mRNA_Ecto-sp13_S_contig1028.288.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig1028.288.1
Unique NamemRNA_Ecto-sp13_S_contig1028.288.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
[Close]
BLAST of mRNA_Ecto-sp13_S_contig1028.288.1 vs. uniprot
Match: D8LIF1_ECTSI (NUO10 homolog, NADH dehydrogenase (Ubiquinone) subunit 10 n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LIF1_ECTSI)

HSP 1 Score: 437 bits (1125), Expect = 1.970e-148
Identity = 218/220 (99.09%), Postives = 219/220 (99.55%), Query Frame = 1 
Query:    1 PGRGLAIAMQQTRSTAAVYRAPVALLHTTDKKQEQSSKVQDMRKPTSSELTRAENVDQLMQQGKGGVEFVVSKVDDLVNWARKGSLWPMTFGLACCAVEMMHSAASRYDLERFGMVFRASPRQSDVMIVAGTLCNKMAPALRKVYDQMPEPRWVVSMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGLLQLQKKIKGNKSLLLRLKK 660
            P RGLAIAMQQTR+TAAVYRAPVALLHTTDKKQEQSSKVQDMRKPTSSELTRAENVDQLMQQGKGGVEFVVSKVDDLVNWARKGSLWPMTFGLACCAVEMMHSAASRYDLERFGMVFRASPRQSDVMIVAGTLCNKMAPALRKVYDQMPEPRWVVSMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGLLQLQKKIKGNKSLLLRLKK
Sbjct:    6 PRRGLAIAMQQTRATAAVYRAPVALLHTTDKKQEQSSKVQDMRKPTSSELTRAENVDQLMQQGKGGVEFVVSKVDDLVNWARKGSLWPMTFGLACCAVEMMHSAASRYDLERFGMVFRASPRQSDVMIVAGTLCNKMAPALRKVYDQMPEPRWVVSMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGLLQLQKKIKGNKSLLLRLKK 225
[Close]
BLAST of mRNA_Ecto-sp13_S_contig1028.288.1 vs. uniprot
Match: A0A7S2BKW3_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2BKW3_9STRA)

HSP 1 Score: 323 bits (828), Expect = 4.290e-104
Identity = 153/173 (88.44%), Postives = 165/173 (95.38%), Query Frame = 1 
Query:  142 SELTRAENVDQLMQQGKGGVEFVVSKVDDLVNWARKGSLWPMTFGLACCAVEMMHSAASRYDLERFGMVFRASPRQSDVMIVAGTLCNKMAPALRKVYDQMPEPRWVVSMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGLLQLQKKIKGNKSLLLRLKK 660
            S+LT   +V+ LM+  +GGVE+VV+KVDDLVNWARKGSLWPMTFGLACCAVEMMHSAASRYDLERFGMVFRASPRQSDVMIVAGTL NKMAPALRKVYDQMPEPRWVVSMGSCANGGGYYHYSY+VVRGCDRIVPVDIYVPGCPPTAEALLYG+LQLQKK+K NKSLLL+L+K
Sbjct:   29 SDLTARSSVNSLMEDPQGGVEYVVAKVDDLVNWARKGSLWPMTFGLACCAVEMMHSAASRYDLERFGMVFRASPRQSDVMIVAGTLTNKMAPALRKVYDQMPEPRWVVSMGSCANGGGYYHYSYAVVRGCDRIVPVDIYVPGCPPTAEALLYGMLQLQKKVKANKSLLLKLRK 201
[Close]
BLAST of mRNA_Ecto-sp13_S_contig1028.288.1 vs. uniprot
Match: A0A835ZJG3_9STRA (NUO10-like protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZJG3_9STRA)

HSP 1 Score: 323 bits (827), Expect = 8.280e-104
Identity = 162/216 (75.00%), Postives = 184/216 (85.19%), Query Frame = 1 
Query:   16 AIAMQQTRSTAAVYRAPVAL-LHTTDKKQEQSSKVQDMRKPTSSELTRAENVDQLMQQGKGGVEFVVSKVDDLVNWARKGSLWPMTFGLACCAVEMMHSAASRYDLERFGMVFRASPRQSDVMIVAGTLCNKMAPALRKVYDQMPEPRWVVSMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGLLQLQKKIKGNKSLLLRLKK 660
            A+ M Q+++ +A+  AP A  +H+T + +  S              ++ E  DQL+Q  KG VE+VVSKVD+LVNWARKGSLWPMTFGLACCAVEMMH+AASRYD+ERFG+VFRASPRQSDVMIVAGTLCNKMAPALRKVYDQMPEPRWVVSMGSCANGGGYYHYSYSVV+GCDRIVPVDIYVPGCPPTAEALLYGLLQLQKK+KGN+SLLLRL+K
Sbjct:    9 ALCMLQSQAPSALRAAPAARSIHSTHRTESLSP-------------SKVETPDQLLQT-KGKVEYVVSKVDELVNWARKGSLWPMTFGLACCAVEMMHAAASRYDMERFGLVFRASPRQSDVMIVAGTLCNKMAPALRKVYDQMPEPRWVVSMGSCANGGGYYHYSYSVVKGCDRIVPVDIYVPGCPPTAEALLYGLLQLQKKVKGNRSLLLRLRK 210
[Close]
BLAST of mRNA_Ecto-sp13_S_contig1028.288.1 vs. uniprot
Match: A0A7S2RSY8_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RSY8_9STRA)

HSP 1 Score: 321 bits (822), Expect = 6.130e-103
Identity = 150/174 (86.21%), Postives = 166/174 (95.40%), Query Frame = 1 
Query:  139 SSELTRAENVDQLMQQGKGGVEFVVSKVDDLVNWARKGSLWPMTFGLACCAVEMMHSAASRYDLERFGMVFRASPRQSDVMIVAGTLCNKMAPALRKVYDQMPEPRWVVSMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGLLQLQKKIKGNKSLLLRLKK 660
            S+ELT+  NV+ LM+  +GG EFVV+KVDDLVNWAR+GSLWPMTFGLACCAVEMMH+AASRYD+ERFGMVFRASPRQSDVMIVAGTL NKMAPALRKVYDQMPEPRWVVSMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYG+LQLQKK+K +K+LLL+++K
Sbjct:   45 STELTQHNNVNSLMENPRGGAEFVVAKVDDLVNWARRGSLWPMTFGLACCAVEMMHAAASRYDMERFGMVFRASPRQSDVMIVAGTLTNKMAPALRKVYDQMPEPRWVVSMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGMLQLQKKVKSDKTLLLKVRK 218
[Close]
BLAST of mRNA_Ecto-sp13_S_contig1028.288.1 vs. uniprot
Match: B8C955_THAPS (Oxidored_q6 domain-containing protein n=2 Tax=Thalassiosirales TaxID=33847 RepID=B8C955_THAPS)

HSP 1 Score: 320 bits (821), Expect = 8.070e-103
Identity = 158/186 (84.95%), Postives = 168/186 (90.32%), Query Frame = 1 
Query:  121 DMRKPTSSELTRAENVDQLMQQGKGGV------EFVVSKVDDLVNWARKGSLWPMTFGLACCAVEMMHSAASRYDLERFGMVFRASPRQSDVMIVAGTLCNKMAPALRKVYDQMPEPRWVVSMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGLLQLQKKIKGNKSLLLRLKK 660
            D    T+S LTR + VD+L+  G GGV      E+ VS+VDDLVNWARKGSLWPMTFGLACCAVEMMH+AASRYD+ERFGMVFRASPRQSDVMIVAGTL NKMAPALRKVYDQMPEPRWVVSMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGLLQLQKKIKGNKSLLL+L+K
Sbjct:   32 DKASSTTSSLTRLDGVDELLT-GTGGVPTSNKVEYAVSRVDDLVNWARKGSLWPMTFGLACCAVEMMHAAASRYDMERFGMVFRASPRQSDVMIVAGTLTNKMAPALRKVYDQMPEPRWVVSMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGLLQLQKKIKGNKSLLLKLRK 216
[Close]
BLAST of mRNA_Ecto-sp13_S_contig1028.288.1 vs. uniprot
Match: A0A6V1PZF2_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1PZF2_HETAK)

HSP 1 Score: 320 bits (819), Expect = 1.350e-102
Identity = 157/178 (88.20%), Postives = 165/178 (92.70%), Query Frame = 1 
Query:  130 KPTSSELTRAENVDQLMQ-QGKGGVEFVVSKVDDLVNWARKGSLWPMTFGLACCAVEMMHSAASRYDLERFGMVFRASPRQSDVMIVAGTLCNKMAPALRKVYDQMPEPRWVVSMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGLLQLQKKIKGNKSLLLRLKK 660
            K   S+L +A++VD LM  + +  VEFVVSKVDDLVNWARKGSLWPMTFGLACCAVEMMHSAASRYD+ERFGMVFRASPRQSDVMIVAGTL NKMAPALRKVYDQMPEPRWVVSMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGLLQLQKK+K NKSL LRLKK
Sbjct:   34 KRDESDLKQADSVDGLMNSKAQNSVEFVVSKVDDLVNWARKGSLWPMTFGLACCAVEMMHSAASRYDMERFGMVFRASPRQSDVMIVAGTLTNKMAPALRKVYDQMPEPRWVVSMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGLLQLQKKVKTNKSLSLRLKK 211
[Close]
BLAST of mRNA_Ecto-sp13_S_contig1028.288.1 vs. uniprot
Match: K0S487_THAOC (Oxidored_q6 domain-containing protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0S487_THAOC)

HSP 1 Score: 320 bits (820), Expect = 1.400e-102
Identity = 157/181 (86.74%), Postives = 167/181 (92.27%), Query Frame = 1 
Query:  136 TSSELTRAENVDQLMQQGKGGV------EFVVSKVDDLVNWARKGSLWPMTFGLACCAVEMMHSAASRYDLERFGMVFRASPRQSDVMIVAGTLCNKMAPALRKVYDQMPEPRWVVSMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGLLQLQKKIKGNKSLLLRLKK 660
            T+S LTR E VD+++  G GGV      E+ VS+VDDLVNWARKGSLWPMTFGLACCAVEMMH+AASRYD+ERFGMVFRASPRQSDVMIVAGTL NKMAPALRKVYDQMPEPRWVVSMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGLLQLQKKIKGNKSLLL+L+K
Sbjct:   43 TTSSLTRLEGVDEVLT-GMGGVPVNNKVEYAVSRVDDLVNWARKGSLWPMTFGLACCAVEMMHAAASRYDMERFGMVFRASPRQSDVMIVAGTLTNKMAPALRKVYDQMPEPRWVVSMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGLLQLQKKIKGNKSLLLKLRK 222
[Close]
BLAST of mRNA_Ecto-sp13_S_contig1028.288.1 vs. uniprot
Match: A0A482S463_9ARCH (NADH-quinone oxidoreductase subunit B n=2 Tax=cellular organisms TaxID=131567 RepID=A0A482S463_9ARCH)

HSP 1 Score: 318 bits (815), Expect = 1.430e-102
Identity = 149/172 (86.63%), Postives = 161/172 (93.60%), Query Frame = 1 
Query:  145 ELTRAENVDQLMQQGKGGVEFVVSKVDDLVNWARKGSLWPMTFGLACCAVEMMHSAASRYDLERFGMVFRASPRQSDVMIVAGTLCNKMAPALRKVYDQMPEPRWVVSMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGLLQLQKKIKGNKSLLLRLKK 660
            +L + ENV +LM Q    +E+VVSK+DD+VNWARKGS+WPMTFGLACCAVEMMHSAASRYDLERFGMVFRASPRQSDVMIVAGTL NKMAPALRKVYDQMPEPRWVVSMGSCANGGGYYHYSY+VVRGCDRIVPVDIYVPGCPPTAE LLYG+LQLQKK+K NKSLLLRL+K
Sbjct:    2 QLVKKENVGELMGQAHSNLEYVVSKIDDVVNWARKGSMWPMTFGLACCAVEMMHSAASRYDLERFGMVFRASPRQSDVMIVAGTLTNKMAPALRKVYDQMPEPRWVVSMGSCANGGGYYHYSYAVVRGCDRIVPVDIYVPGCPPTAEGLLYGMLQLQKKVKSNKSLLLRLRK 173
[Close]
BLAST of mRNA_Ecto-sp13_S_contig1028.288.1 vs. uniprot
Match: A0A7R9W5P5_9STRA (Hypothetical protein n=2 Tax=Bacillariophyta TaxID=2836 RepID=A0A7R9W5P5_9STRA)

HSP 1 Score: 319 bits (817), Expect = 2.690e-102
Identity = 156/181 (86.19%), Postives = 167/181 (92.27%), Query Frame = 1 
Query:  136 TSSELTRAENVDQLMQQGKGGV------EFVVSKVDDLVNWARKGSLWPMTFGLACCAVEMMHSAASRYDLERFGMVFRASPRQSDVMIVAGTLCNKMAPALRKVYDQMPEPRWVVSMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGLLQLQKKIKGNKSLLLRLKK 660
            T+S LTR + VD+++  G GGV      E+ VS+VDDLVNWARKGSLWPMTFGLACCAVEMMH+AASRYD+ERFGMVFRASPRQSDVMIVAGTL NKMAPALRKVYDQMPEPRWVVSMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALL+GLLQLQKKIKGNKSLLLRL+K
Sbjct:   32 TTSSLTRLDGVDEILT-GTGGVPVENNVEYAVSRVDDLVNWARKGSLWPMTFGLACCAVEMMHAAASRYDMERFGMVFRASPRQSDVMIVAGTLTNKMAPALRKVYDQMPEPRWVVSMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLFGLLQLQKKIKGNKSLLLRLRK 211
[Close]
BLAST of mRNA_Ecto-sp13_S_contig1028.288.1 vs. uniprot
Match: A0A4D9DG66_9STRA (Oxidored_q6 domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9DG66_9STRA)

HSP 1 Score: 318 bits (816), Expect = 6.620e-102
Identity = 154/175 (88.00%), Postives = 167/175 (95.43%), Query Frame = 1 
Query:  139 SSELTRAEN-VDQLMQQGKGGVEFVVSKVDDLVNWARKGSLWPMTFGLACCAVEMMHSAASRYDLERFGMVFRASPRQSDVMIVAGTLCNKMAPALRKVYDQMPEPRWVVSMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGLLQLQKKIKGNKSLLLRLKK 660
            S+E+T+A   VDQL++  K GVE+VVSKVDDLVNWARKGSLWPMTFGLACCAVEMMHSAA+RYD+ERFGMVFRASPRQSDVMIVAGTL NKMAPALRKVYDQMPEPRWVVSMGSCANGGGYYHYSY+VVRGCDRIVPVDIYVPGCPPTAEALLYG+LQLQKK+KGNK LLL+L+K
Sbjct:   54 STEVTKAAGGVDQLLKT-KNGVEYVVSKVDDLVNWARKGSLWPMTFGLACCAVEMMHSAAARYDMERFGMVFRASPRQSDVMIVAGTLTNKMAPALRKVYDQMPEPRWVVSMGSCANGGGYYHYSYAVVRGCDRIVPVDIYVPGCPPTAEALLYGMLQLQKKVKGNKGLLLKLRK 227
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1028.288.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LIF1_ECTSI1.970e-14899.09NUO10 homolog, NADH dehydrogenase (Ubiquinone) sub... [more]
A0A7S2BKW3_9STRA4.290e-10488.44Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A835ZJG3_9STRA8.280e-10475.00NUO10-like protein n=1 Tax=Tribonema minus TaxID=3... [more]
A0A7S2RSY8_9STRA6.130e-10386.21Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
B8C955_THAPS8.070e-10384.95Oxidored_q6 domain-containing protein n=2 Tax=Thal... [more]
A0A6V1PZF2_HETAK1.350e-10288.20Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
K0S487_THAOC1.400e-10286.74Oxidored_q6 domain-containing protein n=1 Tax=Thal... [more]
A0A482S463_9ARCH1.430e-10286.63NADH-quinone oxidoreductase subunit B n=2 Tax=cell... [more]
A0A7R9W5P5_9STRA2.690e-10286.19Hypothetical protein n=2 Tax=Bacillariophyta TaxID... [more]
A0A4D9DG66_9STRA6.620e-10288.00Oxidored_q6 domain-containing protein n=2 Tax=Mono... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig1028contigEcto-sp13_S_contig1028:5496..12711 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score431.0
Seed ortholog evalue3.2e-118
Seed eggNOG ortholog2880.D8LIF1
Preferred namenduf-7
Model size1939
KEGG rclassRC00061
KEGG koko:K03940,ko:K16911
KEGG TC3.D.1.6
KEGG ReactionR11945
KEGG Pathwayko00190,ko01100,ko01110,ko04714,ko04723,ko04932,ko05010,ko05012,ko05016,map00190,map01100,map01110,map04714,map04723,map04932,map05010,map05012,map05016
KEGG ModuleM00143
Hectar predicted targeting categoryother localisation
GOsGO:0000302,GO:0002118,GO:0002121,GO:0003674,GO:0003824,GO:0003954,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0005743,GO:0005746,GO:0005747,GO:0006091,GO:0006119,GO:0006120,GO:0006139,GO:0006163,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0006950,GO:0006979,GO:0006996,GO:0007005,GO:0007275,GO:0007568,GO:0007610,GO:0008150,GO:0008152,GO:0008270,GO:0008340,GO:0009117,GO:0009123,GO:0009126,GO:0009141,GO:0009144,GO:0009150,GO:0009161,GO:0009167,GO:0009199,GO:0009205,GO:0009259,GO:0009987,GO:0010257,GO:0010259,GO:0015980,GO:0016020,GO:0016043,GO:0016310,GO:0016491,GO:0016651,GO:0017144,GO:0019637,GO:0019693,GO:0019866,GO:0022607,GO:0022900,GO:0022904,GO:0030964,GO:0031090,GO:0031966,GO:0031967,GO:0031975,GO:0032501,GO:0032502,GO:0032981,GO:0032991,GO:0033108,GO:0034622,GO:0034641,GO:0042221,GO:0042773,GO:0042775,GO:0043167,GO:0043169,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044281,GO:0044422,GO:0044424,GO:0044425,GO:0044429,GO:0044444,GO:0044446,GO:0044455,GO:0044464,GO:0045271,GO:0045333,GO:0046034,GO:0046483,GO:0046872,GO:0046914,GO:0048856,GO:0050789,GO:0050794,GO:0050803,GO:0050807,GO:0050896,GO:0051128,GO:0051704,GO:0051705,GO:0055086,GO:0055114,GO:0065003,GO:0065007,GO:0065008,GO:0070469,GO:0071704,GO:0071840,GO:0072521,GO:0098796,GO:0098798,GO:0098800,GO:0098803,GO:0099174,GO:1901135,GO:1901360,GO:1901564,GO:1901700,GO:1902494,GO:1990204,GO:2000331
Exons6
EggNOG free text desc.quinone binding
EggNOG OGsCOG0377@1,KOG1687@2759
Ec32 ortholog descriptionNUO10 homolog, NADH dehydrogenase (ubiquinone) subunit 10
Ec32 orthologEc-18_003900.1
EC1.6.5.3,1.6.99.3,3.6.4.13
Cds size639
COG Functional cat.C
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko03009,ko03036
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig1028.288.1prot_Ecto-sp13_S_contig1028.288.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig1028 6772..12687 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462520.1913188-UTR-Ecto-sp13_S_contig1028:5495..67711681462520.1913188-UTR-Ecto-sp13_S_contig1028:5495..6771Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig1028 5496..6771 -
1681462520.2758064-UTR-Ecto-sp13_S_contig1028:12687..127111681462520.2758064-UTR-Ecto-sp13_S_contig1028:12687..12711Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig1028 12688..12711 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462520.2071202-CDS-Ecto-sp13_S_contig1028:6771..69181681462520.2071202-CDS-Ecto-sp13_S_contig1028:6771..6918Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1028 6772..6918 -
1681462520.2186172-CDS-Ecto-sp13_S_contig1028:9139..92261681462520.2186172-CDS-Ecto-sp13_S_contig1028:9139..9226Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1028 9140..9226 -
1681462520.2290208-CDS-Ecto-sp13_S_contig1028:9963..100471681462520.2290208-CDS-Ecto-sp13_S_contig1028:9963..10047Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1028 9964..10047 -
1681462520.238176-CDS-Ecto-sp13_S_contig1028:10753..108961681462520.238176-CDS-Ecto-sp13_S_contig1028:10753..10896Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1028 10754..10896 -
1681462520.2478855-CDS-Ecto-sp13_S_contig1028:11189..112771681462520.2478855-CDS-Ecto-sp13_S_contig1028:11189..11277Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1028 11190..11277 -
1681462520.2650201-CDS-Ecto-sp13_S_contig1028:12597..126871681462520.2650201-CDS-Ecto-sp13_S_contig1028:12597..12687Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1028 12598..12687 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig1028.288.1

>prot_Ecto-sp13_S_contig1028.288.1 ID=prot_Ecto-sp13_S_contig1028.288.1|Name=mRNA_Ecto-sp13_S_contig1028.288.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=213bp
MQQTRSTAAVYRAPVALLHTTDKKQEQSSKVQDMRKPTSSELTRAENVDQ
LMQQGKGGVEFVVSKVDDLVNWARKGSLWPMTFGLACCAVEMMHSAASRY
DLERFGMVFRASPRQSDVMIVAGTLCNKMAPALRKVYDQMPEPRWVVSMG
SCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGLLQLQKKI
KGNKSLLLRLKK*
back to top

mRNA from alignment at Ecto-sp13_S_contig1028:5496..12711-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig1028.288.1 ID=mRNA_Ecto-sp13_S_contig1028.288.1|Name=mRNA_Ecto-sp13_S_contig1028.288.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=7216bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1028:5496..12711- (Ectocarpus species13 EcNAP12_S_4_19m)
CCAGGGCGGGGGCTCGCGATCGCGATGCAACAAACCCGCTCCACCGCCGC
CGTCTACCGCGCTCCCGTGGCCCTCCTCCACACCACGGACAAGAAGCAGG
AGCAGTCCAGCAAGGTTGGTTCGTGATACGGTAGACGGGAAGAACAGAGC
ATGGGTCCGTTCTCGTCGTCTTGACTATTTTCCTTTCCTCGGCACCGCAG
TGGCACAACAACTGCAAGCATGTCATCTGCCCTCGCGCAAGCGGTCGGCT
GCGCAGTCGGCTGCTAACGACAAGAGCAGGTGACACACAGGTTAGGCCTA
TTCCCATCGACCCCCCAAAGAAACCGAATCGGTGACAACAATTCCCCAAT
CGGACAATAAATAAATCCGTGCGTTTATTGCTTGTTCTTATCATCATGTC
ACCGTAAAAAAACGTTTCTTGGTGCTGAATGCACGCCTCTGTTGGCACAC
AACAGGTCAAATCGACTTTGCTCACTGTGGAGCGGTGGTCCAAGCACAAA
AAAGAACGCGGCCACAGAGGACAACACACTTGTAAAGACCCTGTCCACCC
GGCCTGTTGTTTTCAGTACAGGAGGCAGGAAGCAGTGTCGCAAACTGGGT
GTTGTTGGCGACTTCCTCAAGTCCTCCCGCTCATTTTGCCCGTGGTGACC
CAAGTGTGACAATCTTTTTTCACCACTCCATCTCGAAAGCTAGATGACCT
TATCAATCATAGAGCGGCGGCGGCGCTCAGAGTCAGTATCATATGCACGA
CCAATCCGAAAGAAGTAGCGTGTCGGAGACCTTATTGCTCCACTGCTGCG
TGGTGCCGTGGATTTGCCTTGCTGTGTCCGACCAAAAACGGGTCATCTCC
CCGCATTTTTTCAAACGGCAGTTTGGTGATGTGGCAGACATCACTCACAC
ACCTTCTTGAGCAGCACCCAAACTCCAATACCCACGAAGCAGCACGGCGC
CGGGAGTGAGGATCATGTAGACAGCCGAACAGAAGGAATCAGCGCGTTGG
AGGCATCGGCGCTGCTGCTGCGCTCACTCTACTGTATCCGTGTTTGTCGT
GTGTGATGGAAAATATCCCCGCCCGTCAACAGAGGCAGTTGAGACGAGAG
GACCATGCAATGACTCGGTTTGGACAAACAAAGACCTGAACGCGGCTTCT
ACCGCTTCTCTTTCTTTGAAACAGGCCTGGACATAAGTCTAGCATTCTTG
CCAGCACTCTAAGTGGTGCTAGCGCGGTGCGCCTGCCCGGTTCGTCAGTC
AAGGTCCCGGATTTTTTTACGTTTCTGTGAATGGAGCAAGCACGAAAAAT
CGTCGACATGCCTCCCTGCATTTTTTTTAAGGCTCGTCTCGGAACCTTTT
CCGTGACTTTTTCTTCTGATAGGAGTGAGCCTTGCCCCCCGCCCTCACCA
TGTGTCGTTTTTTTTATGGATATGCTCCATGCAGGTACAGGACATGCGCA
AGCCGACCAGCTCTGAGCTGACGAGAGCAGAGAATGTGGACCAGCTCATG
CAGCAGGGAAAGGGCGGAGTTGGTGAGCAAATATATGAATCACGGCGAGG
GGGGGGCATTGATTGACCGCTACAATACGCCACACATGCTCCATCCAGCA
CGAGGAAATGCTGTTGTGTTGGCCTCACAACCAGCCGTGCTAGACGATGA
GACATCTCCTCCGCCCGTGTTGCCGCATGGCCATACCCACCTCGCTTTTG
GAACTACTGGATGCTGTTGGAGCACGCCTTCCCGCCCTTCTCGTCTACGC
ATTTCAACTGTTTGGGCACCTGACCCTCTCATGTCTACCCGTGCTCCGAA
AACCCCACACACCAGAGTTCGTGGTTTCGAAGGTGGACGATCTGGTGAAC
TGGGCGAGGAAGGGGTCGCTGTGGCCGATGACGTTCGGGCTGGCCTGCTG
CGCCGTGGAGATGATGCACTCCGCTGCCTCGCGCTACGACCTCGAGCGCT
TTGGGATGGTGAGTTCCGCCCCCCACCATGTATATGCCCACCTCTTCCCC
TCGTAAACAGATACCCCCCCTTATCCCTCGCCCTCCTCTGTCTCTCCCCG
CTCTTAAGCTTGCGGTGGTTTATTCTGTTTTTCCTTCTGACGGCGTGGTG
TTTTGATGAACGAGAATGCTTGCCGAGGGTGGGGCCGCAGGCAACGGCGC
CGCGCGCGATTGCCTCTTTTGGCGTTGCTGTCGTGGTCTTGAAAGCGCCA
TGTGTGTTTTTCAAGAGCGTTCAGTAATCGTTGACGCCGTTCGTGGTCTC
ACCGGAGTGTTTCATAAAAGCGTTCAGTAGTCGTTGACGCCGTTCATGTT
CTCACGGGAGCTTTTACCGTTAGTCGACGGATTTGTGCGTGTCTTCGGCG
GCGGTGTATCCGTTTTCTTGCGATCGTCCCTCGTGTCCCTCGTGCGGTTG
GGATCAGGTCGACCCGGCACTCCGCCGCGGCCTCCACGATTGCGTTGCCT
TTTTTTTTGTCCTTTTGTTCGGGCTACAAGCCCGCAGGCACTCCGGTATG
CACATCATTTGATGCCAAAATGACACTTTTCACAATTGTTGCTGGACTTT
TGTACAGCTTTGCGTATTGCTTTTTCCCGTATAACATTTCCACGTAGAAC
TAAATACAACATGTCATTTCTTAACCCGGTATGTTGCTGGTACGCTTCTT
GTGGTCGTGAGCAGGTGTTCCGGGCGTCGCCGCGGCAGTCGGACGTGATG
ATCGTGGCGGGCACGCTGTGCAACAAGATGGCACCAGCGCTGCGTAAGGT
AGGAGGGGTCGGAGTTACAGGACTTGAGAGAGAGAAATTGAAGGGGAAAG
AGGAGGTAGAAACAGAAACGGAGAAGGAGAGATTGCGCAAACGCACCGTC
ACAGCAGTGCGCCGATCTCACCCCCCCGCCACCGTTGGGCAAATTGGTTG
TAGGCACACGATCCCGCCCTTACTCATGTGTGGAGCATCGATATTGGGAA
TTCTGTTATCTTATCTGTGTGGAGAACCAATCTCACCGATGGTTGATCGA
ACAAACGTTTCACACAACAGCTGTTTTTTTGTTTTTTGTGCTAAACCTTG
CTGGGACTAGACGCTCTCGTCGGTCTCTCTGGTTTACCTGTTTCGCAGCC
AGTGAAACAAGCGATTCCAGAATCCTCTTCACCGATGAAATCAAAAGGAG
GCGTCCACCGTAGAGAAAATTGCTCTGTTTAGCTCCCGAGAAGTAGAGCA
GGCAAGACCGTGCTGTATGTATGTGTCGATGCCGCGGCCAACAACACAAG
TCATGACTTTTACCTCGTAGTAAATACAAACCAGGAAGACATCGCTGGCG
CGGCGGGACTCCTGCGCATGTGTCATCCGTAGAGATCCCACCGCTTACTA
CGTCACCACTTGTCTCCTGCCGTCTACCTTGGCATGGATAGGGCATTGGA
GTATCCCTCCACGTGGGGGATGCTGTGTTTTGAAGCATCACTCGCTCCTT
TTTTCTCACCGCCTCGTTCTGTGTCTCCCGGGCAGGTTTACGATCAGATG
CCCGAGCCGCGTTGGGTGGTGTCCATGGGGTCTTGCGCGAACGGGGGTGG
CTACTACCACTACTCGTACTCGGTAAGCGGTCGAGTGGTGTGCGCGAAGA
TGAAACGGGGTATAGCAGGGGCATGTTCAGACTCTTGTCGACCGGACGCG
TTTACCTCTCGAACACACGCTGATGTTGTTGTCATGTTGTACGGGGAAAG
TGCTAGTTTTGTATGCTCCCAACTTGGGACCAGTGCGACTTTCCGATGTT
GTACTTTTTTGTTTCACGCCTTCGGTTCGGCTCGATATCCAACGTCGGTG
TCTTACCCATGTGACACACGAGTAAACTAGCATGAGAAACCGGGTCGCTA
GATTTCCGGTAGACACAGCATTGTATCAATGGATACATCATCGTGTCAGC
GGATACATTCCTTTGCCCCAATCATGGATACATTCCTGGGCGTATACACA
TGACACCGACGAAAGTTGAGAAGGCCGGACAACGGATGCCATCTTCGGCG
AGCGGCGGAAGTCGGCGTCAACGCCTCGTAGTTTCCTGTGTGTGCCGTCG
ATTTTGCTTGTTCTCGCTCTGCCTTCGATTTCAAAGTCGGCCGTGATTCG
TGGTGCGTAGATATTGACATATTTCAAGTGGTGGAGTTCCTCACGTGCAT
GGACGAAGCTTGCCGACTCATCATTGGGAACAAGCAGGCCAAACTGCTTC
TACCCCTCCGCCGTTAGCAAACGAGCCAAATACCCCCAAGGGATGGGTTA
TTCTCAGTGATCGCCGTTACCTGTGTACCGGTAATTACCGGTATCAAGGT
TGGGGGTGCGGTAACAAAAAAAAATCGAGGTAATTGAGTTGCCCCCTGAG
GGCTACATCCACGGGACCCCCTCTTGCGTGCCACAGCAGAGCGGTGTGAC
AGCAGACAGACAGCAGACAGTAGACAGCAGGCAGCAGACAGTAGACAGCA
GACAGCAGACAGACCCTAGCCCAACGAAGCACACACGTAGCACTTGATTG
CAGGCCATGAGCAATCATCGAGGGTCCTCCTCTTGGGGGAGTGTGGGCCC
TGCACTTAGTTTAGAAGACGAGAACGCTGAAGGCCGCGCCGGGTTTCTTG
CGTTTGTCGATGTCACGAAGGCACATTCCGCCCACTCCATCATGCTATTA
ATAGTCACGTGCAAGACGTGCAGCAAAGAGATGCCGGGCACCAAACAATG
TATCATATCGGAACAGCAGCACACCAAACAAAAACAAGCACATTTTTCAT
TTTTTCCAGACGATATGATGACATGAGCACTGCGGGACCCCGGGGGGTAC
TCCGAATTAGAGAAGTAACCAGAAACGGGTATACTCGGGTGGATTATGAC
CATTTCAGGGTACACTTGGAAATCAACACGACACCACTCTCCGACAGCAT
CCGCCGTAGATCGCGGCGAAACAATCAACCGCTGTCTGTGTCCTGTGTCC
TGTGTCCTGTGCCTCGAAAGCATGATGCACGAGGCAGGTCATGCCCGTTT
TTCCCTCTCTCTGTGCCTCTCTCTCTCTCTCTCTCTCTGTTCTTTTACTG
ATCAGTACCACACCGAAGTACTCGCGCGTCAAGCGAGTCCGACCCTCTGT
TGAGAAGGGCCGGTATCCTATGGCCGCCCATGAACGATGACCGAGAGAGC
TTTGTTGTTCGTTTGGTTGTGGATACGTATGTGCGGTACACGGTATGTGC
GGCACACGGTTTTTTCTGCGGGTTTTATGCTAGAGCGTGGGGCGCCGGGA
TGATATGACCATTTCTGGGTACAAAATCGACCTCTTCCGGGTACATCAGT
AACCAATATCGGTCACACCAGAGGGTCCTAACTCCAGCGGAAGTTGTACC
CGATGGAGTTTTCTTCAGAAATGGGTACAATGGTTTTTCGGCCAATCAGC
TGACAGTCTGGGGGTGCAAGCGTGTTGATTTCTTGCTGTACCCTGAAGTG
GTGACTAAGTACCCGGGTGTACCCGTTTCTGGTTATTGGTCTCCGAATTA
TTCTCTGCGGAGCCCCCGGGAATGTTCTGTAACGTCCCCTGTTTTTTGCG
GTAACTGCGGTGCGGTAACACAATTTTGAGCTTTGCGGCAATTACCGGTA
ACGCATCAGACATTTCTGAGGTAACGGCGATCACTGGTTATTCTTGTGCA
TGTGTCTTCTCGTTACCATCGGCCCCCTACAACCATGTCGACTCATTTCG
GCGGGGCCAAGACGAAAACGCCTCCTGACCCCGTGTATATTTACGTTTGC
ATGTGTTCATGCCTCTTGCACCCATTTTTTTTATGATTGCCAGGTCGTAC
GTGGCTGCGACCGCATCGTGCCGGTGGACATCTACGTGCCGGGTTGCCCG
CCGACCGCGGAGGCTCTTCTGTACGGCCTTCTCCAGCTGCAGAAGAAGAT
CAAGGGGAACAAGTCGTTGTTGCTCCGGTTGAAGAAGTAGCGCATTTTTT
TTGTCTCTCCGCTGGTGTTGTGAGGAGGCACGCGGCGACTTTATTTTTTG
TTGTCGTTCACCGGTTTCACCATGTGTCGTCGTTTCCGTTTATGTAATGC
CGCCGGGGGGGTACACACAAACGGCTTTGTTTCGGGCTGGGTGTCCGCTC
AACGGTGTGCGAATAGGCCCAGATCTTTAGAAGCCCCCAGTCAGTGCTAA
CTAATGATCTGGTGGTTTTGGAACATGCTGGTATGCACACGATCGAAGAA
ACACTACCCATTCGAGATAGACCACAGTAGTCGAAGGGGATGTTTTGAGG
TCTCTCCACGAGTGGGACGAAAACCGGCGGGATAACAGGGGCACATTCAG
GGTCTATTTTAGCCTTTTCAATGAATTTCGCCCAGTGATGCCAGCAGGTG
CTGATCACAAAAACACTATGTAGTGTTCTATCGATTGGGGTCGACGATAC
AAATATCGGAGAGAAAGCCTCCGCGAGGTCGTGTGTTGAAACATTCTGCC
TTCACGGGAACAAGTTTGATCGTGGCTGAAATCCTGTAGACTTGCCTGCG
CAAACGATGCTGCTGGAAAGCACGGGTCTAAGGGAACGAGCTGTGCCGCA
CCCGCTTTCAAAATGTCCCAGCATTTCGGTCAAACACATGAACTTGGGTT
TCTTGACAAAAAGGAGTGGCAGAGTAGGAGCGCCACGGGAGGAGTTATAT
TCGTACCTGTGAATGCCATTGGTTCGGCGAAAAGCTTAAGTTTTGAGCAC
GGCTTTCACTGAGCTTGGGGTATGATGTATATTTCGCGGCAGACGCAAAC
CTACACTTCGCGTCATGGCCTGAGCCTTGGGCAAAATAAATATAACAAGG
GTCACCAATTTATTCCTTCATCACAATATACAACATACCGCCGTGCACAT
GGGTTGTAGAGGACACTAGGATACGTCAAACTTCGGAGTTTTTTTAAAAA
CAGGTTTTGTGAAGAGAGGGAATCGTCGTCGACCAGACGTTGGATGGGGA
GATGGCACCTAATGGACGTGGAGTATCCACACTTTTCGAGATACAAAGAG
GAGTATAGTACTCTGTGACCAGGTACAACCTACACTGCTGTGTCTTTTTT
CGAGACACAGTGATATGTGTGACTCCGTGTGTCTAGTGTCGTTCTTTCTC
TTACGGCAGAGTAGCATTGTGCCGCCCCACTGTTAAGCCTCTTCTTCTTC
ATCATGCCCCCGGCGGTAACAAACATGCGTTGCACATTGAGGAGAAGAAA
AGAGAGAGAGGGGAAG
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1028:5496..12711-

>mRNA_Ecto-sp13_S_contig1028.288.1 ID=mRNA_Ecto-sp13_S_contig1028.288.1|Name=mRNA_Ecto-sp13_S_contig1028.288.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=639bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1028:5496..12711- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCAACAAACCCGCTCCACCGCCGCCGTCTACCGCGCTCCCGTGGCCCT
CCTCCACACCACGGACAAGAAGCAGGAGCAGTCCAGCAAGGTACAGGACA
TGCGCAAGCCGACCAGCTCTGAGCTGACGAGAGCAGAGAATGTGGACCAG
CTCATGCAGCAGGGAAAGGGCGGAGTTGAGTTCGTGGTTTCGAAGGTGGA
CGATCTGGTGAACTGGGCGAGGAAGGGGTCGCTGTGGCCGATGACGTTCG
GGCTGGCCTGCTGCGCCGTGGAGATGATGCACTCCGCTGCCTCGCGCTAC
GACCTCGAGCGCTTTGGGATGGTGTTCCGGGCGTCGCCGCGGCAGTCGGA
CGTGATGATCGTGGCGGGCACGCTGTGCAACAAGATGGCACCAGCGCTGC
GTAAGGTTTACGATCAGATGCCCGAGCCGCGTTGGGTGGTGTCCATGGGG
TCTTGCGCGAACGGGGGTGGCTACTACCACTACTCGTACTCGGTCGTACG
TGGCTGCGACCGCATCGTGCCGGTGGACATCTACGTGCCGGGTTGCCCGC
CGACCGCGGAGGCTCTTCTGTACGGCCTTCTCCAGCTGCAGAAGAAGATC
AAGGGGAACAAGTCGTTGTTGCTCCGGTTGAAGAAGTAG
back to top