mRNA_Ecto-sp13_S_contig13753.2950.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig13753.2950.1
Unique NamemRNA_Ecto-sp13_S_contig13753.2950.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig13753.2950.1 vs. uniprot
Match: D8LIH2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LIH2_ECTSI)

HSP 1 Score: 222 bits (565), Expect = 5.740e-67
Identity = 106/107 (99.07%), Postives = 107/107 (100.00%), Query Frame = 1 
Query:    1 QTLEMPADVLAVTFRPDGRQLCCACLNGTLQLWGTDGGDLQGIIEGRRDIAGGRRAHDMVTAANSNHGKYFTSVDYTADGTCVVAAGQSKFVCIYECSQQILVKKFQ 321
            +TLEMPADVLAVTFRPDGRQLCCACLNGTLQLWGTDGGDLQGIIEGRRDIAGGRRAHDMVTAANSNHGKYFTSVDYTADGTCVVAAGQSKFVCIYECSQQILVKKFQ
Sbjct:  563 ETLEMPADVLAVTFRPDGRQLCCACLNGTLQLWGTDGGDLQGIIEGRRDIAGGRRAHDMVTAANSNHGKYFTSVDYTADGTCVVAAGQSKFVCIYECSQQILVKKFQ 669
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BLAST of mRNA_Ecto-sp13_S_contig13753.2950.1 vs. uniprot
Match: A0A6H5LCN5_9PHAE (Utp12 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LCN5_9PHAE)

HSP 1 Score: 221 bits (564), Expect = 2.030e-65
Identity = 105/108 (97.22%), Postives = 108/108 (100.00%), Query Frame = 1 
Query:    1 QTLEMPADVLAVTFRPDGRQLCCACLNGTLQLWGTDGGDLQGIIEGRRDIAGGRRAHDMVTAANSNHGKYFTSVDYTADGTCVVAAGQSKFVCIYECSQQILVKKFQV 324
            +TLEMPADVLAVTFRPDGRQLCCACLNGTLQLWGTDGGDLQGIIEGR+DIAGGRRAHDMVTAANSNHGKYFTSVDYTADGTCVVAAGQSKFVCIYECSQQILVKKFQ+
Sbjct:  557 ETLEMPADVLAVTFRPDGRQLCCACLNGTLQLWGTDGGDLQGIIEGRQDIAGGRRAHDMVTAANSNHGKYFTSVDYTADGTCVVAAGQSKFVCIYECSQQILVKKFQI 664
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BLAST of mRNA_Ecto-sp13_S_contig13753.2950.1 vs. uniprot
Match: K3X6G0_GLOUD (Utp12 domain-containing protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3X6G0_GLOUD)

HSP 1 Score: 134 bits (336), Expect = 1.160e-34
Identity = 65/108 (60.19%), Postives = 82/108 (75.93%), Query Frame = 1 
Query:    1 QTLEMPADVLAVTFRPDGRQLCCACLNGTLQLWGTDGGDLQGIIEGRRDIAGGRRAHDMVTAANSNHGKYFTSVDYTADGTCVVAAGQSKFVCIYECSQQILVKKFQV 324
            + L    DVLAV FRPDG+Q+C A LNG L +W T  G+L   I+G RDIAGGRR  D +TA N+   K+FTSV Y+ADG+CV+A+G+SKF+CIYE SQQIL+KKFQ+
Sbjct:  190 EPLAHSTDVLAVAFRPDGKQVCSATLNGHLNVWDTKEGELVSTIDGMRDIAGGRRDADKITAKNNAISKHFTSVCYSADGSCVLASGRSKFICIYETSQQILLKKFQI 297
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BLAST of mRNA_Ecto-sp13_S_contig13753.2950.1 vs. uniprot
Match: A0A8K1CJB2_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CJB2_PYTOL)

HSP 1 Score: 134 bits (338), Expect = 1.920e-34
Identity = 65/108 (60.19%), Postives = 81/108 (75.00%), Query Frame = 1 
Query:    1 QTLEMPADVLAVTFRPDGRQLCCACLNGTLQLWGTDGGDLQGIIEGRRDIAGGRRAHDMVTAANSNHGKYFTSVDYTADGTCVVAAGQSKFVCIYECSQQILVKKFQV 324
            + L    DVLAV FRPDG+QLC A LNG L +W    G+L   I+G RDIAGGR++ D +TA N+   K+FTSV Y+ADGTCV+A G+SKF+CIYE SQQIL+KKFQ+
Sbjct:  523 EPLAHSTDVLAVAFRPDGKQLCSATLNGHLNIWEVKDGELLSTIDGMRDIAGGRKSTDKITAQNNTISKHFTSVCYSADGTCVLAGGRSKFICIYETSQQILLKKFQL 630
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BLAST of mRNA_Ecto-sp13_S_contig13753.2950.1 vs. uniprot
Match: A0A7S2WEL1_9STRA (Hypothetical protein n=1 Tax=labyrinthulid quahog parasite QPX TaxID=96639 RepID=A0A7S2WEL1_9STRA)

HSP 1 Score: 132 bits (332), Expect = 1.250e-33
Identity = 60/108 (55.56%), Postives = 83/108 (76.85%), Query Frame = 1 
Query:    1 QTLEMPADVLAVTFRPDGRQLCCACLNGTLQLWGTDGGDLQGIIEGRRDIAGGRRAHDMVTAANSNHGKYFTSVDYTADGTCVVAAGQSKFVCIYECSQQILVKKFQV 324
            +T+++ ++ L V FRPDGR+ C   LNG LQ W T+ G L+G IEG RDI+GGRR  D V+A N+ H K+F+SV YTADG+CV+A G+SK+VCIY+  Q+IL+KK+Q+
Sbjct:  543 ETMDIGSNGLCVAFRPDGREACVGTLNGQLQFWDTENGRLKGTIEGSRDISGGRRNADRVSAENATHNKHFSSVCYTADGSCVIAGGRSKYVCIYQIDQRILLKKYQL 650
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BLAST of mRNA_Ecto-sp13_S_contig13753.2950.1 vs. uniprot
Match: A0A5D6XQT4_9STRA (Utp12 domain-containing protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XQT4_9STRA)

HSP 1 Score: 130 bits (328), Expect = 4.300e-33
Identity = 65/108 (60.19%), Postives = 79/108 (73.15%), Query Frame = 1 
Query:    1 QTLEMPADVLAVTFRPDGRQLCCACLNGTLQLWGTDGGDLQGIIEGRRDIAGGRRAHDMVTAANSNHGKYFTSVDYTADGTCVVAAGQSKFVCIYECSQQILVKKFQV 324
            + L    DVLAV FRPDG+QLC A LNG L LW    G+L G I+G RDIAGGR   D ++A N+   K+FTSV Y+ADG CV+A G+SKFVCIYE SQQ+L+KKFQ+
Sbjct:  524 EPLAHSTDVLAVAFRPDGKQLCSATLNGALNLWDPKEGELVGTIDGLRDIAGGRGDGDKISARNNAMSKHFTSVCYSADGACVLAGGRSKFVCIYETSQQLLLKKFQL 631
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BLAST of mRNA_Ecto-sp13_S_contig13753.2950.1 vs. uniprot
Match: A0A024G4R8_9STRA (Utp12 domain-containing protein n=2 Tax=Albugo TaxID=65356 RepID=A0A024G4R8_9STRA)

HSP 1 Score: 129 bits (324), Expect = 1.490e-32
Identity = 61/108 (56.48%), Postives = 79/108 (73.15%), Query Frame = 1 
Query:    1 QTLEMPADVLAVTFRPDGRQLCCACLNGTLQLWGTDGGDLQGIIEGRRDIAGGRRAHDMVTAANSNHGKYFTSVDYTADGTCVVAAGQSKFVCIYECSQQILVKKFQV 324
            + L    DVLA+ FRPDG QLC A LNG L +W    GD    I+G RDIAGGR++ D +TA N++  K+FTS+ Y+ADG CV+A G+SK++CIYE SQQIL+KKFQ+
Sbjct:  524 EPLAHSTDVLAIAFRPDGSQLCSATLNGNLNIWDVADGDQVATIDGLRDIAGGRKSTDKITAKNNSISKHFTSLCYSADGRCVLAGGRSKYICIYETSQQILLKKFQI 631
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BLAST of mRNA_Ecto-sp13_S_contig13753.2950.1 vs. uniprot
Match: A0A7S2EJB0_TRICV (Hypothetical protein (Fragment) n=2 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S2EJB0_TRICV)

HSP 1 Score: 128 bits (321), Expect = 3.800e-32
Identity = 61/108 (56.48%), Postives = 80/108 (74.07%), Query Frame = 1 
Query:    1 QTLEMPADVLAVTFRPDGRQLCCACLNGTLQLWGTDGGDLQGIIEGRRDIAGGRRAHDMVTAANSNHGKYFTSVDYTADGTCVVAAGQSKFVCIYECSQQILVKKFQV 324
            ++LE  ADV+ V+FRPDG++LC   + G L  W  + G L   I+GRRDIAGGR+ +D  T+ N+   +YFTSV YTADGTCV+A G SK+VCIYE SQ+IL+KKFQ+
Sbjct:  563 ESLEHGADVVCVSFRPDGKELCAGTVRGLLCFWNVEDGTLMREIDGRRDIAGGRKDNDRQTSNNNAASRYFTSVCYTADGTCVLAGGNSKYVCIYEVSQKILLKKFQI 670
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BLAST of mRNA_Ecto-sp13_S_contig13753.2950.1 vs. uniprot
Match: A0A7S2DVH7_9STRA (Hypothetical protein (Fragment) n=2 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2DVH7_9STRA)

HSP 1 Score: 127 bits (320), Expect = 5.200e-32
Identity = 64/107 (59.81%), Postives = 80/107 (74.77%), Query Frame = 1 
Query:    4 TLEMPADVLAVTFRPDGRQLCCACLNGTLQLWGTDGGDLQGIIEGRRDIAGGRRAHDMVTAANSNHGKYFTSVDYTADGTCVVAAGQSKFVCIYECSQQILVKKFQV 324
            TL+  A+VL + FR DG+QL    L+G L LW T+     G+IEG +DIAGGR   D VTAANS+  K+F+SV ++ADGTCV+A G+SKFVCIYE SQQIL+KKFQV
Sbjct:  552 TLDHNAEVLCIDFRADGQQLVAGTLHGNLHLWNTEDATEIGVIEGTKDIAGGRGIEDRVTAANSSAKKHFSSVCFSADGTCVLAGGRSKFVCIYEASQQILLKKFQV 658
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BLAST of mRNA_Ecto-sp13_S_contig13753.2950.1 vs. uniprot
Match: B5Y4T9_PHATC (Predicted protein n=1 Tax=Phaeodactylum tricornutum (strain CCAP 1055/1) TaxID=556484 RepID=B5Y4T9_PHATC)

HSP 1 Score: 127 bits (319), Expect = 7.050e-32
Identity = 59/108 (54.63%), Postives = 80/108 (74.07%), Query Frame = 1 
Query:    1 QTLEMPADVLAVTFRPDGRQLCCACLNGTLQLWGTDGGDLQGIIEGRRDIAGGRRAHDMVTAANSNHGKYFTSVDYTADGTCVVAAGQSKFVCIYECSQQILVKKFQV 324
            ++L+  ADV+ VTFRPD R++C   + G L  W  D   L+  I+GRRDIAGGR+ +D +TA N+   +YFTSV Y+ADG+C++A G SK+VCIYE SQQ+L+KKFQV
Sbjct:  527 ESLQHTADVVCVTFRPDSREVCTGTMGGILSFWDVDSAKLKFEIDGRRDIAGGRKINDRMTADNNASSRYFTSVCYSADGSCILAGGNSKYVCIYEVSQQMLLKKFQV 634
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig13753.2950.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LIH2_ECTSI5.740e-6799.07Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5LCN5_9PHAE2.030e-6597.22Utp12 domain-containing protein n=1 Tax=Ectocarpus... [more]
K3X6G0_GLOUD1.160e-3460.19Utp12 domain-containing protein n=1 Tax=Globispora... [more]
A0A8K1CJB2_PYTOL1.920e-3460.19Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A7S2WEL1_9STRA1.250e-3355.56Hypothetical protein n=1 Tax=labyrinthulid quahog ... [more]
A0A5D6XQT4_9STRA4.300e-3360.19Utp12 domain-containing protein n=1 Tax=Pythium br... [more]
A0A024G4R8_9STRA1.490e-3256.48Utp12 domain-containing protein n=2 Tax=Albugo Tax... [more]
A0A7S2EJB0_TRICV3.800e-3256.48Hypothetical protein (Fragment) n=2 Tax=Trieres ch... [more]
A0A7S2DVH7_9STRA5.200e-3259.81Hypothetical protein (Fragment) n=2 Tax=Dictyocha ... [more]
B5Y4T9_PHATC7.050e-3254.63Predicted protein n=1 Tax=Phaeodactylum tricornutu... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig13753contigEcto-sp13_S_contig13753:3070..3951 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score216.1
Seed ortholog evalue7.8e-54
Seed eggNOG ortholog2880.D8LIH2
Preferred namePWP2
Model size324
KEGG koko:K08852,ko:K14558
KEGG Pathwayko03008,ko04140,ko04141,ko04210,ko04932,ko05010,map03008,map04140,map04141,map04210,map04932,map05010
Hectar predicted targeting categoryother localisation
GOsGO:0000028,GO:0000151,GO:0000447,GO:0000460,GO:0000462,GO:0000466,GO:0000469,GO:0000472,GO:0000478,GO:0000479,GO:0000480,GO:0000920,GO:0000966,GO:0000967,GO:0003674,GO:0003676,GO:0003723,GO:0003729,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005730,GO:0005732,GO:0005737,GO:0005829,GO:0006139,GO:0006364,GO:0006396,GO:0006725,GO:0006807,GO:0006996,GO:0007163,GO:0007275,GO:0008150,GO:0008152,GO:0009553,GO:0009743,GO:0009744,GO:0009987,GO:0010033,GO:0010119,GO:0010467,GO:0016043,GO:0016070,GO:0016072,GO:0022607,GO:0022613,GO:0022618,GO:0030010,GO:0030490,GO:0030515,GO:0030684,GO:0030686,GO:0031461,GO:0031974,GO:0031981,GO:0032040,GO:0032501,GO:0032502,GO:0032991,GO:0034285,GO:0034388,GO:0034470,GO:0034471,GO:0034622,GO:0034641,GO:0034660,GO:0042221,GO:0042254,GO:0042255,GO:0042274,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044452,GO:0044464,GO:0046483,GO:0048229,GO:0048856,GO:0050789,GO:0050794,GO:0050896,GO:0051301,GO:0065003,GO:0065007,GO:0070013,GO:0070925,GO:0071704,GO:0071826,GO:0071840,GO:0080008,GO:0090304,GO:0090305,GO:0090501,GO:0090502,GO:0097159,GO:1901360,GO:1901363,GO:1901700,GO:1902494,GO:1990234,GO:1990904
Exons2
EggNOG free text desc.snoRNA binding
EggNOG OGsKOG0291@1,KOG0291@2759
EC2.7.11.1
Cds size312
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01001,ko03009
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462734.146831-UTR-Ecto-sp13_S_contig13753:3069..30811681462734.146831-UTR-Ecto-sp13_S_contig13753:3069..3081Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig13753 3070..3081 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462734.167049-CDS-Ecto-sp13_S_contig13753:3081..32231681462734.167049-CDS-Ecto-sp13_S_contig13753:3081..3223Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13753 3082..3223 +
1681462734.1759632-CDS-Ecto-sp13_S_contig13753:3781..39511681462734.1759632-CDS-Ecto-sp13_S_contig13753:3781..3951Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13753 3782..3951 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig13753.2950.1prot_Ecto-sp13_S_contig13753.2950.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig13753 3082..3951 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig13753.2950.1

>prot_Ecto-sp13_S_contig13753.2950.1 ID=prot_Ecto-sp13_S_contig13753.2950.1|Name=mRNA_Ecto-sp13_S_contig13753.2950.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=104bp
MPADVLAVTFRPDGRQLCCACLNGTLQLWGTDGGDLQGIIEGRRDIAGGR
RAHDMVTAANSNHGKYFTSVDYTADGTCVVAAGQSKFVCIYECSQQILVK
KFQV
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mRNA from alignment at Ecto-sp13_S_contig13753:3070..3951+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig13753.2950.1 ID=mRNA_Ecto-sp13_S_contig13753.2950.1|Name=mRNA_Ecto-sp13_S_contig13753.2950.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=882bp|location=Sequence derived from alignment at Ecto-sp13_S_contig13753:3070..3951+ (Ectocarpus species13 EcNAP12_S_4_19m)
CAGACTCTGGAGATGCCCGCAGACGTGTTAGCCGTGACCTTCCGGCCCGA
CGGTAGGCAGCTATGCTGTGCGTGTCTCAACGGTACCTTGCAGCTCTGGG
GCACGGATGGAGGGGACCTGCAGGGAATCATCGAGGGACGTCGCGATATT
GCCGGTAAGTGGCGTATCGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGC
TGCTGCTGCTGCTGCTCTTGCAAGGGTTTTTCTTCCACTCACCGCGAAAC
TCCATTCATCGCATGCCCTGGACCACAGTACTGTGGTATTATCTCGAACG
GGTAGTCTTCCTGTGTGATTGTGATTGTATGTATGCATGCATCTTTTGAA
AAGGTTTGATTGTTTCCCCTACCCAGCACACCTTGGTAGTGTACCGTATT
CTACAACACAAGACCGCACTCACTTAAGTTGTCACCCGTCCACACACAAT
ACCACACTCGGTTGTAATTTTTTTACTGGTCAGAGTGGAAGCCCAATACT
ACTTTCAGATCAATTGGGCGGCATCGTAAGAAAGCGCACCCCACACACAG
TAATTCCGGGCAGTGAAGATTGTCCTAGGAGCGAAGATATTAGATACCAC
TAGGGGGGTATTTTCTTATATCGTATTGCACTACGTTTTGTGCCAGGCAC
CACATAACGTTAGGACACACACACATTTGTTTTTGCCATGCGTTCTCTGT
CCCAATAACCAGGAGGAAGACGCGCCCACGACATGGTAACCGCGGCCAAC
TCGAACCACGGGAAGTACTTCACGAGCGTCGACTACACGGCAGACGGTAC
CTGCGTGGTGGCAGCCGGACAGAGCAAGTTCGTCTGCATCTACGAGTGCT
CGCAGCAGATCTTGGTCAAGAAGTTTCAGGTA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig13753:3070..3951+

>mRNA_Ecto-sp13_S_contig13753.2950.1 ID=mRNA_Ecto-sp13_S_contig13753.2950.1|Name=mRNA_Ecto-sp13_S_contig13753.2950.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=312bp|location=Sequence derived from alignment at Ecto-sp13_S_contig13753:3070..3951+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCCCGCAGACGTGTTAGCCGTGACCTTCCGGCCCGACGGTAGGCAGCT
ATGCTGTGCGTGTCTCAACGGTACCTTGCAGCTCTGGGGCACGGATGGAG
GGGACCTGCAGGGAATCATCGAGGGACGTCGCGATATTGCCGGAGGAAGA
CGCGCCCACGACATGGTAACCGCGGCCAACTCGAACCACGGGAAGTACTT
CACGAGCGTCGACTACACGGCAGACGGTACCTGCGTGGTGGCAGCCGGAC
AGAGCAAGTTCGTCTGCATCTACGAGTGCTCGCAGCAGATCTTGGTCAAG
AAGTTTCAGGTA
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