mRNA_Ecto-sp13_S_contig13703.2918.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig13703.2918.1
Unique NamemRNA_Ecto-sp13_S_contig13703.2918.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig13703.2918.1 vs. uniprot
Match: A0A6H5L820_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L820_9PHAE)

HSP 1 Score: 141 bits (356), Expect = 4.780e-39
Identity = 123/147 (83.67%), Postives = 131/147 (89.12%), Query Frame = 2 
Query:   65 MTTTASAPRAFEIHRDAASETIHPTPAVNKAAAAAPCCSPMSLRPVPGSTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSRPPLGSLPSPSGGSGPVGGSGSSTSGWWDMSNKENIDPRIGKQQQRXXXXQRVSPFSSPMLPVG 505
            MTT A APR F+I+RDAA ETIH TPAV++AAAA PC SP+SLRPVP STXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSRP LGSLPSPSGGSGP GGS S+TSGWWD+SNKENIDP  GKQQ  XXXXQRVSPFS+ MLPVG
Sbjct:    1 MTTMAPAPRTFKIYRDAAIETIHATPAVHEAAAATPCSSPVSLRPVPSSTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSRP-LGSLPSPSGGSGPAGGSSSNTSGWWDVSNKENIDPGTGKQQXXXXXXQRVSPFST-MLPVG 145
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig13703.2918.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5L820_9PHAE4.780e-3983.67Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig13703contigEcto-sp13_S_contig13703:334..2153 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size512
Hectar predicted targeting categoryother localisation
Exons2
Cds size447
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462731.904337-CDS-Ecto-sp13_S_contig13703:333..7341681462731.904337-CDS-Ecto-sp13_S_contig13703:333..734Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13703 334..734 -
1681462731.9195445-CDS-Ecto-sp13_S_contig13703:2043..20891681462731.9195445-CDS-Ecto-sp13_S_contig13703:2043..2089Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13703 2044..2089 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462731.9291055-UTR-Ecto-sp13_S_contig13703:2089..21531681462731.9291055-UTR-Ecto-sp13_S_contig13703:2089..2153Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig13703 2090..2153 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig13703.2918.1prot_Ecto-sp13_S_contig13703.2918.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig13703 334..2089 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig13703.2918.1

>prot_Ecto-sp13_S_contig13703.2918.1 ID=prot_Ecto-sp13_S_contig13703.2918.1|Name=mRNA_Ecto-sp13_S_contig13703.2918.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=149bp
MTTTASAPRAFEIHRDAASETIHPTPAVNKAAAAAPCCSPMSLRPVPGST
TTTAARATAAATVSAPERLPPRKRSRQQQKQQSRPPLGSLPSPSGGSGPV
GGSGSSTSGWWDMSNKENIDPRIGKQQQRQQQQQRVSPFSSPMLPVGVP
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mRNA from alignment at Ecto-sp13_S_contig13703:334..2153-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig13703.2918.1 ID=mRNA_Ecto-sp13_S_contig13703.2918.1|Name=mRNA_Ecto-sp13_S_contig13703.2918.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1820bp|location=Sequence derived from alignment at Ecto-sp13_S_contig13703:334..2153- (Ectocarpus species13 EcNAP12_S_4_19m)
CTTCATCCTTTTCGACCCAAGGCCAACTGCCGCGATCAGCAGCAGCTAAT
AAGCTGTATCCACCATGACCACCACGGCATCAGCACCGAGGGCCTTCGAG
ATCCATCGTGGTGAGAAAGGCTGTGCAGTCGTGAGCAATGTTAGGTCCAC
GCCTTCTTCTTTTAGGAAGTTCACAAGAGTCTCACCTGGTGCGTAGGCTA
CTCCTTCGCGTGCCCTTTGTCTTGTTCAAAACGGGGGCCATAATCCGTTG
TGACTCCAGTTTGCTTTGAGCGATCCTACCTCGCCCGGTTGACGTGTGTC
ATGCCCAGTCTCCAAACCGTCGCACCGGGGCCGCTCGCTTTGTCTGGGTC
TCGACCTAACGCGCTTTTGTCTCTGGACCTCCACCAACGCTTAAAGCAAC
AACGACCTTTGTGCGCGCTGCTGTGCAACCAACCAACCGCACCTGCTGTC
ATTTTTTGAAATCCGACCGGTGCCGATGATTTTCAAAACACGATAGTAGA
TCAAACGCCTTCGGAACTATCACCACATGACCTTTTTTTTCGTTGGGCCA
CCGGTGTAGACTACCCATGATTGACGCACACGAGAAGCACGTGAGACTGC
TTGCACGTGCATGCCGCGATGGACGCCTGCTGGCCGCCATTCCCATTTCT
CGGCAACCAACGTCCGAGGCCGTCGATGGCACATGCTGCCTGCTTCCCGA
AAAAAAAAGCGGGGTTGGGAGGTTTGAAAATTGAAATTTCTTCACGTAAG
AGCGCAGGGAAATGAAATACATGTGCACGTTTCGGTTTCTTGGTCTCTAC
GCACAAACCTGGCCACCGTTCCGGCCACGCGTCACTTTTTCGTTGAAGAG
GACGGCCGTCAGCAACAATAGTGGCAGCAGGAGTTGCCGCACCCTTAAAT
GAACAGCTGCCTCGCAACTCTTTTCGGTTCTGGTGACATTCTTTCCATTT
TTTTTCCGGCCAACGTCACACGCTCTCCCTTCCCTTTGTCATCTACTTCG
TTGCAAGTTGCTATAGCATTTTAGTCCGGCCGCCGGGTAGGTCAAAGGCA
GCAGGCTACCACTCCCAAACTTGATTGGTAAAATCTGGTTCAGCCACGAC
TGCGCGTAGCGCCCTTGCTTTTTTCACCCACGCATTTCGTCGGTGACGGA
CAGACGCGCCGGGCGGGCCTCCCACGTTTAGAAACGTCTTGGGATTGAAG
AATCTCGAATGGGTAGTCTTCCTGTGCGTTTATTCATTTTTCCTTCAGCA
AAGAATCCGAATCTAGAAATTCCAACGTGTTGGATCTGCGGCAGTCGCCA
CGCCCCGAGCTAGTGTTCACCGCCCACCGCTGTCCCTTCGGCCTGATTGT
GGTGCCGTGGCTCAGTCTTATCCTACCTCTCCCCCCCCTCTGCTTACTGC
TGTTGTGCTGAAATTGCAGATGCTGCCAGTGAGACGATCCACCCTACTCC
CGCCGTCAACAAAGCGGCGGCGGCAGCCCCCTGTTGTTCGCCCATGTCTC
TGAGGCCAGTGCCCGGTTCTACAACTACGACGGCTGCGCGCGCCACCGCC
GCTGCCACAGTGTCTGCCCCCGAGCGCTTGCCGCCGAGGAAACGTAGCAG
ACAGCAGCAGAAGCAGCAGTCGCGGCCGCCGCTGGGTTCGTTGCCGAGCC
CGAGTGGTGGCAGCGGCCCCGTAGGCGGCAGCGGCAGCAGTACGAGCGGT
TGGTGGGACATGTCGAACAAGGAGAACATCGATCCTAGAATCGGGAAGCA
GCAGCAGCGGCAGCAGCAGCAACAGAGAGTTTCGCCCTTCTCCTCCCCTA
TGCTGCCAGTGGGCGTCCCC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig13703:334..2153-

>mRNA_Ecto-sp13_S_contig13703.2918.1 ID=mRNA_Ecto-sp13_S_contig13703.2918.1|Name=mRNA_Ecto-sp13_S_contig13703.2918.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=447bp|location=Sequence derived from alignment at Ecto-sp13_S_contig13703:334..2153- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGACCACCACGGCATCAGCACCGAGGGCCTTCGAGATCCATCGTGATGC
TGCCAGTGAGACGATCCACCCTACTCCCGCCGTCAACAAAGCGGCGGCGG
CAGCCCCCTGTTGTTCGCCCATGTCTCTGAGGCCAGTGCCCGGTTCTACA
ACTACGACGGCTGCGCGCGCCACCGCCGCTGCCACAGTGTCTGCCCCCGA
GCGCTTGCCGCCGAGGAAACGTAGCAGACAGCAGCAGAAGCAGCAGTCGC
GGCCGCCGCTGGGTTCGTTGCCGAGCCCGAGTGGTGGCAGCGGCCCCGTA
GGCGGCAGCGGCAGCAGTACGAGCGGTTGGTGGGACATGTCGAACAAGGA
GAACATCGATCCTAGAATCGGGAAGCAGCAGCAGCGGCAGCAGCAGCAAC
AGAGAGTTTCGCCCTTCTCCTCCCCTATGCTGCCAGTGGGCGTCCCC
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