLFESSFSMEVHQIKRCLAQMIFLAGPGVLISTFCLGSALKFTFPYDWSWKTSLLLGGLLSATDPVAVVALLKDLGASKKLTTIIEGESMMNDGTAIVVYQLF 205          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig10291.296.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5LPB6_9PHAE6.700e-71100.00Na_H_Exchanger domain-containing protein n=2 Tax=E... [more]
A0A835Z7P1_9STRA1.290e-3858.82Cation/H+ exchanger n=1 Tax=Tribonema minus TaxID=... [more]
A0A7S4DK55_9EUKA2.390e-3758.62Hypothetical protein n=1 Tax=Lotharella globosa Ta... [more]
A0A7S2SQN5_9STRA3.660e-3754.70Hypothetical protein (Fragment) n=1 Tax=Rhizochrom... [more]
A0A6H5L0H9_9PHAE4.130e-3761.21Na_H_Exchanger domain-containing protein n=1 Tax=E... [more]
UPI001C7B9F2A1.380e-3652.14Uncharacterized protein n=1 Tax=Carya illinoinensi... [more]
D7G372_ECTSI1.580e-3660.34Sodium/hydrogen exchanger family n=1 Tax=Ectocarpu... [more]
E3WCX4_EUTHA3.180e-3655.08Salt overly sensitive 1 short form n=2 Tax=Brassic... [more]
A0A836CJL4_9STRA7.490e-3656.52Cation/H+ exchanger (Fragment) n=1 Tax=Tribonema m... [more]
UPI001C7AB77F7.680e-3652.14Uncharacterized protein n=2 Tax=Carya illinoinensi... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig10291contigEcto-sp13_S_contig10291:956..2361 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score222.6
Seed ortholog evalue9.4e-56
Seed eggNOG ortholog2880.D7G6H4
Model size357
Hectar predicted targeting categorysignal peptide
Exons3
EggNOG free text desc.potassium:proton antiporter activity
EggNOG OGsCOG0025@1,KOG1965@2759
Cds size351
COG Functional cat.P
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462520.9802895-CDS-Ecto-sp13_S_contig10291:955..10421681462520.9802895-CDS-Ecto-sp13_S_contig10291:955..1042Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10291 956..1042 -
1681462520.9914083-CDS-Ecto-sp13_S_contig10291:1644..18091681462520.9914083-CDS-Ecto-sp13_S_contig10291:1644..1809Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10291 1645..1809 -
1681462521.0002851-CDS-Ecto-sp13_S_contig10291:2256..23551681462521.0002851-CDS-Ecto-sp13_S_contig10291:2256..2355Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10291 2257..2355 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462521.0123017-UTR-Ecto-sp13_S_contig10291:2355..23611681462521.0123017-UTR-Ecto-sp13_S_contig10291:2355..2361Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig10291 2356..2361 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig10291.296.1prot_Ecto-sp13_S_contig10291.296.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig10291 956..2355 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig10291.296.1

>prot_Ecto-sp13_S_contig10291.296.1 ID=prot_Ecto-sp13_S_contig10291.296.1|Name=mRNA_Ecto-sp13_S_contig10291.296.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=117bp
MDPRILQIVFFPILIFVSAFNAQFHILERRLGQIIFLAGPGVILGAGLTA
VFMKFVLPYDWDWNLSMVFGSMVAATDPVAVVALLEELGVSEKLGTLIEG
ESLLNDGSAIVVFEVFL
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mRNA from alignment at Ecto-sp13_S_contig10291:956..2361-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig10291.296.1 ID=mRNA_Ecto-sp13_S_contig10291.296.1|Name=mRNA_Ecto-sp13_S_contig10291.296.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1406bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10291:956..2361- (Ectocarpus species13 EcNAP12_S_4_19m)
ATTCATATGGACCCGCGGATCCTTCAGATTGTGTTTTTCCCTATCCTCAT CTTCGTCAGCGCGTTCAACGCGCAGTTCCACATCTTGGAGCGACGTCTTG GACAGGTGAGAAGCTTGTGTGATCAACCTTGCTGTACTGTTGCCAGACTC GTGGTCATGGGTATTGGGAGCTGAATAGGTCGTTACACGCCATATTCCGG CAGTGTGCTGGTCGGGGACTAGCGTGTGGAGGAGGTATGGTCACGTGGTA TGGGCTCCGACCGCTTTTTGGCATCATCAAACGCATGAGGAATACACTGT TGTTCGAACTTTTGTGTTTTGGGCTACTTGAGCTCCGCATGTGGTACGGA TAAATATTTTCAACTTGTTTCTGGATACGCATGTGCCAGTATTGTATCCC GAGATTTTCCCGGCGTTGAGTTATGTCCCCCCCCCCGTCCCTCCCTTCCT CTCTCCGTCCCTCCCTCTTCTCTCTCCCTCTCTCTCTCTCTCTCTCTCTC TCTCTCCCTCCCTCTACCTCTACCCCCCCCCCTCTCTCCTCACTGCCCGC AGATTATCTTTTTGGCGGGGCCTGGAGTTATCCTTGGAGCCGGCCTGACG GCCGTCTTCATGAAGTTCGTCCTCCCGTACGACTGGGACTGGAACCTGTC CATGGTCTTCGGGTCCATGGTAGCGGCCACCGATCCCGTCGCGGTTGTCG CCCTGCTCGAGGAGTTGGTAAGAAGCAGAGAGAAACCCATCGTGAAGAAA GGAGTTGCTTTGGTTGAACCTCCTACGGTAAGTCGTATGTACCGCAGGGT GCAGAACATCGTCCGCTGAACCAATTTTGAACCCTCGATTTGTCCGCGAC CTCGTCGTCGTGCTCGACGAGCTGGTGGGAAAACCGAAGAAAGCCCCGTC GTAAAGAAGTATTTGGTTTTGGTCACGCCTCCCGCCGAGAGCCGATTGTG CCGTGGCGTGCAGAATGTCTTCACTGAACCGAAGTTCACCTCTCTATGTG TCCACGACAAAGATGTTGCCGAAGCCAAGCGGTGCGTGTTCTGAAAGCTC TGGAGGAGACGGTCTCTATGCCGCCATTTTCGGCACCGCCGCTGCTCTTG CTGCATTGAGCTTTAGAACTCAATCGAGGGGGTACGGTATCTTGCGAAAG TAACGGTAGGAAGTTAGATCCAAGAGTTCTACAGTTACCTCGCTGATATG GCTGTGTGCGATAGAGTTGGTTATTGTTTTTGTGTCGAGAAGATCACCTT TGACTCTCTCTCTGGACACCGCTCATCCCACCCCCAACGTCGACCTTTGG ACACGTGATGAATGGGCAGGGCGTGAGTGAGAAGCTGGGCACTCTGATCG AGGGAGAGAGCCTGCTGAACGACGGGTCGGCCATCGTGGTGTTCGAGGTG TTCCTT
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig10291:956..2361-

>mRNA_Ecto-sp13_S_contig10291.296.1 ID=mRNA_Ecto-sp13_S_contig10291.296.1|Name=mRNA_Ecto-sp13_S_contig10291.296.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=351bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10291:956..2361- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGACCCGCGGATCCTTCAGATTGTGTTTTTCCCTATCCTCATCTTCGT
CAGCGCGTTCAACGCGCAGTTCCACATCTTGGAGCGACGTCTTGGACAGA
TTATCTTTTTGGCGGGGCCTGGAGTTATCCTTGGAGCCGGCCTGACGGCC
GTCTTCATGAAGTTCGTCCTCCCGTACGACTGGGACTGGAACCTGTCCAT
GGTCTTCGGGTCCATGGTAGCGGCCACCGATCCCGTCGCGGTTGTCGCCC
TGCTCGAGGAGTTGGGCGTGAGTGAGAAGCTGGGCACTCTGATCGAGGGA
GAGAGCCTGCTGAACGACGGGTCGGCCATCGTGGTGTTCGAGGTGTTCCT
T
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