prot_Ecto-sp13_S_contig13657.2883.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig13657.2883.1
Unique Nameprot_Ecto-sp13_S_contig13657.2883.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length346
Homology
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BLAST of mRNA_Ecto-sp13_S_contig13657.2883.1 vs. uniprot
Match: A0A6H5KHP8_9PHAE (DNA helicase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHP8_9PHAE)

HSP 1 Score: 275 bits (704), Expect = 9.390e-80
Identity = 218/324 (67.28%), Postives = 223/324 (68.83%), Query Frame = 0 
Query:   33 ACSGKAAAREGSVGCSGSGSAGSGRRSGGGGCGARNVGDWAKKALLRKKFADAERGRRLRLRLEEEAGATATSLAGGCLESCVPRPAAAAVAEQAAMEAVAACSASXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAASVAIPSAVDSAGAASGSGAVSRDDGGAVTSTGVDSSTVVIEVDEYGDDFDFLTDADLQALEDQAAKTSSAXXXXXXXXXXXXXX--TQTRRDVGDHHRGNSSSANGRQTPSPGSANRITGLAGSQAGRNGFNSSDRVAN--------RGGGSGTGGSRAKPQQQPVAGSK 346
            ACS KAAAREGSVG SGS             CG RNVGDWAKKALLRKKFADAERGRRLRLRLEEEAGATATSLAGGCLESCV RP                    XXXXXXXXXXXXXXXXX                              ASVA+PSAVDSAGA SG GA SRDDG      GV SSTVVIEVDEYGDDFDFLTDADLQALEDQAAKTSSA      XXXXXXXX  TQT++DVGDHHRGNS SA+ RQTP PGSANRITGL+GSQAGRNGF SSDR AN        RGGGSG  GSRAKPQQQ VAGSK
Sbjct:   86 ACSSKAAAREGSVGSSGSXXXXXXXXXXXXXCGGRNVGDWAKKALLRKKFADAERGRRLRLRLEEEAGATATSLAGGCLESCVTRPPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPAAPAVSSEEINGNPLAAQHRRSPEATVTVASVAVPSAVDSAGAVSGPGAASRDDGXXXXXVGVGSSTVVIEVDEYGDDFDFLTDADLQALEDQAAKTSSAVASSQLXXXXXXXXXQTQTQKDVGDHHRGNSGSADDRQTPPPGSANRITGLSGSQAGRNGFISSDRSANSGGSGVACRGGGSGREGSRAKPQQQQVAGSK 409
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig13657.2883.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KHP8_9PHAE9.390e-8067.28DNA helicase n=1 Tax=Ectocarpus sp. CCAP 1310/34 T... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig13657contigEcto-sp13_S_contig13657:866..1903 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig13657.2883.1mRNA_Ecto-sp13_S_contig13657.2883.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig13657 866..1905 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig13657.2883.1 ID=prot_Ecto-sp13_S_contig13657.2883.1|Name=mRNA_Ecto-sp13_S_contig13657.2883.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=346bp
SKSRRGGGATGSVDGGGSSLLTRWWQPTTGGGACSGKAAAREGSVGCSGS
GSAGSGRRSGGGGCGARNVGDWAKKALLRKKFADAERGRRLRLRLEEEAG
ATATSLAGGCLESCVPRPAAAAVAEQAAMEAVAACSASGSSVTGSLSPPA
AVAIARTAPAVSAEEVNGIPSAAQHRRSPEATVTAASVAIPSAVDSAGAA
SGSGAVSRDDGGAVTSTGVDSSTVVIEVDEYGDDFDFLTDADLQALEDQA
AKTSSAVASSQLAAAAASQQTQTRRDVGDHHRGNSSSANGRQTPSPGSAN
RITGLAGSQAGRNGFNSSDRVANRGGGSGTGGSRAKPQQQPVAGSK
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