mRNA_Ecto-sp13_S_contig13670.2894.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig13670.2894.1
Unique NamemRNA_Ecto-sp13_S_contig13670.2894.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig13670.2894.1 vs. uniprot
Match: D8LIV0_ECTSI (Peptidase A1 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LIV0_ECTSI)

HSP 1 Score: 443 bits (1140), Expect = 3.780e-153
Identity = 221/231 (95.67%), Postives = 224/231 (96.97%), Query Frame = 1 
Query:    1 MVAFPVCSNVTGVDEGDSADEEGGDGDGNACIPFEDTLDETGEKPCRAGTLDGGTVSLHPEDPPGSQFLPYLQDQASVSLSTNVSASGSVFATFNTTVADNSGTLDGWDGAAGVLGLARFPHTTCMSDGTEVNGSLRSVFSQMDGADSVFALDLGDESYNSTLEIGGYSGSSSDTVGDVQWGQRLTAAFPSSWGFPAFDLAVCGRSLMSNITAFWPAVVSTGSACVGLPQE 693
            MVAFPVCSNVTGV+EGDSADEEGG GDGNACIPFEDTLDE GEKPCRAGTLDGGTVSLHPEDPPGSQ LPYLQDQ  VSLSTNVSASGSVFATFNTTVADNSGTLDGWDGAAGVLGLARFPHTTCMSDGTEVNGSLRSVFSQM+GADSVFALDLGDESYNSTLEIGGYSGSSSDTVGDVQWGQRLTAAFPSSWGFPAFDLAVCGRSLM NIT FWPAVVSTGSAC+GLPQE
Sbjct:    1 MVAFPVCSNVTGVEEGDSADEEGGGGDGNACIPFEDTLDEAGEKPCRAGTLDGGTVSLHPEDPPGSQVLPYLQDQE-VSLSTNVSASGSVFATFNTTVADNSGTLDGWDGAAGVLGLARFPHTTCMSDGTEVNGSLRSVFSQMEGADSVFALDLGDESYNSTLEIGGYSGSSSDTVGDVQWGQRLTAAFPSSWGFPAFDLAVCGRSLMGNITTFWPAVVSTGSACLGLPQE 230
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BLAST of mRNA_Ecto-sp13_S_contig13670.2894.1 vs. uniprot
Match: A0A6H5KZM9_9PHAE (Peptidase A1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZM9_9PHAE)

HSP 1 Score: 442 bits (1136), Expect = 1.840e-148
Identity = 221/232 (95.26%), Postives = 224/232 (96.55%), Query Frame = 1 
Query:    1 MVAFPVCSNVTGVDEGDSADEEGGDGDGNACIPFEDTLDETGEKPCRAGTLDGGTVSLHPEDPPGSQFLPYLQDQAS-VSLSTNVSASGSVFATFNTTVADNSGTLDGWDGAAGVLGLARFPHTTCMSDGTEVNGSLRSVFSQMDGADSVFALDLGDESYNSTLEIGGYSGSSSDTVGDVQWGQRLTAAFPSSWGFPAFDLAVCGRSLMSNITAFWPAVVSTGSACVGLPQE 693
            MVAFPVCSNVTGV++G SADEEGG GDG  CIPFEDTLDE GEKPCRAGTLDGGTVSLHPEDPPGSQFLPYLQDQAS VSLSTNVSASGSVFATFNTTVADNSGTLDGWDGAAGVLGLARFPHTTC SDGTEVNGSLRSVFSQMDGADSVFALDLGDESYNSTLEIGGYSGSSSDTVGDVQWGQRLTAAFPSSWGFPAFDLAVCGRSLMSNITAFWPAVVSTGSAC+GLP E
Sbjct:  305 MVAFPVCSNVTGVEDGGSADEEGGGGDGKVCIPFEDTLDEAGEKPCRAGTLDGGTVSLHPEDPPGSQFLPYLQDQASEVSLSTNVSASGSVFATFNTTVADNSGTLDGWDGAAGVLGLARFPHTTCTSDGTEVNGSLRSVFSQMDGADSVFALDLGDESYNSTLEIGGYSGSSSDTVGDVQWGQRLTAAFPSSWGFPAFDLAVCGRSLMSNITAFWPAVVSTGSACLGLPHE 536
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig13670.2894.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LIV0_ECTSI3.780e-15395.67Peptidase A1 domain-containing protein n=1 Tax=Ect... [more]
A0A6H5KZM9_9PHAE1.840e-14895.26Peptidase A1 domain-containing protein n=1 Tax=Ect... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig13670contigEcto-sp13_S_contig13670:181..4222 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score446.4
Seed ortholog evalue7.9e-123
Seed eggNOG ortholog2880.D8LIV0
Model size693
Hectar predicted targeting categoryother localisation
Exons6
EggNOG OGs2DZGB@1,2S70F@2759
Cds size693
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig13670.2894.1prot_Ecto-sp13_S_contig13670.2894.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig13670 181..4222 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462729.9434292-CDS-Ecto-sp13_S_contig13670:180..3301681462729.9434292-CDS-Ecto-sp13_S_contig13670:180..330Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13670 181..330 +
1681462729.955972-CDS-Ecto-sp13_S_contig13670:1086..11671681462729.955972-CDS-Ecto-sp13_S_contig13670:1086..1167Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13670 1087..1167 +
1681462729.9701707-CDS-Ecto-sp13_S_contig13670:1640..17141681462729.9701707-CDS-Ecto-sp13_S_contig13670:1640..1714Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13670 1641..1714 +
1681462729.9805217-CDS-Ecto-sp13_S_contig13670:2316..24261681462729.9805217-CDS-Ecto-sp13_S_contig13670:2316..2426Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13670 2317..2426 +
1681462729.9900863-CDS-Ecto-sp13_S_contig13670:3430..35231681462729.9900863-CDS-Ecto-sp13_S_contig13670:3430..3523Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13670 3431..3523 +
1681462729.998306-CDS-Ecto-sp13_S_contig13670:4037..42221681462729.998306-CDS-Ecto-sp13_S_contig13670:4037..4222Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13670 4038..4222 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig13670.2894.1

>prot_Ecto-sp13_S_contig13670.2894.1 ID=prot_Ecto-sp13_S_contig13670.2894.1|Name=mRNA_Ecto-sp13_S_contig13670.2894.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=231bp
MVAFPVCSNVTGVDEGDSADEEGGDGDGNACIPFEDTLDETGEKPCRAGT
LDGGTVSLHPEDPPGSQFLPYLQDQASVSLSTNVSASGSVFATFNTTVAD
NSGTLDGWDGAAGVLGLARFPHTTCMSDGTEVNGSLRSVFSQMDGADSVF
ALDLGDESYNSTLEIGGYSGSSSDTVGDVQWGQRLTAAFPSSWGFPAFDL
AVCGRSLMSNITAFWPAVVSTGSACVGLPQE
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mRNA from alignment at Ecto-sp13_S_contig13670:181..4222+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig13670.2894.1 ID=mRNA_Ecto-sp13_S_contig13670.2894.1|Name=mRNA_Ecto-sp13_S_contig13670.2894.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=4042bp|location=Sequence derived from alignment at Ecto-sp13_S_contig13670:181..4222+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGTGGCGTTTCCGGTGTGCTCGAACGTGACGGGTGTTGACGAAGGGGA
CTCCGCGGATGAGGAAGGGGGGGACGGCGACGGAAATGCTTGCATTCCCT
TCGAGGACACCCTGGATGAGACTGGGGAGAAGCCCTGCAGAGCCGGAACG
GTGGGTGATAATGGCCATTTACGGCCCATTTACGGCACGGTACAGTTGGA
GGCGCGGGGTGTGGTTATGTACGGCATGTGGGTGGTACATGCGGATGCAG
GGCGACGACTATGAGTGCGGAATGGCGTTGATACTTGGGGTCGTTGGACG
ATAGCGCCTACAAATGCGAACAGAAGCCTTGTGACGGTAGCACCCACAAC
CAACCATTGACCTTTGGCCGTTCTTTGCCGGAAGAACCCAGCGTTAGAGA
TTCCTCCGAAATCGTGAGAGAGTTGGCGGTTGCTTGGTCGGGTGGGTCAG
TCGTGTGCTTGTCCGGAAGGATTAGGTTGTGTCATGTGCGGTCGACATAC
TTGTCGCACCCAGGAGAGGCTCTTCCTTGCTTCGTTGCAAGAGCCACCGG
TTGTTACCGCCCGGAGTTCGGCGTGCGCCCCTAGCGGAGGACCAGAGACT
ATGTTGTTCACCATTTTCGCGAAGAGCTTGAGACGAACTCACCGTACGCG
CGTCTTCTCCCCGGTGCACCTGTGCACGCACCCTTCCGCCCGCCGACCTT
CGTACAGCTGGGTTTACCGTGTTGCTCGAGTCGCCGTTCATCCGTATGTT
TTTTTTTTGCCTTTTTGTGCCTTGCTTGGACTCGCCTCTTTTTTACGTGG
ATAACGAATGCTGCTCGTTACACACGCGAACTCATAACCAAAATTTTGGA
AGTAGTGTTTCTTTTTGTCTGATTTTGTTCTTTGGCGCTCTTCGCGCACG
TGAAAGCTGGACGGAGGGACCGTTTCCCTTCACCCTGAGGACCCTCCTGG
CAGCCAATTCCTCCCCTACCTTCAAGATCAGGCAAGTGTCGCGGTGAACG
TTCGATCCAGTAGAACGCAGAAGGATGTAGCGGGGGCGGGAGACGGCATC
AGAATGACGGCGGGAGGCCGGGGAGACCAGAGGGACGGGGTTTAAGAGCA
GGTTTCCTGAAGCCGACATGGAGGCGAGGGAGGCGAGGTGTGTAGTCTCA
GAGAGACCACGGCAATACGAGAAGGAAGCCCAAGGCTACCTGAAAAAGAA
ACCGGGGCAGAGTAGATGAAGGGCACCAGGAAAAGCCTGGAGACGATGCC
CTTTGTCTTTTTAGCTCGAGGTTCGCGCCTTTTGCAAAGTTTAGATGCAG
CGGCGGGTTTTCGTGCCTGGCACCGGCGTGAAATGCTTTTGTCCCGTTTT
GGGATCACGTGTCGATCGTTTTTCGTGGCGATTATTTCCCCACGTCTTTT
CTCTTCTTCCCGTTGTCTTCTTTTTGTTCCTGCTTGTGGTGCCGTTGTCT
TGCGTAGGAGGTATCCCTCTCGACGAACGTAAGCGCATCAGGAAGCGTTT
TCGCCACTTTCAACACGACCGTCGCCGATAACAGGTGTGTGCATGTGCCT
GCGCATTCATGTTCTTTAGTCGATGCATGTAAGATGTTTGCGTGTGTTTT
GTAAATGTTTGGTTAGTGTTTTACCGCAACAAACGGCCGGCGATAAAAAA
AATATCTCTGGGCCAGCAAGACCCAAAAATATGTTCTCTGCGAATTATTG
TTGTGTTTGATTGGCATTGAATACGTTAACTGGTAGCGGGCACGTGCTGG
TGTTTGTAGAATTGGCATCGACCGTGCTTCATACCCGACTAACTAGTGAA
ATATGTATGGCCATTTTTATTTCTTTGTTGGGCTTCGACCGCGTCAATCA
GCTGACCGATTAAGTATCCCTCTCTGACTTTGTATTTCTGCAGTTTGAGC
AGTTTGTTTTTTTGTTTGATGTTTGTCAAATGATGTCAGTTTGCCTTCTC
CACATGAACAGCCCTCATTTCTCTCGCAGGCTTTGTTTCCCCGGCTGCCG
CCAAACCTAGACGACATCCAGACCCACACGCTTTTGCCACACACCCCGGT
GCCGTCTCTCTCTCTCGCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTT
TCTCTCTCTCTTTCTCTCTCTCTCCCGCCCCTTCAGTGGCACCCTCGACG
GCTGGGATGGCGCCGCCGGGGTGTTGGGCCTAGCTCGGTTCCCCCACACG
ACCTGCATGAGCGATGGGACGGAAGTCAACGGCTCTCTACGGTCAGGTGG
GACGGGGGTAGCGACGCAGTGACGGCGGTAGATATGTTTGTGGAGTGGCA
GCGTTCGTGGCGGTTGTCGTTGTTGCTGTTGGTGGTGGTGGTGTTGTTGG
TGTTAAGGTTTTAGCTGGAATGTGCCGTCACCACGAATTGGGGATCCTAT
CCCCCAGAAAACGCTGTTTGCGCTGGTATTAAAGTTAAATAAACAAGACA
TAAAATGGCATTCCTCTCGCGTGTGGCGGCTGGTTGTCAGGGGCCCTGCA
ACCTCTCGTGCGATACACCCCATGTATTTTTGCGCTTCAGGGATATGTAA
GGAGGGATCCCTCGTTGACTTGTATGAAGCAGTGTTTAGACGAGCGCGCC
TTTCGAGTCGGTGGCACTGCACGTTTGGTTGGTGATAGGGCCTGAATGAC
CCCCGGCACCGCCTTTGAATCTGGTCTACGACAGGAAACCTCACTGACAA
AGCTTCAACACATTCCCTCGAGGGGTGTTGTGCCTCGGCTCGTTGTAGGA
AGTTTGTTCTTCGCAACAGCTTATTGAGAGAGTAGTTTTGAGGGGTAGAG
GCATTGGAAGGGAAGGAAAATTGGTCCCAGTTGGCACCCTGTCGTCGCAT
CCTGCTATTTGACCCTTCACTCTGTTTCAAAGTCGAAAAGGCCCCATGAA
ATCCCGGACCAGCAAGCAGGGTTCTCAGAGGTTGTTGTCGGCATCAGGAG
CACGGAGTAAACGATCTGGCCGGCGAAACGACACCAAATGATGAATCGAT
ACATTGGGGACGCGATAGAATGCGATGCTTGATGCGACGAATCAGCACAA
CGCACGAAAACGATACTTCGGACGATGTCATCCGCATTATTCCAGAGTGC
ACGAAACCATACAACGGGTGAAGAAACAATACGAAGTACAATGGATGAAA
CGGCCGAAACGAAACGAGACAACGAACGAAATGGAACAAAGGATGAAACG
GTGCACATGAACCAACACGATACGACGGACGGGATGAACGCCACCCGCAG
TATTCTCGCAGATGGACGGCGCAGACTCGGTCTTCGCGCTGGACCTTGGA
GACGAGAGCTACAACAGCACCCTCGAGATCGGCGGATACAGCGGTAATAA
GACCACCACCGAGGACTTTGCAAACGGTTTCATGGGGTCACGAGTATGCC
CGACGAAAAAACAACACCACTCTTGTGTCTAGCGGTTGGTTTTCTGTAAC
AGAACGGGACGCATTTTGGTATAACTCTATCAGCAATGGAGCCAAGACGT
GAGGCAGTAAGAGACAACGAGGCTACCAAGCACCAAGCGAGCGTGTTCCG
GCGGGGGCCAGGGGGGCTGTCGAAGCACCAGACTTGAAAAATGATAGGCT
GCCCTTTTTTCTCTCTTTTTTTGCCACTGCCTTGAACGACAACGCTGCTT
GGAAATGGATCCCGGTTTTTTAGAATCGGGTTGCGTTCGTTCTATCCCGT
CATGAAAGCCGGTTGCCCCAGGAGGCCGTCGGCGTTTTTGGTAGCTTACT
CTCCATGACGCTTATCTTGGCCGGTCTGCATGGATTTTCCGCCACGTGTC
TAACGCGTCACGGGACACCGCCCTGTTTCCCGAACACTCGAACGCGCGAC
ACTACAGGCTCGTCGAGCGACACCGTCGGTGACGTCCAGTGGGGGCAAAG
GCTTACGGCGGCTTTCCCCAGCTCTTGGGGCTTCCCGGCCTTCGACCTTG
CCGTCTGCGGTCGGAGCTTGATGAGTAACATCACGGCCTTCTGGCCCGCG
GTGGTGTCGACGGGGTCGGCTTGCGTAGGCCTTCCGCAAGAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig13670:181..4222+

>mRNA_Ecto-sp13_S_contig13670.2894.1 ID=mRNA_Ecto-sp13_S_contig13670.2894.1|Name=mRNA_Ecto-sp13_S_contig13670.2894.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=693bp|location=Sequence derived from alignment at Ecto-sp13_S_contig13670:181..4222+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGTGGCGTTTCCGGTGTGCTCGAACGTGACGGGTGTTGACGAAGGGGA
CTCCGCGGATGAGGAAGGGGGGGACGGCGACGGAAATGCTTGCATTCCCT
TCGAGGACACCCTGGATGAGACTGGGGAGAAGCCCTGCAGAGCCGGAACG
CTGGACGGAGGGACCGTTTCCCTTCACCCTGAGGACCCTCCTGGCAGCCA
ATTCCTCCCCTACCTTCAAGATCAGGCAAGTGTATCCCTCTCGACGAACG
TAAGCGCATCAGGAAGCGTTTTCGCCACTTTCAACACGACCGTCGCCGAT
AACAGTGGCACCCTCGACGGCTGGGATGGCGCCGCCGGGGTGTTGGGCCT
AGCTCGGTTCCCCCACACGACCTGCATGAGCGATGGGACGGAAGTCAACG
GCTCTCTACGGTCAGTATTCTCGCAGATGGACGGCGCAGACTCGGTCTTC
GCGCTGGACCTTGGAGACGAGAGCTACAACAGCACCCTCGAGATCGGCGG
ATACAGCGGCTCGTCGAGCGACACCGTCGGTGACGTCCAGTGGGGGCAAA
GGCTTACGGCGGCTTTCCCCAGCTCTTGGGGCTTCCCGGCCTTCGACCTT
GCCGTCTGCGGTCGGAGCTTGATGAGTAACATCACGGCCTTCTGGCCCGC
GGTGGTGTCGACGGGGTCGGCTTGCGTAGGCCTTCCGCAAGAG
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