mRNA_Ecto-sp13_S_contig13701.2917.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig13701.2917.1
Unique NamemRNA_Ecto-sp13_S_contig13701.2917.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig13701.2917.1 vs. uniprot
Match: A0A6H5JSB2_9PHAE (DUF4440 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JSB2_9PHAE)

HSP 1 Score: 165 bits (417), Expect = 1.660e-48
Identity = 92/102 (90.20%), Postives = 94/102 (92.16%), Query Frame = 2 
Query:  131 MRRFSTTVLASTAVSMLTQDVNAFLAVPSTAPQAVWPVPSSLSVRRWNNRLRPRAWMSEGSRAPATSRRDMFQVAGAAIAATAVGLT-VPVTRSAGAAVTEG 433
            M RFSTTVLASTAVSMLTQDVNAFLAVPSTAPQAVWP PS  SVRRWNNR RPRAWMSEGS APAT+RRDMFQ AGAAIAATA+GLT VPVTRSAGAAVTEG
Sbjct:    1 MGRFSTTVLASTAVSMLTQDVNAFLAVPSTAPQAVWPAPSPSSVRRWNNRPRPRAWMSEGSGAPATTRRDMFQAAGAAIAATAMGLTAVPVTRSAGAAVTEG 102
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig13701.2917.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JSB2_9PHAE1.660e-4890.20DUF4440 domain-containing protein n=2 Tax=Ectocarp... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig13701contigEcto-sp13_S_contig13701:1282..2021 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score141.0
Seed ortholog evalue3.1e-31
Seed eggNOG ortholog2880.D8LKJ7
Model size434
Hectar predicted targeting categorysignal peptide
Exons2
EggNOG free text desc.SnoaL-like domain
EggNOG OGs2S0Y2@2759,COG4875@1
Ec32 ortholog descriptionDomain of unknown function DUF4440
Ec32 orthologEc-16_003210.1
Cds size303
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462731.8446722-CDS-Ecto-sp13_S_contig13701:1281..14841681462731.8446722-CDS-Ecto-sp13_S_contig13701:1281..1484Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13701 1282..1484 -
1681462731.8562436-CDS-Ecto-sp13_S_contig13701:1791..18911681462731.8562436-CDS-Ecto-sp13_S_contig13701:1791..1891Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13701 1792..1891 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462731.8660212-UTR-Ecto-sp13_S_contig13701:1891..20211681462731.8660212-UTR-Ecto-sp13_S_contig13701:1891..2021Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig13701 1892..2021 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig13701.2917.1prot_Ecto-sp13_S_contig13701.2917.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig13701 1282..1891 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig13701.2917.1

>prot_Ecto-sp13_S_contig13701.2917.1 ID=prot_Ecto-sp13_S_contig13701.2917.1|Name=mRNA_Ecto-sp13_S_contig13701.2917.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=101bp
MRRFSTTVLASTAVSMLTQDVNAFLAVPSTAPQAVWPVPSSLSVRRWNNR
LRPRAWMSEGSRAPATSRRDMFQVAGAAIAATAVGLTVPVTRSAGAAVTE
G
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mRNA from alignment at Ecto-sp13_S_contig13701:1282..2021-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig13701.2917.1 ID=mRNA_Ecto-sp13_S_contig13701.2917.1|Name=mRNA_Ecto-sp13_S_contig13701.2917.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=740bp|location=Sequence derived from alignment at Ecto-sp13_S_contig13701:1282..2021- (Ectocarpus species13 EcNAP12_S_4_19m)
AGCTGCACTCGCAGGGCGCCACGTCACACGTGCCGCATTCCTTCACCAAA
GACCTACCGGCAAGCCGACGAGCGAATTCATCCAGTAGTGCAAGCATCAA
GACAAGTTGCACAGCGTGCACAACAACATCATGCGGCGCTTCTCGACCAC
AGTTTTGGCATCGACAGCGGTTTCTATGCTAACGCAGGACGTCAACGCGT
TCTTGGCGGTTCCCTCGACAGCACCACAAGGTGAGGAGCGCCGATTCGTG
GAGAGGCAGGAACTTGCACAGAGTCTCTCTACTTCAAGTATGTTCTTGCG
TAACAAAGTATGTTCTTGGGTAAGCTGATTGCGGCCTGAGGGACCGGGGA
CGACTTGGCTCCGTGTGCTTGATTGCCGAAGACACAGGGGCACTCAACAG
CAGTGTCTCTTGACATCATCGCATGGACAGAACCACACAGTTGACCCTCT
CGCGCAACCGTCCACATGGCTGCTCACGGCTCACCCTGCCGAACGTTTGT
TTCGTCACTTCTGCCGATGTGCGGCCTACTTCAACAGCAGTATGGCCAGT
ACCATCCTCGTTATCCGTCCGGAGATGGAACAACCGGCTCAGGCCTCGCG
CTTGGATGTCTGAGGGCAGCCGGGCGCCCGCGACTTCCAGGAGAGACATG
TTCCAGGTGGCAGGAGCGGCAATCGCTGCTACTGCTGTAGGCCTGACGGT
GCCGGTGACGAGGTCGGCCGGGGCCGCCGTCACGGAGGGC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig13701:1282..2021-

>mRNA_Ecto-sp13_S_contig13701.2917.1 ID=mRNA_Ecto-sp13_S_contig13701.2917.1|Name=mRNA_Ecto-sp13_S_contig13701.2917.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=303bp|location=Sequence derived from alignment at Ecto-sp13_S_contig13701:1282..2021- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCGGCGCTTCTCGACCACAGTTTTGGCATCGACAGCGGTTTCTATGCT
AACGCAGGACGTCAACGCGTTCTTGGCGGTTCCCTCGACAGCACCACAAG
CAGTATGGCCAGTACCATCCTCGTTATCCGTCCGGAGATGGAACAACCGG
CTCAGGCCTCGCGCTTGGATGTCTGAGGGCAGCCGGGCGCCCGCGACTTC
CAGGAGAGACATGTTCCAGGTGGCAGGAGCGGCAATCGCTGCTACTGCTG
TAGGCCTGACGGTGCCGGTGACGAGGTCGGCCGGGGCCGCCGTCACGGAG
GGC
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