mRNA_Ecto-sp13_S_contig13737.2937.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig13737.2937.1
Unique NamemRNA_Ecto-sp13_S_contig13737.2937.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig13737.2937.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig13737contigEcto-sp13_S_contig13737:3575..3861 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size157
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Cds size135
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462733.1478305-UTR-Ecto-sp13_S_contig13737:3574..35961681462733.1478305-UTR-Ecto-sp13_S_contig13737:3574..3596Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig13737 3575..3596 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462733.156912-CDS-Ecto-sp13_S_contig13737:3596..36541681462733.156912-CDS-Ecto-sp13_S_contig13737:3596..3654Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13737 3597..3654 +
1681462733.1666322-CDS-Ecto-sp13_S_contig13737:3784..38611681462733.1666322-CDS-Ecto-sp13_S_contig13737:3784..3861Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13737 3785..3861 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig13737.2937.1prot_Ecto-sp13_S_contig13737.2937.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig13737 3597..3861 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig13737.2937.1

>prot_Ecto-sp13_S_contig13737.2937.1 ID=prot_Ecto-sp13_S_contig13737.2937.1|Name=mRNA_Ecto-sp13_S_contig13737.2937.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=45bp
MKFLLDAISSTAMLEPLDEGARGGDRQAGPILLCATQNGDNRPRA
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mRNA from alignment at Ecto-sp13_S_contig13737:3575..3861+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig13737.2937.1 ID=mRNA_Ecto-sp13_S_contig13737.2937.1|Name=mRNA_Ecto-sp13_S_contig13737.2937.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=287bp|location=Sequence derived from alignment at Ecto-sp13_S_contig13737:3575..3861+ (Ectocarpus species13 EcNAP12_S_4_19m)
CCCTACCGACGTTTCAGAGGCGATGAAATTCTTGTTGGACGCGATCAGCT
CGACGGCCATGCTTGAGCCGTTGGACGAAGGTGCGATAATCACGTGCTTC
TCTACCTTGCAATTTCGCAGCGTTCGCATCCACCTGTCGCTTTCACGCAC
TTGCCTCTTGTTCTCGGCCGCTGGTCTGATTGTCTCGATTTTCACCTAAC
CGCTGACAAGGCGCTCGCGGGGGGGACAGACAAGCTGGGCCCATCCTCTT
GTGTGCAACTCAAAACGGAGACAACCGGCCGCGGGCG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig13737:3575..3861+

>mRNA_Ecto-sp13_S_contig13737.2937.1 ID=mRNA_Ecto-sp13_S_contig13737.2937.1|Name=mRNA_Ecto-sp13_S_contig13737.2937.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=135bp|location=Sequence derived from alignment at Ecto-sp13_S_contig13737:3575..3861+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGAAATTCTTGTTGGACGCGATCAGCTCGACGGCCATGCTTGAGCCGTT
GGACGAAGGCGCTCGCGGGGGGGACAGACAAGCTGGGCCCATCCTCTTGT
GTGCAACTCAAAACGGAGACAACCGGCCGCGGGCG
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