mRNA_Ecto-sp13_S_contig10289.295.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig10289.295.1
Unique NamemRNA_Ecto-sp13_S_contig10289.295.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig10289.295.1 vs. uniprot
Match: A0A6H5KBF2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBF2_9PHAE)

HSP 1 Score: 147 bits (372), Expect = 3.290e-38
Identity = 110/132 (83.33%), Postives = 112/132 (84.85%), Query Frame = 1 
Query:   82 EPPLEGEPGAAPGGGGRRGRRPPQGLGTAADFHDGGKNXXXXXXXXXXXXXXXXXXXXXLLLSRRESSSASKETRRHNPP---GREAQQGVVNRNSFRPLREGPEEEKLQQLLGTNSRSLPEARGRDSLRRD 468
            EPPL GEPGAAPGGGGR GRRP  GLGTAAD HDGGKN XXXXXXXXXXXXXXXXXXXX L SRRESSSASKETRR NPP   GREAQQ +VNRNSFRPLRE PEEEKLQQ L TNSRSLPE R R  L+RD
Sbjct:    2 EPPLVGEPGAAPGGGGRGGRRPXPGLGTAADMHDGGKNLXXXXXXXXXXXXXXXXXXXXXL-SRRESSSASKETRRRNPPLQPGREAQQEIVNRNSFRPLREDPEEEKLQQFLRTNSRSLPEDRERGHLQRD 132
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig10289.295.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KBF2_9PHAE3.290e-3883.33Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig10289contigEcto-sp13_S_contig10289:5190..5657 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size468
Hectar predicted targeting categoryother localisation
Exons1
Cds size468
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462520.9498785-CDS-Ecto-sp13_S_contig10289:5189..56571681462520.9498785-CDS-Ecto-sp13_S_contig10289:5189..5657Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10289 5190..5657 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig10289.295.1prot_Ecto-sp13_S_contig10289.295.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig10289 5190..5657 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig10289.295.1

>prot_Ecto-sp13_S_contig10289.295.1 ID=prot_Ecto-sp13_S_contig10289.295.1|Name=mRNA_Ecto-sp13_S_contig10289.295.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=156bp
ASGKGRGRETPGRGGRDARSARGARGTEPPLEGEPGAAPGGGGRRGRRPP
QGLGTAADFHDGGKNLSRREMLGLSTAEDVRGGGSNLLLSRRESSSASKE
TRRHNPPGREAQQGVVNRNSFRPLREGPEEEKLQQLLGTNSRSLPEARGR
DSLRRD
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mRNA from alignment at Ecto-sp13_S_contig10289:5190..5657+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig10289.295.1 ID=mRNA_Ecto-sp13_S_contig10289.295.1|Name=mRNA_Ecto-sp13_S_contig10289.295.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=468bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10289:5190..5657+ (Ectocarpus species13 EcNAP12_S_4_19m)
GCGAGTGGCAAGGGGCGGGGCAGGGAGACTCCAGGACGGGGTGGTCGAGA
TGCTCGATCGGCGAGAGGAGCGAGGGGGACGGAACCCCCGCTCGAGGGAG
AGCCAGGCGCTGCACCGGGTGGAGGCGGTCGACGCGGCCGTCGGCCGCCG
CAGGGCTTGGGCACGGCTGCCGATTTTCATGACGGCGGCAAGAACCTGTC
ACGACGAGAGATGCTGGGCTTGAGCACGGCTGAAGATGTTCGCGGCGGTG
GCAGCAACCTGCTCTTGTCGCGACGGGAGTCGTCGTCGGCTTCGAAGGAG
ACGCGTCGTCACAATCCGCCGGGCCGAGAAGCGCAACAAGGGGTTGTAAA
TCGGAACAGTTTCCGCCCGTTGCGGGAAGGTCCCGAAGAAGAAAAGTTGC
AGCAGTTGCTCGGCACCAACAGCCGGTCGCTACCGGAAGCCCGAGGGCGA
GACAGTCTTCGAAGGGAC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig10289:5190..5657+

>mRNA_Ecto-sp13_S_contig10289.295.1 ID=mRNA_Ecto-sp13_S_contig10289.295.1|Name=mRNA_Ecto-sp13_S_contig10289.295.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=468bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10289:5190..5657+ (Ectocarpus species13 EcNAP12_S_4_19m)
GCGAGTGGCAAGGGGCGGGGCAGGGAGACTCCAGGACGGGGTGGTCGAGA
TGCTCGATCGGCGAGAGGAGCGAGGGGGACGGAACCCCCGCTCGAGGGAG
AGCCAGGCGCTGCACCGGGTGGAGGCGGTCGACGCGGCCGTCGGCCGCCG
CAGGGCTTGGGCACGGCTGCCGATTTTCATGACGGCGGCAAGAACCTGTC
ACGACGAGAGATGCTGGGCTTGAGCACGGCTGAAGATGTTCGCGGCGGTG
GCAGCAACCTGCTCTTGTCGCGACGGGAGTCGTCGTCGGCTTCGAAGGAG
ACGCGTCGTCACAATCCGCCGGGCCGAGAAGCGCAACAAGGGGTTGTAAA
TCGGAACAGTTTCCGCCCGTTGCGGGAAGGTCCCGAAGAAGAAAAGTTGC
AGCAGTTGCTCGGCACCAACAGCCGGTCGCTACCGGAAGCCCGAGGGCGA
GACAGTCTTCGAAGGGAC
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