mRNA_Ecto-sp13_S_contig13685.2903.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig13685.2903.1
Unique NamemRNA_Ecto-sp13_S_contig13685.2903.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig13685.2903.1 vs. uniprot
Match: A0A6H5JLR5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLR5_9PHAE)

HSP 1 Score: 411 bits (1056), Expect = 1.410e-135
Identity = 348/475 (73.26%), Postives = 357/475 (75.16%), Query Frame = 1 
Query:    1 MIDVEGKKFRVLLGTSPDEVAEWRAERRKRWPTDENKARKEEDEKKRRALGDLGPDPXXXXXXXXXXXXXXXXXXXXXXXXXXGASAQRAAPGQNSAAVSSADAAGTVAGDDGGGAVVDGESASNAGVEGGKRPREEDGVGSSLKVARVDDQXXXXXXXXXRKVAGAGGGNKRLCTFYLKGRCDKGEACTFSHDVERKNCSRQRGGRRHRGCRAATLSRGEEGELKQLGRRLALATPCSHARKIVK-----KNXXXXXXXXXXXXXSKPTLLRKLLAPQLHRESSIALQAVRFIVRSKFFQDDAAAAGGXXXXXXXXEXXXXXXXXSADPAGDPASTGDDT--------------------VVSESAGXXXXXXXXXXXXXXXXXXXXXXFCSAVGAGAVEDTGRDSGGLSTDASGSPAPAAEEGEPAVDAPAXXXXXXXXXXXXXXXXXXXXXXXPAAPSAIAKEAALSAPTGG 1350
            MIDVEGKKFRVLLGTSPDEVAEWRAERRKRWPTDENKARKEEDEKKRRALGDLGPDPXXXXXXXXXXXXXXXXXXXXXXXXXX ASAQRAAPG NSAA+SS  AA TVA DDGGGAVVDGESASNAG EGGKRPREEDG GSSLKVARVDD+          KVAGAGGGNKRLCTFYLKGRCDKGEACTFSHDVERKN                     E  E  +     A A   +   K+ K      N XXXXXXXXXXXXSKPTLLRKLLAPQLHRESSIALQAVRFIV+SKFFQDDAAAAGGXXXXXXX E        S+DPAGDPAS GDDT                    VVSES  XXXXXXXXXXXXXXXXXXXXXX    VGAGAVEDTGR++GGLSTDASG PAPAAEEGEPAVDAPAXXXXXXXXX               AAPS IAKEAALS PT G
Sbjct:  114 MIDVEGKKFRVLLGTSPDEVAEWRAERRKRWPTDENKARKEEDEKKRRALGDLGPDPXXXXXXXXXXXXXXXXXXXXXXXXXXXASAQRAAPGPNSAAISSVGAADTVASDDGGGAVVDGESASNAGAEGGKRPREEDGAGSSLKVARVDDEGAVGQGEGTTKVAGAGGGNKRLCTFYLKGRCDKGEACTFSHDVERKNXXXXXXXXXXXXXXXXXXXXXEAREKAR-----AEAGDNAADEKLTKTERSTSNKXXXXXXXXXXXXSKPTLLRKLLAPQLHRESSIALQAVRFIVQSKFFQDDAAAAGGXXXXXXXPETASAPPSPSSDPAGDPASAGDDTGKQAGGLSTSAPSTAPACDTVVSESXXXXXXXXXXXXXXXXXXXXXXXXXXXXVGAGAVEDTGRETGGLSTDASGFPAPAAEEGEPAVDAPAXXXXXXXXXVPSSRSPPSPTHT--AAPSTIAKEAALSTPTDG 581
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BLAST of mRNA_Ecto-sp13_S_contig13685.2903.1 vs. uniprot
Match: D7FK97_ECTSI (Zinc finger protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FK97_ECTSI)

HSP 1 Score: 341 bits (875), Expect = 3.290e-108
Identity = 340/479 (70.98%), Postives = 345/479 (72.03%), Query Frame = 1 
Query:    1 MIDVEGKKFRVLLGTSPDEVAEWRAERRKRWPTDENKARKEEDEKKRRALGDLGPDPXXXXXXXXXXXXXXXXXXXXXXXXXXGASAQRAAPGQNSAAVSSADAAGTVAGDDGGGAVVDGESASNAGVEGGKRPREEDGVGSSLKVARVDDQXXXXXXXXXRKVAGAGGGNKRLCTFYLKGRCDKGEACTFSHDVERKNCSRQRGGRRHRGCR--------AATLSRGEEGELKQLGRRLALATPCSHARKIVKKNXXXXXXXXXXXXXSKPTLLRKLLAPQLHRESSIALQAVRFIVRSKFFQDDAAAAGGXXXXXXXXEXXXXXXXXSADPAGDPASTGDDT--------------------VVSESAGXXXXXXXXXXXXXXXXXXXXXXFC-SAVGAGAVEDTGRDSGGLSTDASGSPAPAAEEGEPAVDAPAXXXXXXXXXXXXXXXXXXXXXXXPAAPSAIAKEAALSAPTGG 1350
            MIDVEGKKFRVLLGTSPDEVAEWRAERRKRWPTDENKARKEEDEKKRRALGDLGPDPXXXXXXXXXXXXXXXXXXX XXXXXXGASAQRAAPGQN AAVSS               VVDGESASNAG EGGKRPREEDG GSSLKVARV D+         RKVAGAGGGNKRLCTFYLKGRCDKGEACTFSHDVERKN                      A   +R E G+        A     + A K   KN  XXXXXXX    SKPTLLRKLLAPQLHRESSIALQAVRFIV+SKFFQDDAAAAGGXXXXXXX E XXXXXXX       PAS GDDT                    VVSESA XXXXXXXXXXXXXXXXXXXXXX   SAVGA   E TGRD  GLSTDASG      EE EPAVD   XXXXXXXXXXXXXXXXXXXXXX  AAP AIAKEAALSAPT G
Sbjct:  131 MIDVEGKKFRVLLGTSPDEVAEWRAERRKRWPTDENKARKEEDEKKRRALGDLGPDPXXXXXXXXXXXXXXXXXXXGXXXXXXGASAQRAAPGQNGAAVSSXXXXXXXXXXXXXXXVVDGESASNAGAEGGKRPREEDGAGSSLKVARVGDESAVVQGEGTRKVAGAGGGNKRLCTFYLKGRCDKGEACTFSHDVERKNXXXXXXXXXXXXXXXXXXXXXXAREKARAEAGDT-------AADEKLTKAEKSA-KNKKXXXXXXXVSAASKPTLLRKLLAPQLHRESSIALQAVRFIVQSKFFQDDAAAAGGXXXXXXXPETXXXXXXXXXXXXXXPASAGDDTGKQTGDLSTSGPSATPACDTVVSESAXXXXXXXXXXXXXXXXXXXXXXXXXXSAVGAXXXEGTGRD--GLSTDASGXXXXTEEEREPAVDXXXXXXXXXXXXXXXXXXXXXXXXX--AAPPAIAKEAALSAPTDG 597
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BLAST of mRNA_Ecto-sp13_S_contig13685.2903.1 vs. uniprot
Match: A0A7S2RYE8_9STRA (Hypothetical protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RYE8_9STRA)

HSP 1 Score: 73.6 bits (179), Expect = 1.650e-10
Identity = 87/305 (28.52%), Postives = 121/305 (39.67%), Query Frame = 1 
Query:   19 KKFRVLLGTSPDEVAEWRAERRKRWPTDENKARKEEDEKKRRALGDLGPDPXXXXXXXXXXXXXXXXXXXXXXXXXXGASAQRAAP--GQNSAAVSSADAAGTVAGDDGGGAVVDGESASNAGVEGGKRPREEDGVGSSLKVARVDDQXXXXXXXXXRKVAGAGGGNKRLCTFYL-KGRCDKGEACTFSHDVERKNCSRQRGGRRHRGCRAATLSRGEEGELKQLGRRLALATPCSHARKIVKKNXXXXXXXXXXXXXSKPTLLRKLLAPQLHRESSIALQAVRFIVRSKFFQDDAAA----AGG 912
            +KFRVL+GTSP+EVA+WRAERRK WP+  N ARK  ++ +RR+ G L P                            G + +R AP   + +    S  +A T+A           E A   G +      E+D    S  V  V  +          K  G      + C F+L  G+C  G+ C F HD     C                    +    ++  RR + +T  S +   V                 + TLLRKLL  ++ RE S+ LQA+ FIV   +F  DA A    AGG
Sbjct:  125 QKFRVLMGTSPEEVAQWRAERRKNWPSKTNLARKSAEQHERRSRGSLDP-----------------------KATARGGARKRPAPPDARTTGEPPSKKSAATLA-----------ELAMTYGDD------EDDTAVGSTAVDAVSVETPGDMSSEPPKRRG------KPCEFWLHNGKCRNGDKCGFVHDPSPPVCKYFLRXXXXXXXXXXXXXNSQAVRAEREARRGSTSTKASPSSNSV-----------GGLRAQRTTLLRKLLENEMRRERSLVLQAIHFIVECDYFASDAQANSRRAGG 372
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BLAST of mRNA_Ecto-sp13_S_contig13685.2903.1 vs. uniprot
Match: A0A4D9DDZ4_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9DDZ4_9STRA)

HSP 1 Score: 67.4 bits (163), Expect = 2.310e-8
Identity = 80/306 (26.14%), Postives = 125/306 (40.85%), Query Frame = 1 
Query:    1 MIDVEGKKFRVLLGTSPDEVAEWRAERRKRWPTDENKARKEEDEKKRRALGDLGPDPXXXXXXXXXXXXXXXXXXXXXXXXXXGASAQRAAPGQNSAAVSSADAAGTVAGDDGGGAVVDGESASNAGVEGGKRPREEDGVGSSLKV------ARVDDQXXXXXXXXXRKVAGAGGGNKRLCTFYLK--GRCDKGEACTFSHDVERKNCSRQRGGRRHRGCRAATLSRG--EEGELKQLGRRLALATPCSHARKIVKKNXXXXXXXXXXXXXSKPTLLRKLLAPQLHRESSIALQAVRFIVRSKFFQ 888
            +++VEG+++R+L+G +P+EV +WR ERRK +PT +  A++ E+ + RR  G+ G                             G  A +          S  +  G   GD+G   +    S ++ GV G     EE   G+ + V      A +  Q          +     G     C F+ K  G C  GEAC F HD   K    Q  G R    + A    G  +EG  K+   ++ L           +K               +PTLLR+LL  ++ RE  + L ++R++VR+ FFQ
Sbjct:  168 VMNVEGRRYRILVGNAPEEVEQWREERRKNYPTAQAVAKRGEEARARRGRGESG------RKRWRDVVEGAEGERGEGKKQAIGEGAGQMGGLVGGVYASEEEDEGRGEGDEGAEGLGPNASTASPGVVG-----EEGEAGARVSVLHGVCRAYLRSQCPLNATRCRYRHGPRKGSGGLYCRFFSKPKGSCHHGEACQFVHDPALKAELEQWVGERRAQNQEAREGGGGADEGRRKEGRGKMHLEGQ--------RKGGGECEDRKAGGPGREPTLLRRLLGLEVSRERRLVLASIRYLVRASFFQ 454
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BLAST of mRNA_Ecto-sp13_S_contig13685.2903.1 vs. uniprot
Match: A0A024T851_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024T851_9STRA)

HSP 1 Score: 62.4 bits (150), Expect = 9.260e-7
Identity = 52/200 (26.00%), Postives = 82/200 (41.00%), Query Frame = 1 
Query:    4 IDVEGKKFRVLLGTSPDEVAEWRAERRKRWPTDENKARKEEDEKKRRALGDLGPDPXXXXXXXXXXXXXXXXXXXXXXXXXXGASAQRAAPGQNSAAVSSADAAGTVAGDDGGGAVVDGESASNAGVEGGKRPREEDGVGSSLKVARVDDQXXXXXXXXXR-KVAGAGGGNKRLCTFYLKGRCDKGEACTFSHDVERKNC 600
            I+VEG+KF+VL+G SP+E+ +WR ERRK+WP++ N  RK E   +R   GD+  +                                 A PG                         DG + S+A     +RP  E  + ++   A++ D          R K A +   + + C  +++  CD G+ C F+HD+E   C
Sbjct:  290 IEVEGQKFQVLVGNSPEEITKWREERRKKWPSESNVKRKNEQMGERVQAGDIPANKKL--------------------------KTSPALPGP-----------------------TDGTTPSDATSGTAERPAAE--LNAATSAAQLPDNEVASPRSVHRAKPASSKKKSSKFCVKFIRNGCDDGDKCLFNHDIESIPC 438
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BLAST of mRNA_Ecto-sp13_S_contig13685.2903.1 vs. uniprot
Match: A0A067BQB0_SAPPC (Uncharacterized protein n=2 Tax=Saprolegnia TaxID=4769 RepID=A0A067BQB0_SAPPC)

HSP 1 Score: 60.8 bits (146), Expect = 3.030e-6
Identity = 29/52 (55.77%), Postives = 40/52 (76.92%), Query Frame = 1 
Query:    4 IDVEGKKFRVLLGTSPDEVAEWRAERRKRWPTDENKARKEEDEKKRRALGDL 159
            I+VEG+KF VL+G SP+E+A+WR ERRK+WP+D    RK ED ++R   GD+
Sbjct:  382 IEVEGQKFNVLVGNSPEEIAKWREERRKKWPSDAVVKRKLEDNEERVQAGDV 433
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BLAST of mRNA_Ecto-sp13_S_contig13685.2903.1 vs. uniprot
Match: W4FQN8_9STRA (C2H2-type domain-containing protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=W4FQN8_9STRA)

HSP 1 Score: 58.5 bits (140), Expect = 1.100e-5
Identity = 26/52 (50.00%), Postives = 38/52 (73.08%), Query Frame = 1 
Query:    4 IDVEGKKFRVLLGTSPDEVAEWRAERRKRWPTDENKARKEEDEKKRRALGDL 159
            I+VEG+KF VL+G SP+++ +WR ERRK+WP+D N  RK +  + R   GD+
Sbjct:  288 IEVEGQKFHVLVGNSPEDITKWREERRKKWPSDANVKRKNDQHQDRVQAGDV 339
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BLAST of mRNA_Ecto-sp13_S_contig13685.2903.1 vs. uniprot
Match: W4FR42_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=W4FR42_9STRA)

HSP 1 Score: 58.5 bits (140), Expect = 1.530e-5
Identity = 26/52 (50.00%), Postives = 38/52 (73.08%), Query Frame = 1 
Query:    4 IDVEGKKFRVLLGTSPDEVAEWRAERRKRWPTDENKARKEEDEKKRRALGDL 159
            I+VEG+KF VL+G SP+++ +WR ERRK+WP+D N  RK +  + R   GD+
Sbjct:  288 IEVEGQKFHVLVGNSPEDITKWREERRKKWPSDANVKRKNDQHQDRVQAGDV 339
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BLAST of mRNA_Ecto-sp13_S_contig13685.2903.1 vs. uniprot
Match: A0A1W0ABE8_9STRA (Uncharacterized protein n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1W0ABE8_9STRA)

HSP 1 Score: 57.4 bits (137), Expect = 4.630e-5
Identity = 27/52 (51.92%), Postives = 39/52 (75.00%), Query Frame = 1 
Query:    4 IDVEGKKFRVLLGTSPDEVAEWRAERRKRWPTDENKARKEEDEKKRRALGDL 159
            IDVEG+KF VL+G SP+++A+WR ERRK+WP+     RK E+ ++R   GD+
Sbjct:  725 IDVEGQKFTVLVGNSPEDIAKWREERRKKWPSTSVVKRKMEENEERIRAGDV 776
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BLAST of mRNA_Ecto-sp13_S_contig13685.2903.1 vs. uniprot
Match: A0A1V9Z0Q3_9STRA (Uncharacterized protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9Z0Q3_9STRA)

HSP 1 Score: 56.2 bits (134), Expect = 7.390e-5
Identity = 27/52 (51.92%), Postives = 38/52 (73.08%), Query Frame = 1 
Query:    4 IDVEGKKFRVLLGTSPDEVAEWRAERRKRWPTDENKARKEEDEKKRRALGDL 159
            I+VEG+KF VL+G SP+E+A+WR ERRK+WP+     RK E  ++R   GD+
Sbjct:  259 IEVEGQKFTVLVGNSPEEIAKWREERRKKWPSTAVVKRKLEQTEERMLAGDI 310
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig13685.2903.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 11
Match NameE-valueIdentityDescription
A0A6H5JLR5_9PHAE1.410e-13573.26Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FK97_ECTSI3.290e-10870.98Zinc finger protein n=1 Tax=Ectocarpus siliculosus... [more]
A0A7S2RYE8_9STRA1.650e-1028.52Hypothetical protein (Fragment) n=1 Tax=Rhizochrom... [more]
A0A4D9DDZ4_9STRA2.310e-826.14Uncharacterized protein n=1 Tax=Nannochloropsis sa... [more]
A0A024T851_9STRA9.260e-726.00Uncharacterized protein n=1 Tax=Aphanomyces invada... [more]
A0A067BQB0_SAPPC3.030e-655.77Uncharacterized protein n=2 Tax=Saprolegnia TaxID=... [more]
W4FQN8_9STRA1.100e-550.00C2H2-type domain-containing protein n=1 Tax=Aphano... [more]
W4FR42_9STRA1.530e-550.00Uncharacterized protein n=1 Tax=Aphanomyces astaci... [more]
A0A1W0ABE8_9STRA4.630e-551.92Uncharacterized protein n=1 Tax=Thraustotheca clav... [more]
A0A1V9Z0Q3_9STRA7.390e-551.92Uncharacterized protein n=1 Tax=Achlya hypogyna Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig13685contigEcto-sp13_S_contig13685:55..4088 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score345.5
Seed ortholog evalue3.7e-92
Seed eggNOG ortholog2880.D7FK97
Preferred nameZC3H4
Model size1356
KEGG koko:K20915
KEGG Pathwayko04621,map04621
Hectar predicted targeting categoryother localisation
GOsGO:0000122,GO:0000785,GO:0000976,GO:0000977,GO:0000981,GO:0001012,GO:0001067,GO:0001161,GO:0001162,GO:0001227,GO:0001776,GO:0002260,GO:0002376,GO:0002682,GO:0002683,GO:0002694,GO:0002695,GO:0003674,GO:0003676,GO:0003677,GO:0003690,GO:0003700,GO:0003723,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005694,GO:0005700,GO:0005737,GO:0005829,GO:0006139,GO:0006351,GO:0006355,GO:0006357,GO:0006359,GO:0006366,GO:0006383,GO:0006401,GO:0006725,GO:0006807,GO:0007162,GO:0008023,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009058,GO:0009059,GO:0009301,GO:0009889,GO:0009890,GO:0009891,GO:0009892,GO:0009893,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0010557,GO:0010558,GO:0010604,GO:0010605,GO:0010628,GO:0010629,GO:0010941,GO:0010942,GO:0015030,GO:0016070,GO:0016073,GO:0016604,GO:0018130,GO:0019219,GO:0019222,GO:0019438,GO:0019439,GO:0022407,GO:0022408,GO:0030155,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031327,GO:0031328,GO:0031974,GO:0031981,GO:0032774,GO:0032991,GO:0033081,GO:0033085,GO:0034641,GO:0034645,GO:0034654,GO:0034655,GO:0034660,GO:0035327,GO:0035363,GO:0042221,GO:0042592,GO:0042795,GO:0042796,GO:0042981,GO:0043029,GO:0043065,GO:0043067,GO:0043068,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043565,GO:0044212,GO:0044213,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044260,GO:0044265,GO:0044270,GO:0044271,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044444,GO:0044446,GO:0044451,GO:0044464,GO:0045580,GO:0045581,GO:0045595,GO:0045596,GO:0045619,GO:0045620,GO:0045892,GO:0045893,GO:0045934,GO:0045935,GO:0045945,GO:0046483,GO:0046677,GO:0046700,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048872,GO:0050789,GO:0050793,GO:0050794,GO:0050863,GO:0050865,GO:0050866,GO:0050868,GO:0050896,GO:0051093,GO:0051171,GO:0051172,GO:0051173,GO:0051239,GO:0051241,GO:0051249,GO:0051250,GO:0051252,GO:0051253,GO:0051254,GO:0060255,GO:0065007,GO:0065008,GO:0070013,GO:0070228,GO:0070230,GO:0070232,GO:0070234,GO:0070243,GO:0070245,GO:0071025,GO:0071027,GO:0071704,GO:0080090,GO:0090304,GO:0097159,GO:0097659,GO:0098781,GO:0140110,GO:1901360,GO:1901361,GO:1901362,GO:1901363,GO:1901575,GO:1901576,GO:1902105,GO:1902106,GO:1902679,GO:1902680,GO:1903037,GO:1903038,GO:1903506,GO:1903507,GO:1903508,GO:1903706,GO:1903707,GO:1990837,GO:2000026,GO:2000106,GO:2000108,GO:2000112,GO:2000113,GO:2001141
Exons4
EggNOG free text desc.pre-mRNA cleavage required for polyadenylation
EggNOG OGsCOG5084@1,KOG1040@2759
Ec32 ortholog descriptionC2H2 and C3H1 zinc finger protein
Ec32 orthologEc-17_003270.1
Cds size1356
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462730.6669436-CDS-Ecto-sp13_S_contig13685:54..1701681462730.6669436-CDS-Ecto-sp13_S_contig13685:54..170Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13685 55..170 +
1681462730.697693-CDS-Ecto-sp13_S_contig13685:596..10821681462730.697693-CDS-Ecto-sp13_S_contig13685:596..1082Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13685 597..1082 +
1681462730.7175283-CDS-Ecto-sp13_S_contig13685:2804..29421681462730.7175283-CDS-Ecto-sp13_S_contig13685:2804..2942Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13685 2805..2942 +
1681462730.7295198-CDS-Ecto-sp13_S_contig13685:3472..40881681462730.7295198-CDS-Ecto-sp13_S_contig13685:3472..4088Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13685 3473..4088 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig13685.2903.1prot_Ecto-sp13_S_contig13685.2903.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig13685 55..4088 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig13685.2903.1

>prot_Ecto-sp13_S_contig13685.2903.1 ID=prot_Ecto-sp13_S_contig13685.2903.1|Name=mRNA_Ecto-sp13_S_contig13685.2903.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=452bp
MIDVEGKKFRVLLGTSPDEVAEWRAERRKRWPTDENKARKEEDEKKRRAL
GDLGPDPGPAGRGRGRGRGRGRGRDRGGGGGRGGASAQRAAPGQNSAAVS
SADAAGTVAGDDGGGAVVDGESASNAGVEGGKRPREEDGVGSSLKVARVD
DQGAVVQGEGARKVAGAGGGNKRLCTFYLKGRCDKGEACTFSHDVERKNC
SRQRGGRRHRGCRAATLSRGEEGELKQLGRRLALATPCSHARKIVKKNKK
AAAEAAAVAAASKPTLLRKLLAPQLHRESSIALQAVRFIVRSKFFQDDAA
AAGGASAPAAAPETASAPPPPSADPAGDPASTGDDTVVSESAGTGDDAGK
VPSASTPPASATAPAFCSAVGAGAVEDTGRDSGGLSTDASGSPAPAAEEG
EPAVDAPAAAAAAAAAEVAVPSSSSPPSPTPPAAPSAIAKEAALSAPTGG
L*
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mRNA from alignment at Ecto-sp13_S_contig13685:55..4088+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig13685.2903.1 ID=mRNA_Ecto-sp13_S_contig13685.2903.1|Name=mRNA_Ecto-sp13_S_contig13685.2903.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=4034bp|location=Sequence derived from alignment at Ecto-sp13_S_contig13685:55..4088+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGATTGACGTCGAGGGAAAGAAATTCCGAGTGCTGCTGGGAACTAGCCC
CGACGAGGTGGCCGAGTGGAGGGCTGAGAGGAGGAAACGGTGGCCGACAG
ACGAGAACAAGGCCAGGTGCGTTCACCCCTGCCGCCGACCTCACTGCGCC
CCCCCCCGCAAAGCTACCGCGAATCTGGTGCGCGATGGAAAAGATTGCTG
GGGGAAATATTCTTCGTGGTGTAAGGCACCCGTGGTTTTGAGCCAAGGCA
GCCGATTATTCCGGGACTGCTTGCTTCGGGGGTGATCGCCCACCGCAACC
ACGTTTTTGGGGTGGCTGGCCTTGAATACACATGTTGTGGCCAAGTGAGT
CTTGCCCCCCCCCGTTTTGGGGGAGCTGCTACGTGCGGGTTTCAAGCAGT
TGATGGCTGCCGCCCACCTTGGCAAGTAACGGACGAGTGAGGTTGTCCGA
CCTACCACAATCCCCACCCCGCTATCGAGGGTCTACTCATGGTCATGCGT
GGTAACGACCCCCCCCCCCTAACCGAAACACGCCTCAAACAGGAAAGAGG
AGGACGAAAAGAAGCGTAGAGCTCTCGGTGACTTGGGCCCGGACCCCGGT
CCGGCGGGAAGAGGTCGAGGGAGAGGGCGTGGTAGGGGCAGGGGGCGCGA
TAGAGGGGGCGGGGGTGGTAGGGGAGGCGCGTCGGCGCAAAGGGCAGCGC
CAGGCCAAAATAGCGCCGCCGTCTCATCCGCCGACGCCGCCGGCACGGTA
GCCGGCGACGATGGTGGCGGTGCGGTTGTGGATGGCGAGAGCGCAAGCAA
CGCCGGGGTGGAGGGCGGGAAACGCCCGCGGGAAGAGGACGGGGTGGGGA
GTTCGTTAAAGGTGGCCAGGGTTGACGATCAGGGCGCGGTGGTGCAAGGG
GAAGGGGCGAGAAAGGTTGCGGGAGCAGGGGGTGGCAACAAGAGGTTGTG
CACGTTCTACCTCAAGGGTCGGTGCGACAAGGGCGAGGCGTGCACGTTCA
GCCACGACGTCGAGCGAAAGAACTGCAGGTGGGTACGCCCTTGTTGTTTC
TTCATGCCCCGTTTGGGACTGTAGTTCGTGTTTGTCGGCTGTTTACTCTG
GCAGGCCTGTTTCGCGTGGGGTGGAGCAAGTGTTATACCGACCTCGTTCT
GGACGCAACCGTGCAAGCTGGCTGTCGCGTGTTGAGAACACGGCCTGTCT
AGCTCTCCTCTTACTATGAGCAATGGTTTGGTACCCCCCAAACATTCTTA
GGAGCGTTGTTCGGCCCTAATTTGTGCCGTGACTATTTCGATGAACACGC
ACGGCCATGCCCAACATGACACACGAAAGACTCAGCCTCTGGCCGCTTTC
GTATCCTACCTTACGCGTGCAACCACTTACCTGTCCCTCGCAGCCATTTC
ATGGACTGCCGTTGCCACCATTTAACGCACCTCCGTTACCACAAGGCTCA
GCTCCTGCCAATCCTGTGCGACTTGTGCAAGACCATGCTCGCGCTCCTCG
GACAGTTCTTGAATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTCCCCCAGATGAT
AATTGAGGGATAGTCTTTTCGACAACGACGAAGTGCGTTTTGACTTTTTC
GGTAACCAATGGCATAGCCACTTCCAAACTGCAACACGTCTGGGGGACTA
TCGGCGCTTTATGAAATGACGGTTATCGACGATTTTGCTTTCTTCGCACT
CCTTCAGACCCACGATCGCTCGCCACCTCCAGAACAAACTGGAGAGTCGA
AGACCCTTGCAGTAGCGAAAGTCATGGGTCCTCTCTTTTCTTATTCTTGT
CTTGGTGTGAAACCATCAAACATTCGCCGCCCTCTGGTTCCGAACCCTAA
GTTGCACCTTCGACCCCGGCACTCATGCTCCCGACCCCTGTAAATGTGAT
GAATGAGACTATTGTAGACCAGCACTTATTCGGCACCGGCGCATTTTCGC
CAGACGAGAAAACAGGAATAGATACTGTCGTGAAAGTCTCTCCGCGTTTG
CCCCTTGCGGGTGCAGAATGCAGGGCGGCGTTCACTGAACCTCGCCTCTT
TCGAATGCCAGAGTCAGTCGCGCAGTAGTACACATGTACGGTTGACTCGA
AAAAGGCGAGGTGTACATAGCGAAGGCGGCCACGCTTCGCAACCCGCCAG
CCGCCAACGCGGAGGCAGAAGACATCGTGGCTGCCGAGCTGCAACGCTGT
CTCGGGGCGAGGAAGGCGAGCTGAAGCAGCTCGGGCGACGGCTTGCCCTA
GCGACTCCGTGTAGTCACGCCCGGAAGATCGTGAAGAAGTGAATCGACTC
GCCGCCAGCCGGTCGGGTTCCGGCTATCCCAAGAAGCCTTCTTGCCTAGC
ATCCAAGGAGACTCAAACGGGTGGGCGTATTGTGGAGATCCCCTTCGTAA
GGGTACAATCTCCCCAGCGTTGGTCGAGGACGATTGATGCTCTCTTTTCC
CGAAATCCGGTCCTTCAACCGCCTTAGCCGAGCGACTTCAACCGCCCTGG
CCAAGCGATTCTTAACCTGAACACGTAGGCCGAACCAGGGCCCCTTTATA
CCAAATTTATCGGTTGTACGGCAGGACTACCGCTCAATGAAGCCAGTCAG
AACCCCACACAAAGTCAACCTTTCAGCGGCCCCTTTCATGCTCTTCCAGG
GCTAGCCCAAAAAACGTTGTAAACCAACACAATCCTCACCCTAAACCTTA
CGGTTGTAGAAGCCAAACTCACGAGACAAATGCTAAACCGTTGCTTGACT
TTTGACTTTTGACTTTTTACTCCTCGTCTTTATCCGATCCGGTGGACGGT
ATGAAAACACACACACAGGAACAAGAAAGCGGCGGCGGAGGCGGCAGCGG
TAGCGGCGGCGTCCAAGCCCACCCTCCTGCGCAAGCTTCTCGCCCCGCAG
CTGCACCGAGAGAGCAGCATCGCCCTCCAGGCCGTGCGGTTCATCGTCCG
GTCGAAATTCTTCCAGGATGATGCCGCCGCTGCCGGTGGCGCCAGCGCCC
CCGCAGCTGCGCCGGAGACGGCTTCGGCACCACCGCCCCCCTCTGCTGAT
CCAGCTGGTGATCCTGCTAGTACTGGTGATGATACTGTTGTTTCTGAGAG
TGCTGGTACCGGCGATGATGCTGGTAAAGTACCGTCGGCCTCAACCCCAC
CGGCCTCGGCTACCGCTCCGGCTTTTTGTTCTGCTGTTGGTGCTGGTGCC
GTTGAGGATACTGGCAGGGATTCCGGCGGTCTATCGACCGATGCATCGGG
GTCCCCCGCTCCTGCCGCGGAGGAGGGAGAACCCGCTGTCGACGCTCCAG
CGGCGGCGGCGGCGGCGGCGGCGGCGGAGGTAGCAGTGCCATCATCAAGC
TCTCCTCCCTCCCCGACTCCTCCGGCAGCCCCCTCCGCCATCGCTAAGGA
AGCTGCCTTGTCTGCGCCCACCGGTGGCTTGTAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig13685:55..4088+

>mRNA_Ecto-sp13_S_contig13685.2903.1 ID=mRNA_Ecto-sp13_S_contig13685.2903.1|Name=mRNA_Ecto-sp13_S_contig13685.2903.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1356bp|location=Sequence derived from alignment at Ecto-sp13_S_contig13685:55..4088+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGATTGACGTCGAGGGAAAGAAATTCCGAGTGCTGCTGGGAACTAGCCC
CGACGAGGTGGCCGAGTGGAGGGCTGAGAGGAGGAAACGGTGGCCGACAG
ACGAGAACAAGGCCAGGAAAGAGGAGGACGAAAAGAAGCGTAGAGCTCTC
GGTGACTTGGGCCCGGACCCCGGTCCGGCGGGAAGAGGTCGAGGGAGAGG
GCGTGGTAGGGGCAGGGGGCGCGATAGAGGGGGCGGGGGTGGTAGGGGAG
GCGCGTCGGCGCAAAGGGCAGCGCCAGGCCAAAATAGCGCCGCCGTCTCA
TCCGCCGACGCCGCCGGCACGGTAGCCGGCGACGATGGTGGCGGTGCGGT
TGTGGATGGCGAGAGCGCAAGCAACGCCGGGGTGGAGGGCGGGAAACGCC
CGCGGGAAGAGGACGGGGTGGGGAGTTCGTTAAAGGTGGCCAGGGTTGAC
GATCAGGGCGCGGTGGTGCAAGGGGAAGGGGCGAGAAAGGTTGCGGGAGC
AGGGGGTGGCAACAAGAGGTTGTGCACGTTCTACCTCAAGGGTCGGTGCG
ACAAGGGCGAGGCGTGCACGTTCAGCCACGACGTCGAGCGAAAGAACTGC
AGCCGCCAACGCGGAGGCAGAAGACATCGTGGCTGCCGAGCTGCAACGCT
GTCTCGGGGCGAGGAAGGCGAGCTGAAGCAGCTCGGGCGACGGCTTGCCC
TAGCGACTCCGTGTAGTCACGCCCGGAAGATCGTGAAGAAGAACAAGAAA
GCGGCGGCGGAGGCGGCAGCGGTAGCGGCGGCGTCCAAGCCCACCCTCCT
GCGCAAGCTTCTCGCCCCGCAGCTGCACCGAGAGAGCAGCATCGCCCTCC
AGGCCGTGCGGTTCATCGTCCGGTCGAAATTCTTCCAGGATGATGCCGCC
GCTGCCGGTGGCGCCAGCGCCCCCGCAGCTGCGCCGGAGACGGCTTCGGC
ACCACCGCCCCCCTCTGCTGATCCAGCTGGTGATCCTGCTAGTACTGGTG
ATGATACTGTTGTTTCTGAGAGTGCTGGTACCGGCGATGATGCTGGTAAA
GTACCGTCGGCCTCAACCCCACCGGCCTCGGCTACCGCTCCGGCTTTTTG
TTCTGCTGTTGGTGCTGGTGCCGTTGAGGATACTGGCAGGGATTCCGGCG
GTCTATCGACCGATGCATCGGGGTCCCCCGCTCCTGCCGCGGAGGAGGGA
GAACCCGCTGTCGACGCTCCAGCGGCGGCGGCGGCGGCGGCGGCGGCGGA
GGTAGCAGTGCCATCATCAAGCTCTCCTCCCTCCCCGACTCCTCCGGCAG
CCCCCTCCGCCATCGCTAAGGAAGCTGCCTTGTCTGCGCCCACCGGTGGC
TTGTAG
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