mRNA_Ecto-sp13_S_contig10286.293.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig10286.293.1
Unique NamemRNA_Ecto-sp13_S_contig10286.293.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig10286.293.1 vs. uniprot
Match: D7FVT9_ECTSI (SAP domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVT9_ECTSI)

HSP 1 Score: 815 bits (2105), Expect = 1.570e-285
Identity = 497/625 (79.52%), Postives = 514/625 (82.24%), Query Frame = 2 
Query:   74 MEESSVSIDEVSSLTVPKLKAELTRLNQPVGGLKRKAQLAEALTAYIEKQQQDGGTEGVGQEKEVDT-PAAGETSPTPAAXXXXXXVQPEEKDAAEEXPKTXXXXXXXPVAADEEVAPMDVAADNGTAEADTPSAQQEETAVAGADNGGSXXXXXDEPVQKEEDPVATGAQVAEPAAADASPAETATRKVRKRTALTDDTEAAPAEQPNTSGAGGADKGEEAGDKAEEQLPKRKQSLPASPAAKRKKVSGGDVAAAAEPEPXXXVEAKSTASAAPEEIAPPEQREKVKETQGNGNGSA---KAGEETAAPAADPMDEEKQAAPSSEPGRADASVPETARTTAAAETAGDQSAPGDGVDGEGDEVVADPVTIRVDNFVRPFTAQQAKKLLEEKAEAPIVEGGFWMDSIKTHCYATFNGKEAAERAMAALQGLQWPAQSFKRLEATMGDMSAEEARARDGSKRSNRPFPGMDRPARVLGPRVTTTAEAKSSPDGGGQANGSGAHTTGESAAVPGGGTTRVRGRGSVQAPGVAGSRGGVLAANVEAEVGRSRGQDRGGLQQPPQGPEEEDESIILDDMFRKTGAKPSLYWLPLSEEEVGLRKKKMEEDGVGPRTTPMPAEHIEAAVKG 1936
            MEESSVSIDEVSSLTVPKLKAELTRLNQPVGGLKRKAQL EALTAYIEKQQQDGGTEG GQ KE +  PAAGETSPTP A      VQP+EKD AEE P+T     XX  AADEEVAPMDVAAD+GTAEADTPSAQQEE AVAGADNG S XXXX             GAQVAEP AADASPAET TR+ RKR+A TDD EAAPAEQPN S   G D+G+EAGDKAEEQLPKRKQSLPASPAAKRKKVSGG          XXX                                     KA EETAAPAADPMDEE+QAAPSSEPGRADAS PETA TTAAAE  GDQSAPGDGV+GEGDEVVADPVTIRVDNFVRPFTAQQAKKLLEEKAEAP++EGGFWMD IKTHCYATF+GKEAAERAMAALQGLQWPAQSFKRLEAT+GDMSAEEARARDGSKRSNRPFPGMDRPARVLGPRVT TAEAKSSP+GGGQANGSGAH T ES+AV GG T RVRGRGSVQAPGVAGSRGGVLAANVEAEVGRSRGQDRGGLQQP QGPEEE E IILDDMFRKT AKPSLYWLPLSEEEVGLRKKKMEEDGVGPRTTPMPAEHIEAA+KG
Sbjct:    1 MEESSVSIDEVSSLTVPKLKAELTRLNQPVGGLKRKAQLVEALTAYIEKQQQDGGTEGSGQGKEAENAPAAGETSPTPEAAAAA--VQPQEKDTAEENPETEPPVQXXXXAADEEVAPMDVAADSGTAEADTPSAQQEEPAVAGADNGSSSXXXXXXXXXXXXXXXXAGAQVAEPTAADASPAETPTRRGRKRSARTDDIEAAPAEQPNPSS--GGDEGKEAGDKAEEQLPKRKQSLPASPAAKRKKVSGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKAAEETAAPAADPMDEEEQAAPSSEPGRADASAPETASTTAAAEXXGDQSAPGDGVEGEGDEVVADPVTIRVDNFVRPFTAQQAKKLLEEKAEAPVMEGGFWMDGIKTHCYATFDGKEAAERAMAALQGLQWPAQSFKRLEATLGDMSAEEARARDGSKRSNRPFPGMDRPARVLGPRVTPTAEAKSSPEGGGQANGSGAHATDESSAVAGGSTARVRGRGSVQAPGVAGSRGGVLAANVEAEVGRSRGQDRGGLQQPQQGPEEEAEPIILDDMFRKTDAKPSLYWLPLSEEEVGLRKKKMEEDGVGPRTTPMPAEHIEAAIKG 621
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BLAST of mRNA_Ecto-sp13_S_contig10286.293.1 vs. uniprot
Match: A0A6H5JTQ3_9PHAE (SAP domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTQ3_9PHAE)

HSP 1 Score: 722 bits (1863), Expect = 2.200e-248
Identity = 475/659 (72.08%), Postives = 486/659 (73.75%), Query Frame = 2 
Query:   74 MEESSVSIDEVSSLTVPKLKAELTRLNQPVGGLKRKAQLAEALTAYIEKQQQDGGTEGVGQEKEVDTPAAGETSPTPAAXXXXXXVQPEEKDAAEEXPKTXXXXXXXPVAADEEVAPMDVAADNGTAEADTPSAQQEETAV-AGADNGGSXXXXXDEPVQKEEDPVATGAQVAEPAAADASPAETATRKVRKRTALTDDTEAAPAEQPNTSGAGGADKGEEAGDKAEEQLPKRKQSLPASPAAKRKKVSGGDVAAAAEPEPXXXVEAKSTASAAPEEIAPPEQREKVKETQGNGNGSAKAGEETAAPAADPMDEEKQAAPSSEPGRADASVPETARTTAAAETAGDQSAPGDGVDGEGDEVVADPVTIRVDNFVRPFTAQQAKK-------------------------------------LLEEKAEAPIVEGGFWMDSIKTHCYATFNGKEAAERAMAALQGLQWPAQSFKRLEATMGDMSAEEARARDGSKRSNRPFPGMDRPARVLGPRVTTTAEAKSSPDGGGQANGSGAHTTGESAAVPGGGTTRVRGRGSVQAPGVAGSRGGVLAANVEAEVGRSRGQDRGGLQQPPQGPEEEDESIILDDMFRKTGAKPSLYWLPLSEEEVGLRKKKMEEDGVGPRTTPMPAEHIEAAVKG 1936
            MEESSVSIDE+SSLTVPKLKAELTRLNQPVGGLKRKAQL EALTAY+EKQQQDGGTEGVGQEKE D PAAGETSP    XXXXXXVQP+EKDAAE XP+TXXXXXXX     EEVAPMDVAADNGTAEADTPSAQQE+ AV AGADNGGS     DE  QKEEDPVATGAQVAEPAAADAS AET TRK RKR A TDDTEAAPAEQP  S                                                  XXXVEAKSTASAAPEE A PEQ                   ETA  AADPMDEE+QAAPSS  G ADASVPE                        GD VVADPVTIRVDNFVRPFTAQQAKK                                     LLEEKAEAP++EGGFWMDSIKTHCYATF+GKEAAERAMAALQGLQWPAQSFKRLEATMGDMSAEEARARDGSKRSNRPFPGMDRPARVLGPRVTTTAEAKSSP+GGGQANGSGAH TGESAAVPGGGT RVRGRGSVQAPGVAGSR GVLAANVEAEVGRSRGQDRGGLQQP QGPEEE E IILDDMFRKTGAKPSLYWLPLSEEEVGLRKKKMEE+GVGPRTTPMPAEHIEAAVKG
Sbjct:    1 MEESSVSIDELSSLTVPKLKAELTRLNQPVGGLKRKAQLVEALTAYMEKQQQDGGTEGVGQEKEADAPAAGETSPX--XXXXXXXVQPDEKDAAEXXPQTXXXXXXXXXXXXEEVAPMDVAADNGTAEADTPSAQQEKPAVVAGADNGGSSATAADESAQKEEDPVATGAQVAEPAAADASTAETPTRKGRKRIARTDDTEAAPAEQPKASXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVEAKSTASAAPEETALPEQEXXXXXXXXXXXXXXXXXXETATLAADPMDEEEQAAPSSVRGGADASVPEXXXXXXXXXXXXXXXXXXXXXXXXGDAVVADPVTIRVDNFVRPFTAQQAKKVGGNASTEDDPTYPSPVFFCCASCLVFVDTPTPKPQQLLEEKAEAPVLEGGFWMDSIKTHCYATFDGKEAAERAMAALQGLQWPAQSFKRLEATMGDMSAEEARARDGSKRSNRPFPGMDRPARVLGPRVTTTAEAKSSPEGGGQANGSGAHITGESAAVPGGGTARVRGRGSVQAPGVAGSRRGVLAANVEAEVGRSRGQDRGGLQQPQQGPEEEAEPIILDDMFRKTGAKPSLYWLPLSEEEVGLRKKKMEEEGVGPRTTPMPAEHIEAAVKG 657
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BLAST of mRNA_Ecto-sp13_S_contig10286.293.1 vs. uniprot
Match: W2LHP1_PHYPR (SAP domain-containing protein n=6 Tax=Phytophthora parasitica TaxID=4792 RepID=W2LHP1_PHYPR)

HSP 1 Score: 84.7 bits (208), Expect = 3.590e-14
Identity = 41/86 (47.67%), Postives = 54/86 (62.79%), Query Frame = 2 
Query: 1169 TIRVDNFVRPFTAQQAKKLLEEKAEAPIVEGGFWMDSIKTHCYATFNGKEAAERAMAALQGLQWPAQSFKRLEATMGDMSAEEARA 1426
            T+R+DNFVRPFT    K L++E      VE GFWMD+IKTHC+ T+   E AE+  AAL G  WP ++ + L   + D +A E RA
Sbjct:  174 TLRIDNFVRPFTLNAVKTLVQELGN--FVEDGFWMDAIKTHCFVTYPTSEIAEKTSAALNGKVWPPENGRSLSVKLADHTAMEVRA 257
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BLAST of mRNA_Ecto-sp13_S_contig10286.293.1 vs. uniprot
Match: H3GQ66_PHYRM (Uncharacterized protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3GQ66_PHYRM)

HSP 1 Score: 83.6 bits (205), Expect = 1.660e-13
Identity = 38/83 (45.78%), Postives = 57/83 (68.67%), Query Frame = 2 
Query: 1169 TIRVDNFVRPFTAQQAKKLLEEKAEAPIVEGGFWMDSIKTHCYATFNGKEAAERAMAALQGLQWPAQSFKRLEATMGDMSAEE 1417
            T+R+DNF+RPFT    K L++E  +   VE GFWMD+IKTHC+ T++  E AE+ +AAL G  WP ++ + L+ T  + +A+E
Sbjct:  191 TLRIDNFIRPFTLNAVKALVQECGD--FVEDGFWMDAIKTHCFVTYSTPEIAEKTIAALNGKVWPPENGRSLKITFTEHTAKE 271
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BLAST of mRNA_Ecto-sp13_S_contig10286.293.1 vs. uniprot
Match: A0A024TNU6_9STRA (SAP domain-containing protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024TNU6_9STRA)

HSP 1 Score: 83.6 bits (205), Expect = 2.180e-13
Identity = 49/132 (37.12%), Postives = 71/132 (53.79%), Query Frame = 2 
Query: 1145 DEVVADPVTIRVDNFVRPFTAQQAKKLLEEKAEAPIVEGGFWMDSIKTHCYATFNGKEAAERAMAALQGLQWPAQSFKRLEATMGDMSAEEARARDGSKRSNRPFPGMDRPARVLGPRVT---TTAEAKSSP 1531
            D ++A   TIR+DNF+RPFT    K  ++E  EA  VE GFWMD+IKTHCY T+   +AA  A   + G  WP  S +RL       +A +   +  +  ++    G +RP+  L  + +   TT EA + P
Sbjct:  153 DSMIAPTPTIRIDNFIRPFTLNAVKAFVQE--EAAFVENGFWMDAIKTHCYVTYATTDAAIAARGRIYGTTWPELSGRRLTVEFSAETAMDIAVKQTTAATSATRRGSNRPSHELPKQQSNKATTDEALTKP 282
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BLAST of mRNA_Ecto-sp13_S_contig10286.293.1 vs. uniprot
Match: W2LJM4_PHYPR (Uncharacterized protein n=2 Tax=Phytophthora parasitica TaxID=4792 RepID=W2LJM4_PHYPR)

HSP 1 Score: 81.6 bits (200), Expect = 2.430e-13
Identity = 39/83 (46.99%), Postives = 52/83 (62.65%), Query Frame = 2 
Query: 1169 TIRVDNFVRPFTAQQAKKLLEEKAEAPIVEGGFWMDSIKTHCYATFNGKEAAERAMAALQGLQWPAQSFKRLEATMGDMSAEE 1417
            T+R+DNFVRPFT    K L++E      VE GFWMD+IKTHC+ T+   E AE+  AAL G  WP ++ + L   + D +A E
Sbjct:  141 TLRIDNFVRPFTLNAVKTLVQELGN--FVEDGFWMDAIKTHCFVTYPTSEIAEKTSAALNGKVWPPENGRSLSVKLADHTAME 221
[Close]
BLAST of mRNA_Ecto-sp13_S_contig10286.293.1 vs. uniprot
Match: W2XC22_PHYPR (Uncharacterized protein n=2 Tax=Phytophthora parasitica TaxID=4792 RepID=W2XC22_PHYPR)

HSP 1 Score: 81.6 bits (200), Expect = 2.430e-13
Identity = 39/83 (46.99%), Postives = 52/83 (62.65%), Query Frame = 2 
Query: 1169 TIRVDNFVRPFTAQQAKKLLEEKAEAPIVEGGFWMDSIKTHCYATFNGKEAAERAMAALQGLQWPAQSFKRLEATMGDMSAEE 1417
            T+R+DNFVRPFT    K L++E      VE GFWMD+IKTHC+ T+   E AE+  AAL G  WP ++ + L   + D +A E
Sbjct:  141 TLRIDNFVRPFTLNAVKTLVQELGN--FVEDGFWMDAIKTHCFVTYPTSEIAEKTSAALNGKVWPPENGRSLSVKLADHTAME 221
[Close]
BLAST of mRNA_Ecto-sp13_S_contig10286.293.1 vs. uniprot
Match: V9FHA7_PHYPR (Uncharacterized protein n=1 Tax=Phytophthora parasitica P1569 TaxID=1317065 RepID=V9FHA7_PHYPR)

HSP 1 Score: 81.6 bits (200), Expect = 2.430e-13
Identity = 39/83 (46.99%), Postives = 52/83 (62.65%), Query Frame = 2 
Query: 1169 TIRVDNFVRPFTAQQAKKLLEEKAEAPIVEGGFWMDSIKTHCYATFNGKEAAERAMAALQGLQWPAQSFKRLEATMGDMSAEE 1417
            T+R+DNFVRPFT    K L++E      VE GFWMD+IKTHC+ T+   E AE+  AAL G  WP ++ + L   + D +A E
Sbjct:  141 TLRIDNFVRPFTLNAVKTLVQELGN--FVEDGFWMDAIKTHCFVTYPTSEIAEKTSAALNGKVWPPENGRSLSVKLADHTAME 221
[Close]
BLAST of mRNA_Ecto-sp13_S_contig10286.293.1 vs. uniprot
Match: A0A8J5J422_9STRA (SAP domain-containing protein n=1 Tax=Phytophthora aleatoria TaxID=2496075 RepID=A0A8J5J422_9STRA)

HSP 1 Score: 81.6 bits (200), Expect = 2.650e-13
Identity = 39/86 (45.35%), Postives = 52/86 (60.47%), Query Frame = 2 
Query: 1169 TIRVDNFVRPFTAQQAKKLLEEKAEAPIVEGGFWMDSIKTHCYATFNGKEAAERAMAALQGLQWPAQSFKRLEATMGDMSAEEARA 1426
            T+R+DNF+RPFT    K L++E      VE GFWMD+IKTHC+ T+   E AE+   AL G  WP ++ + L     D +A E RA
Sbjct:  175 TLRIDNFIRPFTLNAVKALVQELGN--FVEDGFWMDAIKTHCFVTYPTAEIAEKTSTALNGKVWPPENGRSLSVKFADHTAMEVRA 258
[Close]
BLAST of mRNA_Ecto-sp13_S_contig10286.293.1 vs. uniprot
Match: D0NGE4_PHYIT (Uncharacterized protein n=2 Tax=Phytophthora infestans TaxID=4787 RepID=D0NGE4_PHYIT)

HSP 1 Score: 81.3 bits (199), Expect = 4.380e-13
Identity = 41/96 (42.71%), Postives = 54/96 (56.25%), Query Frame = 2 
Query: 1169 TIRVDNFVRPFTAQQAKKLLEEKAEAPIVEGGFWMDSIKTHCYATFNGKEAAERAMAALQGLQWPAQSFKRLEATMGDMSAEEARARDGSKRSNRP 1456
            T+R+DNF+RPFT    K L++E      VE GFWMD+IKTHC+ T+   E A++  AAL G  WP ++ + L     D SA E          NRP
Sbjct:  163 TLRIDNFIRPFTLNAVKALVQELGN--YVEDGFWMDAIKTHCFVTYPTSEIAKKTSAALNGKVWPPENGRSLRVKFADHSAMEVSQHGEENVPNRP 256
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig10286.293.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FVT9_ECTSI1.570e-28579.52SAP domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5JTQ3_9PHAE2.200e-24872.08SAP domain-containing protein n=1 Tax=Ectocarpus s... [more]
W2LHP1_PHYPR3.590e-1447.67SAP domain-containing protein n=6 Tax=Phytophthora... [more]
H3GQ66_PHYRM1.660e-1345.78Uncharacterized protein n=1 Tax=Phytophthora ramor... [more]
A0A024TNU6_9STRA2.180e-1337.12SAP domain-containing protein n=1 Tax=Aphanomyces ... [more]
W2LJM4_PHYPR2.430e-1346.99Uncharacterized protein n=2 Tax=Phytophthora paras... [more]
W2XC22_PHYPR2.430e-1346.99Uncharacterized protein n=2 Tax=Phytophthora paras... [more]
V9FHA7_PHYPR2.430e-1346.99Uncharacterized protein n=1 Tax=Phytophthora paras... [more]
A0A8J5J422_9STRA2.650e-1345.35SAP domain-containing protein n=1 Tax=Phytophthora... [more]
D0NGE4_PHYIT4.380e-1342.71Uncharacterized protein n=2 Tax=Phytophthora infes... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig10286contigEcto-sp13_S_contig10286:521..5916 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score837.8
Seed ortholog evalue3.6e-240
Seed eggNOG ortholog2880.D7FVT9
Preferred nameACIN1
Model size2783
KEGG koko:K01278,ko:K12875,ko:K13781,ko:K15559,ko:K16519,ko:K18732
KEGG TC2.A.3.8.6
KEGG Pathwayko03013,ko03015,ko03040,ko04974,map03013,map03015,map03040,map04974
KEGG ModuleM00430
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000018,GO:0000335,GO:0000337,GO:0000375,GO:0000377,GO:0000398,GO:0002262,GO:0002376,GO:0002520,GO:0002682,GO:0002684,GO:0002761,GO:0002763,GO:0003006,GO:0003674,GO:0003676,GO:0003824,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005730,GO:0005737,GO:0005829,GO:0005886,GO:0006139,GO:0006323,GO:0006396,GO:0006397,GO:0006725,GO:0006807,GO:0006915,GO:0006921,GO:0006996,GO:0007275,GO:0007548,GO:0008150,GO:0008152,GO:0008219,GO:0008380,GO:0008406,GO:0009653,GO:0009887,GO:0009892,GO:0009894,GO:0009987,GO:0010467,GO:0010468,GO:0010506,GO:0010528,GO:0010529,GO:0010605,GO:0010629,GO:0010941,GO:0010942,GO:0012501,GO:0016020,GO:0016043,GO:0016070,GO:0016071,GO:0016462,GO:0016604,GO:0016607,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0019219,GO:0019222,GO:0019899,GO:0022411,GO:0022414,GO:0030097,GO:0030099,GO:0030154,GO:0030218,GO:0030261,GO:0030262,GO:0030263,GO:0030334,GO:0031323,GO:0031324,GO:0031329,GO:0031974,GO:0031981,GO:0032501,GO:0032502,GO:0032879,GO:0032991,GO:0033119,GO:0034101,GO:0034641,GO:0035262,GO:0040012,GO:0042592,GO:0042981,GO:0043065,GO:0043067,GO:0043068,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043484,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044451,GO:0044464,GO:0045137,GO:0045595,GO:0045597,GO:0045637,GO:0045639,GO:0045655,GO:0045657,GO:0045910,GO:0045934,GO:0046483,GO:0048024,GO:0048025,GO:0048513,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048534,GO:0048608,GO:0048731,GO:0048856,GO:0048869,GO:0048872,GO:0050684,GO:0050686,GO:0050789,GO:0050793,GO:0050794,GO:0051052,GO:0051053,GO:0051094,GO:0051171,GO:0051172,GO:0051239,GO:0051240,GO:0051252,GO:0051253,GO:0051270,GO:0051276,GO:0060255,GO:0061458,GO:0061574,GO:0065007,GO:0065008,GO:0070013,GO:0071103,GO:0071704,GO:0071840,GO:0071944,GO:0080090,GO:0090304,GO:0097159,GO:0097194,GO:1901360,GO:1901363,GO:1902105,GO:1902107,GO:1903311,GO:1903312,GO:1903706,GO:1903708,GO:2000026,GO:2000145
Exons5
EggNOG free text desc.apoptotic chromosome condensation
EggNOG OGsKOG2416@1,KOG2416@2759
Ec32 ortholog descriptionSAP domain
Ec32 orthologEc-01_002110.1
EC3.4.14.5
Cds size2031
COG Functional cat.E
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko01002,ko02000,ko03019,ko03021,ko03041,ko04090,ko04147
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig10286.293.1prot_Ecto-sp13_S_contig10286.293.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig10286 594..5237 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462520.7749748-UTR-Ecto-sp13_S_contig10286:520..5931681462520.7749748-UTR-Ecto-sp13_S_contig10286:520..593Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig10286 521..593 +
1681462520.845899-UTR-Ecto-sp13_S_contig10286:5237..59161681462520.845899-UTR-Ecto-sp13_S_contig10286:5237..5916Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig10286 5238..5916 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462520.7860262-CDS-Ecto-sp13_S_contig10286:593..7251681462520.7860262-CDS-Ecto-sp13_S_contig10286:593..725Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10286 594..725 +
1681462520.7994657-CDS-Ecto-sp13_S_contig10286:1404..24211681462520.7994657-CDS-Ecto-sp13_S_contig10286:1404..2421Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10286 1405..2421 +
1681462520.814008-CDS-Ecto-sp13_S_contig10286:3180..33751681462520.814008-CDS-Ecto-sp13_S_contig10286:3180..3375Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10286 3181..3375 +
1681462520.8235931-CDS-Ecto-sp13_S_contig10286:4140..45661681462520.8235931-CDS-Ecto-sp13_S_contig10286:4140..4566Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10286 4141..4566 +
1681462520.8322973-CDS-Ecto-sp13_S_contig10286:4976..52371681462520.8322973-CDS-Ecto-sp13_S_contig10286:4976..5237Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10286 4977..5237 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig10286.293.1

>prot_Ecto-sp13_S_contig10286.293.1 ID=prot_Ecto-sp13_S_contig10286.293.1|Name=mRNA_Ecto-sp13_S_contig10286.293.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=677bp
MEESSVSIDEVSSLTVPKLKAELTRLNQPVGGLKRKAQLAEALTAYIEKQ
QQDGGTEGVGQEKEVDTPAAGETSPTPAAAAAAAAVQPEEKDAAEEDPKT
EPPVQEKPVAADEEVAPMDVAADNGTAEADTPSAQQEETAVAGADNGGSS
AAAADEPVQKEEDPVATGAQVAEPAAADASPAETATRKVRKRTALTDDTE
AAPAEQPNTSGAGGADKGEEAGDKAEEQLPKRKQSLPASPAAKRKKVSGG
DVAAAAEPEPAAAVEAKSTASAAPEEIAPPEQREKVKETQGNGNGSAKAG
EETAAPAADPMDEEKQAAPSSEPGRADASVPETARTTAAAETAGDQSAPG
DGVDGEGDEVVADPVTIRVDNFVRPFTAQQAKKLLEEKAEAPIVEGGFWM
DSIKTHCYATFNGKEAAERAMAALQGLQWPAQSFKRLEATMGDMSAEEAR
ARDGSKRSNRPFPGMDRPARVLGPRVTTTAEAKSSPDGGGQANGSGAHTT
GESAAVPGGGTTRVRGRGSVQAPGVAGSRGGVLAANVEAEVGRSRGQDRG
GLQQPPQGPEEEDESIILDDMFRKTGAKPSLYWLPLSEEEVGLRKKKMEE
DGVGPRTTPMPAEHIEAAVKGGGGGRGSGGGGGGWGGGRRGFGGGSSGPS
RAAGGGYGGGGGVGYYGRAGGGGRRR*
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mRNA from alignment at Ecto-sp13_S_contig10286:521..5916+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig10286.293.1 ID=mRNA_Ecto-sp13_S_contig10286.293.1|Name=mRNA_Ecto-sp13_S_contig10286.293.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=5396bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10286:521..5916+ (Ectocarpus species13 EcNAP12_S_4_19m)
GCAGGTGTGCTTGCGTTTTGATCCGCGGAGAGAGAGTTGTTCCCTGCACA
ACCAACCCTACTCTTTGGGCGCGATGGAGGAGTCCTCGGTGTCCATCGAC
GAGGTGTCGTCTCTAACCGTGCCCAAGCTCAAGGCAGAGCTCACGAGGCT
GAACCAGCCTGTCGGAGGGCTCAAAAGAAAGGCTCAGCTAGCCGAAGCGC
TCACCGTGAGTGCCGTGGTATAATTGGAACCTCGCGGATCCTTCAATTTT
TTGCCGTTCTTTTTTCCAGTGTTGTCACGCGCGGCCGGGCTGCTCGCCGC
ACACGCCTGTACAACTGTCAGCGCCCACTCTAGGGCGGGATTGGCGCGGA
TCCTTCGCTTGGATTGGCACCAAGTAGTAGGAGGGATGGTTCCTGTTATT
TTGGGCTAGATTGCAGCGTCTATGGATTTCAAGAAAGATTGCAATGGATT
TGTAGTGTGCGACGAAGACTACACTTGTACAGTTGTACAGACTTACCTGC
ACACTCTTTAGACTAACACCATCATTTCGCGGAGCTCCCGCTCCCGATCA
ATTTGCGATCATCGCCGAGGAGACTCACTTGTTGCATGATTGCGCATGGA
TGCTTGTGGGCCGAAAGGAAGTGCGGAAGGCGATTGCATGGTGAAGGATG
CCTCGACCCCTCGGCCAGAAGCAATCCTCCGATGCTGAACTAACAAACAC
CGGTTTTTGAGTCGCTCGATTTGTATGCTACCGGGAGGAGCACCAAACCT
ATATATAGTCCGTGTGGTTCGTTTCATGCCAACCGATATTTTTCCTTTTC
ATCGTCGGCCTGAGACAACAAAGGAGTGCACACCTCAGCTCTCTCCTTGG
TGTCCGATTTTTGTCACACCCAACCATCCCCCAGGCATATATCGAGAAAC
AGCAACAAGACGGGGGCACGGAAGGGGTTGGACAGGAAAAAGAAGTCGAC
ACCCCCGCTGCTGGCGAAACCTCCCCAACCCCCGCGGCGGCGGCGGCGGC
GGCAGCGGTGCAGCCGGAAGAGAAAGACGCAGCCGAAGAGGACCCGAAGA
CTGAGCCACCCGTCCAAGAGAAGCCGGTCGCTGCGGACGAGGAGGTGGCG
CCGATGGACGTCGCGGCAGACAACGGCACAGCAGAAGCGGACACACCGTC
GGCGCAGCAGGAAGAAACGGCGGTGGCGGGAGCTGATAACGGCGGCAGCA
GCGCCGCGGCGGCGGACGAACCTGTACAGAAAGAGGAAGACCCGGTGGCG
ACCGGTGCCCAAGTAGCTGAGCCAGCCGCGGCGGACGCATCCCCGGCTGA
GACTGCCACCCGCAAGGTGCGAAAGCGCACCGCTCTTACAGACGACACCG
AGGCAGCTCCAGCCGAGCAACCCAACACTTCCGGTGCCGGTGGCGCCGAC
AAAGGGGAAGAAGCCGGGGACAAGGCCGAGGAACAGTTGCCCAAGCGTAA
GCAGTCCTTGCCAGCGTCGCCGGCTGCGAAGCGAAAGAAGGTTTCCGGCG
GAGATGTTGCTGCTGCTGCGGAACCGGAACCGGCTGCCGCGGTTGAGGCC
AAGAGCACTGCCTCGGCGGCACCCGAAGAGATTGCGCCGCCGGAGCAGCG
GGAGAAGGTTAAGGAGACACAGGGGAATGGTAACGGCAGCGCCAAGGCAG
GGGAGGAAACGGCGGCGCCCGCGGCCGACCCGATGGACGAGGAGAAACAA
GCAGCGCCTTCTTCCGAGCCTGGGCGCGCTGACGCTTCTGTTCCCGAGAC
TGCTCGCACCACCGCCGCCGCTGAAACTGCCGGAGATCAGTCCGCTCCCG
GTGACGGAGTGGATGGTGAGGGAGATGAGGTGGTAGCGGATCCGGTGACT
ATTCGGGTGGATAACTTCGTGCGCCCGTTCACCGCCCAGCAAGCGAAGAA
GGTGGGTGGTGCATTCGAGCACATGCGGTGGAAATCGACTTTGTGCGTTG
GGCTGCTTCCGAATTTTGCATGCATGCCTCGACAAAGGCCAATTTCCGCC
ACGTTTGAAAGAGGGACGGTTTAGAAGTCGCATCAGGGAAACAACCACGC
ATTGCCTGCCCGAGAGCGTCGGTGAACAGACATGGCCATGGTCGCCGGCA
TGCGTTGACTCCCACGGAGGCCGTAGAGCGGCGGCGATGTTGGTCAATGC
TCTGCTTGGCTCTGCCTGGTCACCCCCATTGTAACTTGTTTTTCGGTACT
TCGATTTGTGGGGTGAACTTGAACGCCGCTTTTAGATGTTGGCATGATTC
TTGACCAACCGAACGGGTGGTTTCGCGAGAACCACCGACAAAATCCCTTA
TTTTCGTAGAAAGTTGCATCGCGCAGGAAAACAAGGCAACCACTCGTGGA
CTGGTGCACACTGGAACCGTGGTGTGTGTTCTGTGTCCTGAGAATAGTTT
ATTATCATGATGTCTTTTTGTGGACTTGTCGAACGGCATGTGTATGTTGG
TGGTCAAGCGACATCCTTTATTGAACTACTGTTTTCTGAAGTTGATCCCC
CTCCTTCAGTGTACATGTACGCGAATACAATCCATGTACGACTGCAGGTA
ACAAGAGTGCCGAATGCGACCCCACCCATCCCTCTCCCGTTTCTCTCGTT
TTCTTTTGCTGTGCCTCCTGCTGGGTGTTCGTGGATACCCCAACTCCCAA
ACCGAAACAGCTGCTGGAAGAGAAGGCCGAAGCACCCATCGTGGAAGGTG
GGTTCTGGATGGACAGCATTAAGACACACTGCTACGCCACGTTCAACGGC
AAGGAGGCGGCCGAGAGAGCGATGGCCGCGCTGCAGGGCTTGCAGTGGCC
CGCCCAGAGCTTCAAGCGGCTTGAGGCGACGATGGGAGACATGTCGGCGG
AGGAGGTGGGTGTCGGTGTGTTGCCTTTGGGCGTTTGAATTGTTGGTGAC
GAGTTTTGGTCACGGCCTTCTACAACATTCAACAGTAGAACAGGATCAAG
TTTCGTCTAGGCCCCAGACAACAATCCTGAGGCAAAGTACCTCGGTGTAA
CAAAGGTGGGGTATCTAGTTGTACACCAATCATTGTTTATCCTCGGGTCG
CCGACACCCTGACGTCTCGGTGGAGGCTGTCGGAAATCGGCGGGTTAAAG
GCCTCAATGCGACCGTTGTCTTTTAGCAATATGATCAGGACTAAGCCGCC
GTCCTCTTCGTTCGTCGATATCCGTACAGCCACCGTGTTGCCCGACTGCT
TTCTTTCGCGAGCCGCTGCTGATGCTGCCGATGCTGCTGTGGAGAATATT
GTATTCCTGACTTCTAGAAAGCGCATGAAAGGAAATAGTGTTTAGTGGAT
TGATGGCACGAAACGGAGGTGTTCAGCAGTCCATATGCCCGGGTTCTTCT
AATAGCTCTTTCCATACCCCGTAGCCCTCTTTAAAACCAGCTCACCGCCC
GTCACCTCGTCTCCTTTTCTGAACTTGCGGCTATCTACGCCTCTGTCTGT
CTGTCTGTCTGTCTGTCTGTTTGTCTGTCTGTCTCTGTCTGTCTCTGTCT
CATGCCTCTCTCTGTCTGTGCCTCTCTCTCTATCTCTCTTTCTCTCTTTC
TCTCTCTCCTACCCGATCTGGCCGAAAACCAAAAACGGAACTCGGGCCGC
TTGCAACAACCAATAAACAGGCGAGAGCGCGGGATGGGTCCAAGCGCTCC
AACCGACCTTTCCCCGGCATGGACCGTCCCGCCCGCGTCCTGGGACCCCG
CGTCACCACCACCGCGGAAGCGAAGAGCTCGCCGGATGGCGGCGGCCAGG
CTAATGGCAGCGGCGCCCACACCACTGGCGAATCAGCGGCGGTGCCCGGC
GGCGGCACTACTCGCGTGCGGGGGAGGGGATCGGTGCAGGCCCCGGGCGT
TGCTGGGTCTAGGGGAGGCGTGTTGGCGGCGAACGTAGAGGCCGAGGTCG
GGAGGAGCAGGGGGCAGGACCGAGGGGGGCTCCAGCAGCCGCCGCAAGGG
CCGGAAGAAGAGGACGAGTCGATCATTCTGGACGACATGTTCAGGAAGAC
CGGCGCTAAGCCTTCGCTATACTGGCTGCCGCTCTCGGAGGAAGAGGTGA
GAGAGAGTCGGGGGGATAGGGGGCGTTAGGGGCGATGAGGAAGCAGGTTC
CGATGCTGACGTTGAAGAGATGGTGGGCTCGGAAATAGAGGGGTGCGGAA
TGGCGAAGGTGCTGCAGACCGATCTGCGGCCTGTGCTTGTCTTCCGGATG
CCTCGGTGTGTTGGTTGTATTGTGATAACCTTGCCTCTTTCCTACTGGCT
GGACAACTGCATGCCACTGGCTTACGCCAAAGGCCGTGCTGTTCACTACT
CGCGCAGGCTGGGAGCGCGCACGGCATGTGCTATGCTGTACGCACTCTGG
GCGAGAAATTCGCGTAGCCCATGCCCCCGGCGTTCACGCGTCTTTCTGTG
TTGCTGGAAACAAGAGAACCACTATTTTTGCACCACCGCCAATCCCCCCG
CAATAGGTGGGTCTGCGGAAAAAGAAGATGGAGGAGGACGGCGTGGGCCC
CCGAACAACCCCCATGCCCGCCGAGCACATCGAAGCTGCTGTCAAAGGAG
GAGGCGGAGGACGGGGAAGCGGCGGCGGCGGCGGAGGTTGGGGCGGGGGC
AGGAGGGGCTTCGGGGGTGGCAGCTCCGGTCCTTCGCGCGCTGCTGGTGG
GGGGTACGGTGGTGGAGGAGGGGTAGGGTACTACGGGCGAGCCGGGGGCG
GGGGGAGGCGCAGATAGGCTTTTTCACTAGGCATGGTATGATCGCCATGG
CGATGGTGCGTCGCGATGGAAGTTCTTGGAGGTCTCAAGGAAATATATGG
AGGGAAATATGACCACTACTCTGTTGATGAAGTGCCAATCTACATCCCAC
ACATGCGGCCCTGATTGCGCGATGGGGTAGCGTTTGAACGCGGCGCTCTT
CCCTCCCTTGTACCGTTGAGCCAGGGAGAACGAACGGGTGTGTGCTTCAG
TGTGAGGTGTGCGTGGGCAGAAATTCTAGAATAACTTGCTGCCGATCTTG
CTCGTGTTCCTAGCTGCTACGGAATTTTGAGTTTTACACCCTGCTGCGAA
ACGTGTCAAGCTGTATACACACTAAAGCCGGAGGGCGCGGGGCGCGAAGT
GGCCGGCATGGAAGGGCTCCGGCAACATCGGTGGTGGTGGGATCAACATG
GCACTTATGAGAACAAATAGGGATGCTCGGGGAGTGTGTGCCCGTAGCGT
TGCCAGATTTTCTCTCCGGCGGTACCGCACGATTGCGTAAGGTGTGCTTA
CTATCGTTGTAGCTATTGCTTATGAGGAGACTCTGCGTTACCAACGTGGT
GCAGGGTGGGATAATGTTAGCTAAGCTGGGCGGGCAGAGATCATGTTGAG
ACCAATTTAGTCCAACTTTGGTCAAGAGATGGTTGGTTTTGGGGAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig10286:521..5916+

>mRNA_Ecto-sp13_S_contig10286.293.1 ID=mRNA_Ecto-sp13_S_contig10286.293.1|Name=mRNA_Ecto-sp13_S_contig10286.293.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=2031bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10286:521..5916+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGAGGAGTCCTCGGTGTCCATCGACGAGGTGTCGTCTCTAACCGTGCC
CAAGCTCAAGGCAGAGCTCACGAGGCTGAACCAGCCTGTCGGAGGGCTCA
AAAGAAAGGCTCAGCTAGCCGAAGCGCTCACCGCATATATCGAGAAACAG
CAACAAGACGGGGGCACGGAAGGGGTTGGACAGGAAAAAGAAGTCGACAC
CCCCGCTGCTGGCGAAACCTCCCCAACCCCCGCGGCGGCGGCGGCGGCGG
CAGCGGTGCAGCCGGAAGAGAAAGACGCAGCCGAAGAGGACCCGAAGACT
GAGCCACCCGTCCAAGAGAAGCCGGTCGCTGCGGACGAGGAGGTGGCGCC
GATGGACGTCGCGGCAGACAACGGCACAGCAGAAGCGGACACACCGTCGG
CGCAGCAGGAAGAAACGGCGGTGGCGGGAGCTGATAACGGCGGCAGCAGC
GCCGCGGCGGCGGACGAACCTGTACAGAAAGAGGAAGACCCGGTGGCGAC
CGGTGCCCAAGTAGCTGAGCCAGCCGCGGCGGACGCATCCCCGGCTGAGA
CTGCCACCCGCAAGGTGCGAAAGCGCACCGCTCTTACAGACGACACCGAG
GCAGCTCCAGCCGAGCAACCCAACACTTCCGGTGCCGGTGGCGCCGACAA
AGGGGAAGAAGCCGGGGACAAGGCCGAGGAACAGTTGCCCAAGCGTAAGC
AGTCCTTGCCAGCGTCGCCGGCTGCGAAGCGAAAGAAGGTTTCCGGCGGA
GATGTTGCTGCTGCTGCGGAACCGGAACCGGCTGCCGCGGTTGAGGCCAA
GAGCACTGCCTCGGCGGCACCCGAAGAGATTGCGCCGCCGGAGCAGCGGG
AGAAGGTTAAGGAGACACAGGGGAATGGTAACGGCAGCGCCAAGGCAGGG
GAGGAAACGGCGGCGCCCGCGGCCGACCCGATGGACGAGGAGAAACAAGC
AGCGCCTTCTTCCGAGCCTGGGCGCGCTGACGCTTCTGTTCCCGAGACTG
CTCGCACCACCGCCGCCGCTGAAACTGCCGGAGATCAGTCCGCTCCCGGT
GACGGAGTGGATGGTGAGGGAGATGAGGTGGTAGCGGATCCGGTGACTAT
TCGGGTGGATAACTTCGTGCGCCCGTTCACCGCCCAGCAAGCGAAGAAGC
TGCTGGAAGAGAAGGCCGAAGCACCCATCGTGGAAGGTGGGTTCTGGATG
GACAGCATTAAGACACACTGCTACGCCACGTTCAACGGCAAGGAGGCGGC
CGAGAGAGCGATGGCCGCGCTGCAGGGCTTGCAGTGGCCCGCCCAGAGCT
TCAAGCGGCTTGAGGCGACGATGGGAGACATGTCGGCGGAGGAGGCGAGA
GCGCGGGATGGGTCCAAGCGCTCCAACCGACCTTTCCCCGGCATGGACCG
TCCCGCCCGCGTCCTGGGACCCCGCGTCACCACCACCGCGGAAGCGAAGA
GCTCGCCGGATGGCGGCGGCCAGGCTAATGGCAGCGGCGCCCACACCACT
GGCGAATCAGCGGCGGTGCCCGGCGGCGGCACTACTCGCGTGCGGGGGAG
GGGATCGGTGCAGGCCCCGGGCGTTGCTGGGTCTAGGGGAGGCGTGTTGG
CGGCGAACGTAGAGGCCGAGGTCGGGAGGAGCAGGGGGCAGGACCGAGGG
GGGCTCCAGCAGCCGCCGCAAGGGCCGGAAGAAGAGGACGAGTCGATCAT
TCTGGACGACATGTTCAGGAAGACCGGCGCTAAGCCTTCGCTATACTGGC
TGCCGCTCTCGGAGGAAGAGGTGGGTCTGCGGAAAAAGAAGATGGAGGAG
GACGGCGTGGGCCCCCGAACAACCCCCATGCCCGCCGAGCACATCGAAGC
TGCTGTCAAAGGAGGAGGCGGAGGACGGGGAAGCGGCGGCGGCGGCGGAG
GTTGGGGCGGGGGCAGGAGGGGCTTCGGGGGTGGCAGCTCCGGTCCTTCG
CGCGCTGCTGGTGGGGGGTACGGTGGTGGAGGAGGGGTAGGGTACTACGG
GCGAGCCGGGGGCGGGGGGAGGCGCAGATAG
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